Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006544

Physical Location & Seq

Genomic Coordinates Forward (+)

4440333 .. 4443202

Gene Structure 2870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1034600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTTATTGATAATTGTCTTCATTCATTTCCAATAGACTTCTTCCGGCTGTACGTTGGCCTCAGTGTGAGTGTACGTTTTGATCATTATTCAATTTTACCTATGATGCTCAATGTGTTCAGGAATTTGAGGGAGGCATTACAAATGGAGCTTTCTGGAGTATATGGAAGGATCCTTTCATCAGATGGTGGTAGGCCGTTACCTGGCTTTATTGCAATCGAAGGAATAAATTCCAAGGTTCAAGCTAGCAGAGCAATTGTGGATTACCATAGCTTGCTTGCCCCCGCCGGAAGATATAAGGTCACAGCTACTGTGCCTGGGTATAAATCAAAGACGACATGTATCTGGTTGGAAGAAGAAGGCACGACAAATGGGGATTTTGTTCTTGATCCTGAAGTCAATCCCAGAGAAATTCAACTTCAAAGTGCCTGTGATTGCGGCTGGGGAAGTATGAGCATCATTTGGGGAACCCCTTTCGAAGTGTACGTGCTTTTGATTGTTATTGTAGGTTCCTTTTGTTTTTATACAGGAGGAGAACATTCAGCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0004185 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008236 GO:0008237 GO:0008238 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016485 GO:0016787 GO:0017171 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048471 GO:0051604 GO:0051721 GO:0070008 GO:0070011 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

184

Amino Acids

20.31

Weight (kDa)

