Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006544

Physical Location & Seq

Genomic Coordinates Forward (+)

2875043 .. 2880490

Gene Structure 5448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02430.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGCTTGCTCTTTCCATCCTCTTCCTCTCTCTCAGCTTCTCCTCTTTTCTTCGTACTCTCACTGCTAGAGGCGGCCTTCACAGTTCCTACCCCCCAGTTATCGAATTTGATCCTCGCGGTGGTTCTGGAAGGCAATTGTTTGAAGATAAGGAGTCTCAGAAGCGTGTTGACGTAGCTCAAGGGTACATGACTAACTCTGACCTGGAACGGGCCATTAAGGTGTTCGGCCGAAGATGCAGTAACATTTCTAGGGTTTACAGTATTGGGAAGAGTGTGAATGGGGTTCCTCTGTGGGCAATAGAAATTTCTGATAAGCCTGGGAAGGAAGAGCCTGAACCTGCATTTAAGTACATTGGAAATGTGCACGGAGATGAACCTGTAGGCCGGGAGCTTCTAATTCTACTTGCAAATTGGATATGTGACAACTATTTGATCGATCCTTTGGCAACATCGATTGTGGACAATGTGCATCTTCATTTGCTGCCGTCTATGAATCCCGATGGGTTTTCATTAAGGAGGCGGGGTAATGCAAATAATGTTGACCTAAATCGAGATTTTCCAGACCAGTTCTTTCCGGTCAATGATGATGAGGATTGGAGACAACCTGAAACAAGAGCAATAATGAAATGGTTGAGAGAGATACAATTTACTGCATCTGCCAGCTTGCATGGGGGTGCCCTTGTTGCAAATTATCCATGGGATGGCACTCAGGATAAAAGGAGAGATTATTTTGCATGTCCGGACGATGAGACATTCCGGTTCTTAGCAAGTGTGTATAGTCGCTCTCACTACAATATGTCATTGAGCAAGGAATTCGAGGGAGGGATTACAAATGGAGCATTCTGGTACCCTATATATGGAGGCATGCAAGACTGGAACTACATAAATGGTGGCTGTTTCGAAATAACGTTGGAGATTAGTGATAACAAATGGCCTACTGCTAATGAGGTTAGGCATCAGTTAGGGCGTGTGTTTGCAACCTTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0004185 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008236 GO:0008237 GO:0008238 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016485 GO:0016787 GO:0017171 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048471 GO:0051604 GO:0051721 GO:0070008 GO:0070011 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

331

Amino Acids

37.49

Weight (kDa)

