FvH4_2g13020

Carboxypeptidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
11408521 .. 11420487
11967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13020.t1

Sequence Viewer

Length: 1416 bp
ATGAAGCTACTGGTTTCCGTCCTCTTCATTTCCCTTTGCTTCTCCTCTTCCGTTCTTCCCGCTATTGCTCGCGGCGGCATTCCCAGCTCTAACCCCACAGGCTACGGATATGGTACTCAAACCGGTTCCGGCAGGCATTTGTTTGGGGAGGATGGATCTCAGACAAGTGTTGATGCTCAAGGGTACATGACTAATTCTGACCTGGAAATGGCTATTAAGGACTTTGGCCGACGGTGCAGCAACATTTCTAGGGTTTACAGTATTGGGGAGAGTGTGAATGGTGTTCCTCTGTGGGTAATTGAAATATCTGATAAGCCTGGGGAGGAAGAGCCTGAACCTGCATTTAAGTACATTGGCAACGTGCATGGAGATGAACCCGTAGGTCGTGAGCTGCTAATGCATCTTGCTAATTGGATATGTGACAACTTTTTGACAGATCCTATGGTGACATTGATTGTCGACAATGTGCATCTTCATATACTACCATCTATGAATCCTGATGGGTTTTCACTTCGGAGGCGTGGTAATGCAAATAATATAGACTTAAATCGAGATTTTCCGGATCAGTTCTTTAATATGAATGATGATGTGGATGTGCGGCAACCTGAAACAAGAGCAATAATGAAGTGGTTGAGAAAGATACATTTCACTGCATCTGCCAGCTTGCATGGGGGTGCAGTTGTTGCAAATTATCCATGGGATGGCACTCAGGATAAAAGGAGAATGTACTTTGGATGTCCTGATGACAAAATATTCCGATTCTTGGCTAGTGTGTACAGTCGTTCTCACTATAACATGTCCTTGAGCAAGGAATTTGAAGGTGGAATTACAAATGGAGCTTCCTGGTATCCTATATATGGAGGCATGCAAGACTGGAACTACATATATGGCGGCTGTCTTGAATTGACATTGGAGATTAGTGACAACAAATGGCCTCCTGCAAATGAGCTTCTTACTCTTTGGGAATACAACAAAAAGAGCATGCTTGATCTCGTTGCTACCGTAGTACAGACAGGAGTACACGGAAGGATCTTGACCTCAGATGGTGGGAAGCCATTGCCAGGCTCTATTGCTATCAATGGAATAGATTACACGGTAAAAGCTAGTACAGCCTTTGCGGATTACCATCGCTTGCTTGCCCCTGGAGGAAGATACGAAGTCACAGCCATTGTCCCAGGTTACAAATCAAAGACCACGGTTATTTCATTGGAAGAATCAGGCACAAATGTTGATTTTATTTTCGATCCTGAAGTTGATCGTAGATGGGATAGTATAAGCATCATTTGGGGTCCCCGTTTGGAAGTATATTTGCTTATGATTGTTGCAGTATTCCTTCTGTTTTTATGCAGGAGGAGGACAATTAGTCGATTAAAACAGAGACAGTTAGCAGGATTGAAAAGGCCAGTCGTGGTGTGA

Protein Analysis

472

Amino Acids

52.7

Weight (kDa)