5.15

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71696 AT1G71696
fragaria_vesca	FvH4_2g13020 FvH4_2g13020
malus_domestica	MD05G1033700.v1.1 MD10G1034600.v1.1
prunus_persica	Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040700_v2.0.a1 Prupe.8G040900_v2.0.a1
pyrus_communis	pycom05g02430 pycom10g02360 pycom10g02380
rosa_chinensis	RchiOBHm_Chr6g0274201
rosa_laevigata	RLG00000013571
rosa_multiflora	Rmu_sc0001939.1_g000004
rosa_roxburghii	Rroxscaffold_7G00194410
rosa_rugosa	Rorug06G0079800 Rorug06G0079900 Rorug06G0080000
rosa_samantha	Rh6AG195000 Rh6BG199300 Rh6CG199500 Rh6DG191000
rosa_wichuraiana	Rw6G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	285, 438
AclWI	GGATC	3 cut(s)	166, 179, 383
AcsI	RAATTY	3 cut(s)	124, 229, 411
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	3 cut(s)	53, 75, 485
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	93, 242, 416, 422
AjnI	CCWGG	2 cut(s)	202, 316
AluBI	AGCT	4 cut(s)	151, 245, 273, 308
AluI	AGCT	4 cut(s)	151, 245, 273, 308
AlwI	GGATC	3 cut(s)	166, 179, 383
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	58, 194
ApoI	RAATTY	3 cut(s)	124, 229, 411
Asp700I	GAANNNNTTC	1 cut(s)	229
AsuII	TTCGAA	1 cut(s)	477
AsuNHI	GCTAGC	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	204, 318
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	439
BlsI	GCNGC	1 cut(s)	440
Bme1390I	CCNGG	2 cut(s)	204, 318
BmiI	GGNNCC	3 cut(s)	173, 469, 511
BmrFI	CCNGG	2 cut(s)	204, 318
BmsI	GCATC	2 cut(s)	96, 465
BmtI	GCTAGC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	234, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	204, 318
BseDI	CCNNGG	2 cut(s)	234, 317
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	546
BseYI	CCCAGC	1 cut(s)	441
BshFI	GGCC	2 cut(s)	60, 196
BsiSI	CCGG	2 cut(s)	46, 288
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	2 cut(s)	60, 196
Bsp119I	TTCGAA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	82, 171, 388
BspACI	CCGC	2 cut(s)	285, 438
BspANI	GGCC	2 cut(s)	60, 196
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	173, 469, 511
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	3 cut(s)	166, 179, 383
BspT104I	TTCGAA	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	234, 317
BssMI	GATC	3 cut(s)	82, 171, 388
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	204, 318
Bst4CI	ACNGT	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	487
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	247, 275, 279
BstDEI	CTNAG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	85, 174, 391
BstMBI	GATC	3 cut(s)	82, 171, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	2 cut(s)	204, 318
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	202, 316
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	60, 196
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	247, 275, 279
CaiI	CAGNNNCTG	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	52, 74, 484
CviAII	CATG	1 cut(s)	339
CviQI	GTAC	3 cut(s)	52, 74, 484
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	3 cut(s)	84, 173, 390
DpnII	GATC	3 cut(s)	82, 171, 388
Eco130I	CCWWGG	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	202, 316
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	342
FaiI	YATR	9 cut(s)	104, 163, 165, 270, 297, 324, 340, 452, 525
FatI	CATG	1 cut(s)	338
FauI	CCCGC	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	439
Fsp4HI	GCNGC	1 cut(s)	439
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	1 cut(s)	439
GsaI	CCCAGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	60, 196
HapII	CCGG	2 cut(s)	46, 288
Hin1II	CATG	1 cut(s)	342
HpaII	CCGG	2 cut(s)	46, 288
Hpy166II	GTNNAC	2 cut(s)	74, 484
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	4 cut(s)	121, 156, 386, 392
Hpy8I	GTNNAC	2 cut(s)	74, 484
HpyAV	CCTTC	3 cut(s)	162, 215, 353
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	3 cut(s)	54, 76, 486
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	3 cut(s)	54, 76, 486
Hsp92II	CATG	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	82, 171, 388
LmnI	GCTCC	1 cut(s)	148
LweI	GCATC	2 cut(s)	96, 465
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	3 cut(s)	54, 76, 486
MaeIII	GTNAC	2 cut(s)	198, 301
MalI	GATC	3 cut(s)	84, 173, 390
MboI	GATC	3 cut(s)	82, 171, 388
MboII	GAAGA	5 cut(s)	11, 34, 303, 365, 368
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	171
MluCI	AATT	6 cut(s)	13, 93, 124, 229, 255, 411
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	4 cut(s)	71, 123, 127, 524
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	550
MspI	CCGG	2 cut(s)	46, 288
MspR9I	CCNGG	2 cut(s)	204, 318
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	2 cut(s)	204, 318
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	3 cut(s)	82, 171, 388
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	342
NlaIV	GGNNCC	3 cut(s)	173, 469, 511
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	342
NspV	TTCGAA	1 cut(s)	477
PciI	ACATGT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	440
Ppu21I	YACGTR	1 cut(s)	487
PscI	ACATGT	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	202, 316
PspFI	CCCAGC	1 cut(s)	441
PspGI	CCWGG	2 cut(s)	202, 316
PspN4I	GGNNCC	3 cut(s)	173, 469, 511
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	3 cut(s)	53, 75, 485
RsaNI	GTAC	3 cut(s)	52, 74, 484
SaqAI	TTAA	1 cut(s)	550
SatI	GCNGC	1 cut(s)	439
Sau3AI	GATC	3 cut(s)	82, 171, 388
ScrFI	CCNGG	2 cut(s)	204, 318
SfaNI	GCATC	2 cut(s)	96, 465
SfuI	TTCGAA	1 cut(s)	477
Sse9I	AATT	6 cut(s)	13, 93, 124, 229, 255, 411
SsiI	CCGC	2 cut(s)	285, 438
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	202, 316
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	3 cut(s)	57, 79, 489
TaqI	TCGA	2 cut(s)	219, 477
TasI	AATT	6 cut(s)	13, 93, 124, 229, 255, 411
TauI	GCSGC	1 cut(s)	441
Tru1I	TTAA	1 cut(s)	550
Tru9I	TTAA	1 cut(s)	550
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	11, 15, 168
TspRI	CASTG	1 cut(s)	70
XapI	RAATTY	3 cut(s)	124, 229, 411
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.