Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006544

Physical Location & Seq

Genomic Coordinates Forward (+)

2614678 .. 2616012

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGCTTGCTCTTTCCATCCTCTTCCTTTCTCTCAACTTCTCCTCTTTTCTTCGTCCTGCTTCTGCTAGAGGCGGCCTTCATACTTCCTACCCTCCAGCCCAGAATTTATGCCAACGCTTATTCATTTTTATTTTGCACATATGCTCTTGTCTTTTGATCGAAATTAAATTACAGGAAAGATTATTTGCATGTCCAGACGACGAGACATTCCGGTTCTTAGCAAGTGTATATAGTCGCTCTCACCACAATATGTCATTGCGCAAGGAATTTGAGGGAGGGATTACGAATCGAGCTTTCTGGTACCCTATATATGGAGGCATGCAAGATTGGAACTACAAAAATGGTGGCTGTTTTGAATTGACTTTGGAGATTAGTGATAACAAATGGCCTACTGCTAACGAGGTCAGGCATCAGTTAGGGCGAGTGTGTGCAACCTTTAAATATAAAACGACATTCTTTAGCCAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0004185 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008236 GO:0008237 GO:0008238 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016485 GO:0016787 GO:0017171 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048471 GO:0051604 GO:0051721 GO:0070008 GO:0070011 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

158

Amino Acids

18.19

Weight (kDa)

8.56

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M14	PF00246	64 - 138	3.7e-13	Zinc carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71696 AT1G71696
fragaria_vesca	FvH4_2g13020 FvH4_2g13020
malus_domestica	MD05G1033700.v1.1 MD10G1034600.v1.1
prunus_persica	Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040900_v2.0.a1
pyrus_communis	pycom05g02430 pycom10g02360 pycom10g02380
rosa_chinensis	RchiOBHm_Chr6g0274201
rosa_laevigata	RLG00000013571
rosa_multiflora	Rmu_sc0001939.1_g000004
rosa_roxburghii	Rroxscaffold_7G00194410
rosa_rugosa	Rorug06G0079800 Rorug06G0079900 Rorug06G0080000
rosa_samantha	Rh6AG195000 Rh6BG199300 Rh6CG199500 Rh6DG191000
rosa_wichuraiana	Rw6G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	263
Acc65I	GGTACC	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	303
AciI	CCGC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	106, 269
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	359
AluBI	AGCT	2 cut(s)	7, 296
AluI	AGCT	2 cut(s)	7, 296
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	76, 389
ApoI	RAATTY	2 cut(s)	106, 269
Asp718I	GGTACC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	303
BccI	CCATC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	305
BmsI	GCATC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	78, 391
BshNI	GGYRCC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	78, 391
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	78, 391
BspLI	GGNNCC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	257
BssMI	GATC	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	9, 323
BstDEI	CTNAG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	159
BstNSI	RCATGY	2 cut(s)	195, 325
BsuRI	GGCC	2 cut(s)	78, 391
BtsCI	GGATG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	9, 323
CfoI	GCGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	2 cut(s)	192, 322
CviJI	RGCY	7 cut(s)	7, 78, 101, 296, 351, 391, 465
CviKI_1	RGCY	7 cut(s)	7, 78, 101, 296, 351, 391, 465
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DraI	TTTAAA	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
FaeI	CATG	2 cut(s)	195, 325
FatI	CATG	2 cut(s)	191, 321
FauNDI	CATATG	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	263
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	78, 391
HapII	CCGG	1 cut(s)	214
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	195, 325
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	236
Hpy188III	TCNNGA	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	139, 191, 325, 434
HpyF3I	CTNAG	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	195, 325
HspAI	GCGC	1 cut(s)	262
KpnI	GGTACC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	72, 111, 116, 161, 210, 227, 286, 394
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	69
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	16, 44
MluCI	AATT	5 cut(s)	106, 165, 170, 269, 359
MnlI	CCTC	8 cut(s)	32, 55, 65, 105, 268, 272, 311, 397
MseI	TTAA	2 cut(s)	168, 441
MspI	CCGG	1 cut(s)	214
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	195, 325
NlaIV	GGNNCC	1 cut(s)	305
NsbI	TGCGCA	1 cut(s)	263
NspI	RCATGY	2 cut(s)	195, 325
PaeI	GCATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	305
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	168, 441
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	1 cut(s)	159
SetI	ASST	4 cut(s)	9, 298, 408, 440
SfaNI	GCATC	1 cut(s)	421
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	5 cut(s)	106, 165, 170, 269, 359
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	69
TaqI	TCGA	2 cut(s)	162, 292
TasI	AATT	5 cut(s)	106, 165, 170, 269, 359
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	168, 441
Tru9I	TTAA	2 cut(s)	168, 441
TspDTI	ATGAA	2 cut(s)	71, 115
XapI	RAATTY	2 cut(s)	106, 269
XceI	RCATGY	2 cut(s)	195, 325
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.