5.57

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71696 AT1G71696
fragaria_vesca	FvH4_2g13020 FvH4_2g13020
malus_domestica	MD05G1033700.v1.1 MD10G1034600.v1.1
prunus_persica	Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040900_v2.0.a1
pyrus_communis	pycom05g02430 pycom10g02360 pycom10g02380
rosa_chinensis	RchiOBHm_Chr6g0274201
rosa_laevigata	RLG00000013571
rosa_multiflora	Rmu_sc0001939.1_g000004
rosa_roxburghii	Rroxscaffold_7G00194410
rosa_rugosa	Rorug06G0079800 Rorug06G0079900 Rorug06G0080000
rosa_samantha	Rh6AG195000 Rh6BG199300 Rh6CG199500 Rh6DG191000
rosa_wichuraiana	Rw6G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
Acc65I	GGTACC	1 cut(s)	849
AccB1I	GGYRCC	2 cut(s)	677, 849
AccB7I	CCANNNNNTGG	1 cut(s)	704
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	3 cut(s)	75, 120, 523
AclI	AACGTT	1 cut(s)	911
AclWI	GGATC	2 cut(s)	107, 434
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	3 cut(s)	107, 306, 815
AfaI	GTAC	4 cut(s)	58, 188, 353, 851
AfiI	CCNNNNNNNGG	4 cut(s)	122, 211, 704, 860
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	2 cut(s)	204, 319
AluBI	AGCT	5 cut(s)	7, 39, 179, 394, 666
AluI	AGCT	5 cut(s)	7, 39, 179, 394, 666
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	3 cut(s)	162, 595, 746
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	107, 434
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	5 cut(s)	76, 213, 229, 385, 935
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	3 cut(s)	107, 306, 815
Asp718I	GGTACC	1 cut(s)	849
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	389
AsuII	TTCGAA	1 cut(s)	903
BaeGI	GKGCMC	2 cut(s)	369, 682
BanI	GGYRCC	2 cut(s)	677, 849
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	3 cut(s)	26, 497, 698
BceAI	ACGGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	2 cut(s)	799, 833
BciT130I	CCWGG	2 cut(s)	206, 321
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	3 cut(s)	162, 595, 746
BfaI	CTAG	2 cut(s)	69, 252
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	76, 485
BlsI	GCNGC	2 cut(s)	77, 486
Bme1390I	CCNGG	3 cut(s)	206, 321, 389
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	3 cut(s)	288, 679, 851
BmrFI	CCNGG	3 cut(s)	206, 321, 389
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	4 cut(s)	227, 481, 665, 967
BmuI	ACTGGG	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	903
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	389
Bsa29I	ATCGAT	2 cut(s)	438, 455
BsaJI	CCNNGG	2 cut(s)	320, 698
BsaWI	WCCGGW	3 cut(s)	577, 742, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 211, 704, 860
Bse1I	ACTGG	3 cut(s)	98, 568, 881
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	2 cut(s)	206, 321
BseCI	ATCGAT	2 cut(s)	438, 455
BseDI	CCNNGG	2 cut(s)	320, 698
BseGI	GGATG	2 cut(s)	18, 709
BseLI	CCNNNNNNNGG	4 cut(s)	122, 211, 704, 860
BseMII	CTCAG	3 cut(s)	49, 173, 725
BseNI	ACTGG	3 cut(s)	98, 568, 881
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	2 cut(s)	369, 682
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	5 cut(s)	78, 215, 231, 387, 937
BshNI	GGYRCC	2 cut(s)	677, 849
BshVI	ATCGAT	2 cut(s)	438, 455
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	4 cut(s)	388, 578, 743, 760
BslI	CCNNNNNNNGG	4 cut(s)	122, 211, 704, 860
BsmAI	GTCTC	3 cut(s)	162, 595, 746
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	5 cut(s)	78, 215, 231, 387, 937
Bsp119I	TTCGAA	1 cut(s)	903
Bsp1286I	GDGCHC	2 cut(s)	369, 682
Bsp13I	TCCGGA	1 cut(s)	742
Bsp143I	GATC	3 cut(s)	112, 435, 439
Bsp19I	CCATGG	1 cut(s)	698
BspACI	CCGC	3 cut(s)	75, 120, 523
BspANI	GGCC	5 cut(s)	78, 215, 231, 387, 937
BspCNI	CTCAG	3 cut(s)	48, 172, 724
BspDI	ATCGAT	2 cut(s)	438, 455
BspEI	TCCGGA	1 cut(s)	742
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	288, 679, 851
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	107, 434
BspQI	GCTCTTC	1 cut(s)	324
BspT104I	TTCGAA	1 cut(s)	903
BspT107I	GGYRCC	2 cut(s)	677, 849
BsrI	ACTGG	3 cut(s)	98, 568, 881
BssECI	CCNNGG	2 cut(s)	320, 698
BssMI	GATC	3 cut(s)	112, 435, 439
BssT1I	CCWWGG	1 cut(s)	698
Bst2UI	CCWGG	2 cut(s)	206, 321
Bst4CI	ACNGT	2 cut(s)	86, 263
Bst6I	CTCTTC	3 cut(s)	29, 266, 324
BstBI	TTCGAA	1 cut(s)	903
BstC8I	GCNNGC	4 cut(s)	9, 664, 668, 869
BstDEI	CTNAG	4 cut(s)	35, 159, 711, 766
BstDSI	CCRYGG	1 cut(s)	698
BstF5I	GGATG	2 cut(s)	18, 709
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	3 cut(s)	115, 438, 442
BstMAI	GTCTC	3 cut(s)	162, 595, 746
BstMBI	GATC	3 cut(s)	112, 435, 439
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 686
BstNI	CCWGG	2 cut(s)	206, 321
BstNSI	RCATGY	2 cut(s)	741, 871
BstSCI	CCNGG	3 cut(s)	204, 319, 387
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	2 cut(s)	369, 682
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	471
BstZI	CGGCCG	1 cut(s)	229
Bsu15I	ATCGAT	2 cut(s)	438, 455
BsuRI	GGCC	5 cut(s)	78, 215, 231, 387, 937