6.09

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M14 PF00246 70 - 326 3.4e-61 Zinc carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 701
AccI GTMKAC 1 cut(s) 459
AccII CGCG 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 6 cut(s) 60, 72, 75, 598, 891, 1118
AclWI GGATC 5 cut(s) 163, 431, 570, 1037, 1238
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 1 cut(s) 1269
AfaI GTAC 8 cut(s) 115, 185, 350, 728, 776, 1008, 1020, 1108
AfiI CCNNNNNNNGG 5 cut(s) 208, 701, 763, 857, 1061
AflIII ACRYGT 1 cut(s) 795
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 4 cut(s) 302, 818, 902, 1396
AhdI GACNNNNNGTC 1 cut(s) 1362
AjnI CCWGG 6 cut(s) 201, 316, 842, 1060, 1141, 1174
AluBI AGCT 7 cut(s) 7, 87, 391, 663, 839, 949, 1103
AluI AGCT 7 cut(s) 7, 87, 391, 663, 839, 949, 1103
Alw26I GTCTC 1 cut(s) 1372
AlwI GGATC 5 cut(s) 163, 431, 570, 1037, 1238
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 3 cut(s) 226, 932, 1400
ApeKI GCWGC 2 cut(s) 237, 391
ApoI RAATTY 1 cut(s) 812
AsiGI ACCGGT 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 1289
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 1 cut(s) 1289
BbvI GCAGC 2 cut(s) 249, 378
BccI CCATC 7 cut(s) 146, 493, 494, 695, 1037, 1134, 1257
BciT130I CCWGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
BciVI GTATCC 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 1372
BfaI CTAG 3 cut(s) 249, 768, 1104
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 6 cut(s) 73, 76, 238, 392, 599, 892
BlsI GCNGC 6 cut(s) 74, 77, 239, 393, 600, 893
Bme1390I CCNGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
Bme18I GGWCC 1 cut(s) 1289
BmeRI GACNNNNNGTC 1 cut(s) 1362
BmgT120I GGNCC 1 cut(s) 1289
BmiI GGNNCC 3 cut(s) 127, 1290, 1291
BmrFI CCNGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
BmsI GCATC 5 cut(s) 163, 409, 478, 662, 1287
BpmI CTGGAG 1 cut(s) 1164
BpuEI CTTGAG 2 cut(s) 162, 823
BsaBI GATNNNNATC 1 cut(s) 1125
BsaJI CCNNGG 5 cut(s) 317, 695, 1141, 1174, 1194
BsaWI WCCGGW 2 cut(s) 122, 559
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 5 cut(s) 208, 701, 763, 857, 1061
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 15, 878, 1403
Bse3DI GCAATG 1 cut(s) 1055
Bse8I GATNNNNATC 1 cut(s) 1125
BseAI TCCGGA 1 cut(s) 559
BseBI CCWGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
BseDI CCNNGG 5 cut(s) 317, 695, 1141, 1174, 1194
BseGI GGATG 4 cut(s) 157, 598, 706, 740
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 5 cut(s) 208, 701, 763, 857, 1061
BseMI GCAATG 1 cut(s) 1055
BseMII CTCAG 3 cut(s) 173, 722, 1053
BseNI ACTGG 3 cut(s) 15, 878, 1403
BseRI GAGGAG 2 cut(s) 34, 1366
BseXI GCAGC 2 cut(s) 249, 378
BseYI CCCAGC 1 cut(s) 83
BsgI GTGCAG 2 cut(s) 256, 696
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 228, 934, 1402
BshTI ACCGGT 1 cut(s) 122
BsiSI CCGG 3 cut(s) 123, 129, 560
BslFI GGGAC 2 cut(s) 1157, 1275
BslI CCNNNNNNNGG 5 cut(s) 208, 701, 763, 857, 1061
BsmAI GTCTC 1 cut(s) 1372
BsmFI GGGAC 2 cut(s) 1157, 1275
BsmI GAATGC 1 cut(s) 78
BsnI GGCC 3 cut(s) 228, 934, 1402
Bsp13I TCCGGA 1 cut(s) 559
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 7 cut(s) 155, 436, 562, 988, 1029, 1243, 1255
Bsp19I CCATGG 1 cut(s) 695
BspACI CCGC 6 cut(s) 60, 72, 75, 598, 891, 1118
BspANI GGCC 3 cut(s) 228, 934, 1402
BspCNI CTCAG 3 cut(s) 172, 721, 1052
BspEI TCCGGA 1 cut(s) 559
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 127, 1290, 1291
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 5 cut(s) 163, 431, 570, 1037, 1238
BspQI GCTCTTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 1055
BsrFI RCCGGY 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 3 cut(s) 15, 878, 1403
