RchiOBHm_Chr6g0274201

Carboxypeptidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
35576352 .. 35587552
11201 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24598

Sequence Viewer

Length: 1443 bp
ATGAAGCTTCTGTTTTCCATCCTGTTCATTTCCCTTCGCTTTTCCTCTTCCGTTGTTCCTGCTATTGCTAGAGGCGGCAGTCCCAACTCTAACCCCACAGGCTACGGATATGGTACCAGCAGGCACTTGTTTGGGGACGAAGGATCTCAGACAAGTGTTGATGTCGCGCAAGGCTACATGACTAATTCTGACCTGGAAAAGGCCATTAAGGACTTCGGCCAAAGGTGCAGTAACATTTCTAGGGTTTACAGTATTGGGAAGAGTGTGTATGGGGTTCCTCTGTGGGTAATTGAAATTTCTGATAAGCCTGGGGAGGAAGAGCCTGAACCTGCATTTAAGTACATTGGAAACGTGCATGGAGATGAACCTGTAGGTCGTGAGCTTCTAATGCATCTTGCTAATTGGATATGTGACAACTATTTGATAGATCCTGTGGCAACATTGATTGTGGACAATGTGCATCTTCATATACTACCATCTATGAATCCTGATGGGTTTTTACTGCGGAGGCGTGGTAATGCAAATAATATAGACCTAAATCGAGATTTTCCGGATCAGTTCTTTCATATGAATGATGATGTGGATGTGCTGCAACCTGAAACAAGAGCAATAATGAAGTGGTTGAGAAAGATACATTTCACTGCATCTGCCAGCTTGCATGGGGGTGCACTTGTTGCAAATTATCCATGGGATGGGACTCAGGATAAAAGGAAAACGTACTTTGGATGTCCTGATGACAAAACATTCCGGTTCTTGGCTAGTGTGTACAGTCGTTCTCACCATAACATGTCCTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCTTCCTGGTACCCTATCTATGGAGGCATGCAAGACTGGAACTATATATATGGTGGCTGTCTTGAATTGACATTGGAGATTAGTGAGAACAAATGGCCTATTGCTAATGAGCTTCTTACTCTTTGGGAATACAACAAAAAGAGCATGCTTAATCTCGTTGCTAGCCTAGTACAGACAGGAGTACATGGAAGGATCTTTTCCTCAGATGGTGGGAGGCCATTGCCAGGCTCTATTGCAATCAAAGGAATAAATTACACGGTAAAAGCTAGAACAGCCTTTGCGGATTACCATCGCTTGCTTGCCCCTGGAGGAAGATATGAAGTCACAGCCATTGTTCCTGGTTACAAATCAAAGACCACGGTTATTTGGTTGGAAGAATCAGGCACAAATGTAGATTTTATTCTTGATCCTGAAGTTGATCGCAGAGGGACTATATTACGCAGTGCCTGCAAATGCAGCTTGGATAGTATGAACATCATTTGGGGGACCCCTTTGGAAGTATATTTGCTTTTGATTGTTATTGCGGGATTCCTTTTGTTTTTATACAGAAGGAGGACATTTAGTCGGTTAAAACAGAGACAATTAGCAGGATCAAAAAGGCCAGTTGTGGTTTGA

Protein Analysis

480

Amino Acids

53.85

Weight (kDa)