BsuTUI	ATCGAT	2 cut(s)	438, 455
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	2 cut(s)	18, 709
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	4 cut(s)	9, 664, 668, 869
Cfr13I	GGNCC	1 cut(s)	213
ClaI	ATCGAT	2 cut(s)	438, 455
Csp6I	GTAC	4 cut(s)	57, 187, 352, 850
CviAII	CATG	5 cut(s)	190, 671, 699, 738, 868
CviQI	GTAC	4 cut(s)	57, 187, 352, 850
DdeI	CTNAG	4 cut(s)	35, 159, 711, 766
DpnI	GATC	3 cut(s)	114, 437, 441
DpnII	GATC	3 cut(s)	112, 435, 439
EaeI	YGGCCR	1 cut(s)	229
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	3 cut(s)	29, 266, 324
EarI	CTCTTC	3 cut(s)	29, 266, 324
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	698
Eco52I	CGGCCG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	204, 319
EcoT14I	CCWWGG	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	698
FaeI	CATG	5 cut(s)	193, 674, 702, 741, 871
FatI	CATG	5 cut(s)	189, 670, 698, 737, 867
FauI	CCCGC	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	76, 485
FokI	GGATG	2 cut(s)	5, 716
Fsp4HI	GCNGC	2 cut(s)	76, 485
FspBI	CTAG	2 cut(s)	69, 252
GluI	GCNGC	2 cut(s)	76, 485
HaeIII	GGCC	5 cut(s)	78, 215, 231, 387, 937
HapII	CCGG	4 cut(s)	388, 578, 743, 760
Hin1II	CATG	5 cut(s)	193, 674, 702, 741, 871
HincII	GTYRAC	2 cut(s)	172, 544
HindII	GTYRAC	2 cut(s)	172, 544
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	2 cut(s)	155, 496
HpaII	CCGG	4 cut(s)	388, 578, 743, 760
Hpy166II	GTNNAC	5 cut(s)	172, 259, 367, 463, 544
Hpy188I	TCNGA	3 cut(s)	162, 202, 313
Hpy188III	TCNNGA	6 cut(s)	129, 500, 554, 563, 713, 743
Hpy8I	GTNNAC	5 cut(s)	172, 259, 367, 463, 544
HpyAV	CCTTC	3 cut(s)	89, 126, 319
HpyCH4III	ACNGT	2 cut(s)	86, 263
HpyCH4IV	ACGT	2 cut(s)	174, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 686
HpyF3I	CTNAG	4 cut(s)	35, 159, 711, 766
HpySE526I	ACGT	2 cut(s)	174, 911
Hsp92II	CATG	5 cut(s)	193, 674, 702, 741, 871
Kpn2I	TCCGGA	1 cut(s)	742
KpnI	GGTACC	1 cut(s)	853
Kzo9I	GATC	3 cut(s)	112, 435, 439
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	2 cut(s)	391, 839
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	4 cut(s)	227, 481, 665, 967
MaeI	CTAG	2 cut(s)	69, 252
MaeII	ACGT	2 cut(s)	174, 911
MaeIII	GTNAC	2 cut(s)	242, 422
MalI	GATC	3 cut(s)	114, 437, 441
MboI	GATC	3 cut(s)	112, 435, 439
MboII	GAAGA	7 cut(s)	16, 44, 158, 246, 283, 341, 467
MfeI	CAATTG	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	369, 682
MluCI	AATT	8 cut(s)	107, 137, 306, 399, 412, 647, 691, 815
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	894
MroI	TCCGGA	1 cut(s)	742
MseI	TTAA	3 cut(s)	219, 348, 515
MslI	CAYNNNNRTG	3 cut(s)	221, 372, 675
MspI	CCGG	4 cut(s)	388, 578, 743, 760
MspR9I	CCNGG	3 cut(s)	206, 321, 389
MunI	CAATTG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	2 cut(s)	206, 321
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	237, 686
NciI	CCSGG	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	698
NdeII	GATC	3 cut(s)	112, 435, 439
NlaIII	CATG	5 cut(s)	193, 674, 702, 741, 871
NlaIV	GGNNCC	3 cut(s)	288, 679, 851
NmuCI	GTSAC	1 cut(s)	422
NspI	RCATGY	2 cut(s)	741, 871
NspV	TTCGAA	1 cut(s)	903
PaeI	GCATGC	1 cut(s)	871
PciSI	GCTCTTC	1 cut(s)	324
PctI	GAATGC	1 cut(s)	842
PfeI	GAWTC	1 cut(s)	496
PflMI	CCANNNNNTGG	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	77, 486
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp1406I	AACGTT	1 cut(s)	911
Psp6I	CCWGG	2 cut(s)	204, 319
PspGI	CCWGG	2 cut(s)	204, 319
PspN4I	GGNNCC	3 cut(s)	288, 679, 851
PspPI	GGNCC	1 cut(s)	213
RsaI	GTAC	4 cut(s)	58, 188, 353, 851
RsaNI	GTAC	4 cut(s)	57, 187, 352, 850
RseI	CAYNNNNRTG	3 cut(s)	221, 372, 675
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	219, 348, 515
SatI	GCNGC	2 cut(s)	76, 485
Sau3AI	GATC	3 cut(s)	112, 435, 439
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	206, 321, 389
SduI	GDGCHC	2 cut(s)	369, 682
SfaNI	GCATC	4 cut(s)	227, 481, 665, 967
SfcI	CTRYAG	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	903
SmiMI	CAYNNNNRTG	3 cut(s)	221, 372, 675
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	871
Sse9I	AATT	8 cut(s)	107, 137, 306, 399, 412, 647, 691, 815
SsiI	CCGC	3 cut(s)	75, 120, 523
SspMI	CTAG	2 cut(s)	69, 252
StyD4I	CCNGG	3 cut(s)	204, 319, 387
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	2 cut(s)	86, 263
TaiI	ACGT	2 cut(s)	177, 914
TaqI	TCGA	6 cut(s)	105, 438, 455, 553, 819, 903
TasI	AATT	8 cut(s)	107, 137, 306, 399, 412, 647, 691, 815
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	3 cut(s)	219, 348, 515
Tru9I	TTAA	3 cut(s)	219, 348, 515
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	6 cut(s)	17, 390, 467, 501, 509, 641
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	704
VneI	GTGCAC	1 cut(s)	365
XapI	RAATTY	3 cut(s)	107, 306, 815
XceI	RCATGY	2 cut(s)	741, 871
XspI	CTAG	2 cut(s)	69, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.