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 5 cut(s) 317, 695, 1141, 1174, 1194
BssMI GATC 7 cut(s) 155, 436, 562, 988, 1029, 1243, 1255
BssT1I CCWWGG 1 cut(s) 695
Bst2UI CCWGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
Bst4CI ACNGT 7 cut(s) 234, 260, 779, 1003, 1096, 1198, 1383
Bst6I CTCTTC 3 cut(s) 29, 52, 321
BstAPI GCANNNNNTGC 1 cut(s) 683
BstAUI TGTACA 1 cut(s) 774
BstC8I GCNNGC 8 cut(s) 70, 134, 661, 665, 866, 983, 1133, 1137
BstDEI CTNAG 3 cut(s) 159, 708, 1039
BstDSI CCRYGG 2 cut(s) 695, 1194
BstF5I GGATG 4 cut(s) 157, 598, 706, 740
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 7 cut(s) 158, 439, 565, 991, 1032, 1246, 1258
BstMAI GTCTC 1 cut(s) 1372
BstMBI GATC 7 cut(s) 155, 436, 562, 988, 1029, 1243, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 84, 234, 397, 683, 1109
BstNI CCWGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
BstNSI RCATGY 3 cut(s) 799, 868, 985
BstSCI CCNGG 6 cut(s) 201, 316, 842, 1060, 1141, 1174
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 249, 378
BstX2I RGATCY 3 cut(s) 155, 436, 1029
BstYI RGATCY 3 cut(s) 155, 436, 1029
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 3 cut(s) 228, 934, 1402
BtgI CCRYGG 2 cut(s) 695, 1194
BtgZI GCGATG 1 cut(s) 1112
BtsCI GGATG 4 cut(s) 157, 598, 706, 740
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 648
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 8 cut(s) 70, 134, 661, 665, 866, 983, 1133, 1137
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 1289
Csp6I GTAC 8 cut(s) 114, 184, 349, 727, 775, 1007, 1019, 1107
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 7 cut(s) 187, 365, 668, 696, 796, 865, 982
CviQI GTAC 8 cut(s) 114, 184, 349, 727, 775, 1007, 1019, 1107
DdeI CTNAG 3 cut(s) 159, 708, 1039
DpnI GATC 7 cut(s) 157, 438, 564, 990, 1031, 1245, 1257
DpnII GATC 7 cut(s) 155, 436, 562, 988, 1029, 1243, 1255
DriI GACNNNNNGTC 1 cut(s) 1362
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 3 cut(s) 29, 52, 321
Eam1105I GACNNNNNGTC 1 cut(s) 1362
EarI CTCTTC 3 cut(s) 29, 52, 321
Eco130I CCWWGG 1 cut(s) 695
Eco47I GGWCC 1 cut(s) 1289
Eco57I CTGAAG 1 cut(s) 1269
EcoO109I RGGNCCY 1 cut(s) 1289
EcoRII CCWGG 6 cut(s) 201, 316, 842, 1060, 1141, 1174
EcoT14I CCWWGG 1 cut(s) 695
EcoT22I ATGCAT 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 695
FaeI CATG 7 cut(s) 190, 368, 671, 699, 799, 868, 985
FaqI GGGAC 2 cut(s) 1157, 1275
FatI CATG 7 cut(s) 186, 364, 667, 695, 795, 864, 981
FauI CCCGC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 6 cut(s) 73, 76, 238, 392, 599, 892
FokI GGATG 4 cut(s) 164, 605, 713, 747
Fsp4HI GCNGC 6 cut(s) 73, 76, 238, 392, 599, 892
FspBI CTAG 3 cut(s) 249, 768, 1104
GluI GCNGC 6 cut(s) 73, 76, 238, 392, 599, 892
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 1164
HaeIII GGCC 3 cut(s) 228, 934, 1402
HapII CCGG 3 cut(s) 123, 129, 560
Hin1II CATG 7 cut(s) 190, 368, 671, 699, 799, 868, 985
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 3 cut(s) 493, 759, 1214
HpaII CCGG 3 cut(s) 123, 129, 560
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 4 cut(s) 256, 460, 775, 1021
Hpy188I TCNGA 6 cut(s) 162, 199, 310, 516, 758, 1042
Hpy188III TCNNGA 9 cut(s) 386, 497, 551, 560, 710, 740, 899, 1033, 1247
Hpy8I GTNNAC 4 cut(s) 256, 460, 775, 1021
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 3 cut(s) 812, 1020, 1343
HpyCH4III ACNGT 7 cut(s) 234, 260, 779, 1003, 1096, 1198, 1383
HpyCH4IV ACGT 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 234, 397, 683, 1109
HpyF3I CTNAG 3 cut(s) 159, 708, 1039
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 7 cut(s) 190, 368, 671, 699, 799, 868, 985
KflI GGGWCCC 1 cut(s) 1289
Kpn2I TCCGGA 1 cut(s) 559
Kzo9I GATC 7 cut(s) 155, 436, 562, 988, 1029, 1243, 1255
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 836
Lsp1109I GCAGC 2 cut(s) 249, 378
LweI GCATC 5 cut(s) 163, 409, 478, 662, 1287
MaeI CTAG 3 cut(s) 249, 768, 1104
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 5 cut(s) 419, 445, 920, 1159, 1178
MalI GATC 7 cut(s) 157, 438, 564, 990, 1031, 1245, 1257
MboI GATC 7 cut(s) 155, 436, 562, 988, 1029, 1243, 1255
MboII GAAGA 7 cut(s) 16, 39, 47, 338, 464, 1161, 1223
MflI RGATCY 3 cut(s) 155, 436, 1029
MluCI AATT 8 cut(s) 193, 297, 409, 688, 812, 825, 902, 1359
Mph1103I ATGCAT 1 cut(s) 402
MroI TCCGGA 1 cut(s) 559
MseI TTAA 5 cut(s) 216, 345, 545, 573, 1370
MslI CAYNNNNRTG 2 cut(s) 369, 672
MspI CCGG 3 cut(s) 123, 129, 560
MspR9I CCNGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 5 cut(s) 84, 234, 397, 683, 1109
NcoI CCATGG 1 cut(s) 695
NdeII GATC 7 cut(s) 155, 436, 562, 988, 1029, 1243, 1255
NlaIII CATG 7 cut(s) 190, 368, 671, 699, 799, 868, 985
NlaIV GGNNCC 3 cut(s) 127, 1290, 1291
NmuCI GTSAC 4 cut(s) 419, 445, 920, 1159
NsiI ATGCAT 1 cut(s) 402
NspI RCATGY 3 cut(s) 799, 868, 985
PaeI GCATGC 2 cut(s) 868, 985
PciI ACATGT 1 cut(s) 795
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 999
PctI GAATGC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 493, 759, 1214
PflMI CCANNNNNTGG 1 cut(s) 701
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 6 cut(s) 74, 77, 239, 393, 600, 893
PpuMI RGGWCCY 1 cut(s) 1289
PscI ACATGT 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 1289
Psp6I CCWGG 6 cut(s) 201, 316, 842, 1060, 1141, 1174
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 6 cut(s) 201, 316, 842, 1060, 1141, 1174
PspN4I GGNNCC 3 cut(s) 127, 1290, 1291
PspPI GGNCC 1 cut(s) 1289
PspPPI RGGWCCY 1 cut(s) 1289
PsuI RGATCY 3 cut(s) 155, 436, 1029
RsaI GTAC 8 cut(s) 115, 185, 350, 728, 776, 1008, 1020, 1108
RsaNI GTAC 8 cut(s) 114, 184, 349, 727, 775, 1007, 1019, 1107
RseI CAYNNNNRTG 2 cut(s) 369, 672
SalI GTCGAC 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 5 cut(s) 216, 345, 545, 573, 1370
SatI GCNGC 6 cut(s) 73, 76, 238, 392, 599, 892
Sau3AI GATC 7 cut(s) 155, 436, 562, 988, 1029, 1243, 1255
Sau96I GGNCC 1 cut(s) 1289
ScrFI CCNGG 6 cut(s) 203, 318, 844, 1062, 1143, 1176
SfaNI GCATC 5 cut(s) 163, 409, 478, 662, 1287
SinI GGWCC 1 cut(s) 1289
SmiMI CAYNNNNRTG 2 cut(s) 369, 672
SmlI CTYRAG 2 cut(s) 177, 802
SmoI CTYRAG 2 cut(s) 177, 802
SphI GCATGC 2 cut(s) 868, 985
Sse9I AATT 8 cut(s) 193, 297, 409, 688, 812, 825, 902, 1359
SsiI CCGC 6 cut(s) 60, 72, 75, 598, 891, 1118
SspI AATATT 1 cut(s) 753
SspMI CTAG 3 cut(s) 249, 768, 1104
StyD4I CCNGG 6 cut(s) 201, 316, 842, 1060, 1141, 1174
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 7 cut(s) 234, 260, 779, 1003, 1096, 1198, 1383
TaiI ACGT 1 cut(s) 363
TaqI TCGA 4 cut(s) 459, 550, 1242, 1366
TasI AATT 8 cut(s) 193, 297, 409, 688, 812, 825, 902, 1359
TatI WGTACW 6 cut(s) 348, 726, 774, 1006, 1018, 1106
TauI GCSGC 4 cut(s) 75, 78, 601, 894
TfiI GAWTC 3 cut(s) 493, 759, 1214
Tru1I TTAA 5 cut(s) 216, 345, 545, 573, 1370
Tru9I TTAA 5 cut(s) 216, 345, 545, 573, 1370
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 4 cut(s) 419, 445, 920, 1159
TseI GCWGC 2 cut(s) 237, 391
Tsp45I GTSAC 4 cut(s) 419, 445, 920, 1159
TspDTI ATGAA 8 cut(s) 16, 17, 387, 464, 506, 593, 638, 1194
TspGWI ACGGA 4 cut(s) 7, 40, 120, 1038
TspRI CASTG 1 cut(s) 655
Van91I CCANNNNNTGG 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 1289
XapI RAATTY 1 cut(s) 812
XceI RCATGY 3 cut(s) 799, 868, 985
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 3 cut(s) 249, 768, 1104
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.