8.09

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M14 PF00246 66 - 323 1.1e-58 Zinc carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
Acc65I GGTACC 2 cut(s) 113, 837
AccB1I GGYRCC 2 cut(s) 113, 837
AccB7I CCANNNNNTGG 1 cut(s) 692
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 4 cut(s) 75, 505, 1109, 1352
AclWI GGATC 6 cut(s) 151, 422, 561, 1028, 1229, 1426
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 2 cut(s) 294, 803
AcuI CTGAAG 1 cut(s) 1260
AfaI GTAC 7 cut(s) 115, 341, 719, 767, 839, 999, 1011
AfiI CCNNNNNNNGG 5 cut(s) 199, 692, 754, 848, 1052
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 3 cut(s) 293, 809, 893
AhdI GACNNNNNGTC 1 cut(s) 1389
AjnI CCWGG 6 cut(s) 192, 307, 833, 1051, 1132, 1165
AluBI AGCT 7 cut(s) 7, 382, 654, 830, 940, 1094, 1287
AluI AGCT 7 cut(s) 7, 382, 654, 830, 940, 1094, 1287
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 1 cut(s) 1399
Alw44I GTGCAC 1 cut(s) 666
AlwI GGATC 6 cut(s) 151, 422, 561, 1028, 1229, 1426
AlwNI CAGNNNCTG 1 cut(s) 1275
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 5 cut(s) 201, 217, 923, 1043, 1427
ApaLI GTGCAC 1 cut(s) 666
ApeKI GCWGC 2 cut(s) 589, 1284
ApoI RAATTY 2 cut(s) 294, 803
Asp718I GGTACC 2 cut(s) 113, 837
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 1314
AsuHPI GGTGA 1 cut(s) 770
AsuNHI GCTAGC 1 cut(s) 989
AvaII GGWCC 1 cut(s) 1314
BaeGI GKGCMC 1 cut(s) 670
BanI GGYRCC 2 cut(s) 113, 837
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 2 cut(s) 576, 1296
BccI CCATC 6 cut(s) 26, 484, 485, 686, 1028, 1125
BciT130I CCWGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
BcoDI GTCTC 1 cut(s) 1399
BfaI CTAG 6 cut(s) 69, 240, 759, 990, 995, 1095
BfmI CTRYAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 3 cut(s) 76, 590, 1285
BlsI GCNGC 3 cut(s) 77, 591, 1286
Bme1390I CCNGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
Bme18I GGWCC 1 cut(s) 1314
BmeRI GACNNNNNGTC 1 cut(s) 1389
BmgT120I GGNCC 1 cut(s) 1314
BmiI GGNNCC 5 cut(s) 115, 276, 839, 1315, 1316
BmrFI CCNGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
BmsI GCATC 3 cut(s) 400, 469, 653
BmtI GCTAGC 1 cut(s) 993
BpmI CTGGAG 1 cut(s) 1155
BpuEI CTTGAG 1 cut(s) 814
BsaBI GATNNNNATC 1 cut(s) 1116
BsaJI CCNNGG 4 cut(s) 308, 686, 1132, 1185
BsaWI WCCGGW 2 cut(s) 550, 747
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 5 cut(s) 199, 692, 754, 848, 1052
Bse1I ACTGG 2 cut(s) 869, 1430
Bse3DI GCAATG 1 cut(s) 1046
Bse8I GATNNNNATC 1 cut(s) 1116
BseAI TCCGGA 1 cut(s) 550
BseBI CCWGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
BseDI CCNNGG 4 cut(s) 308, 686, 1132, 1185
BseGI GGATG 4 cut(s) 18, 589, 697, 731
BseJI GATNNNNATC 1 cut(s) 1116
BseLI CCNNNNNNNGG 5 cut(s) 199, 692, 754, 848, 1052
BseMI GCAATG 1 cut(s) 1046
BseMII CTCAG 3 cut(s) 161, 713, 1044
BseNI ACTGG 2 cut(s) 869, 1430
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 2 cut(s) 576, 1296
BsgI GTGCAG 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 5 cut(s) 203, 219, 925, 1045, 1429
BshNI GGYRCC 2 cut(s) 113, 837
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 2 cut(s) 551, 748
BslFI GGGAC 5 cut(s) 66, 149, 709, 1270, 1327
BslI CCNNNNNNNGG 5 cut(s) 199, 692, 754, 848, 1052
BsmAI GTCTC 1 cut(s) 1399
BsmFI GGGAC 5 cut(s) 66, 149, 709, 1270, 1327
BsnI GGCC 5 cut(s) 203, 219, 925, 1045, 1429
Bsp1286I GDGCHC 1 cut(s) 670
Bsp13I TCCGGA 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 7 cut(s) 143, 427, 553, 1020, 1234, 1246, 1418
Bsp19I CCATGG 1 cut(s) 686
BspACI CCGC 4 cut(s) 75, 505, 1109, 1352
BspANI GGCC 5 cut(s) 203, 219, 925, 1045, 1429
BspCNI CTCAG 3 cut(s) 160, 712, 1043
BspEI TCCGGA 1 cut(s) 550
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 5 cut(s) 115, 276, 839, 1315, 1316
BspMI ACCTGC 1 cut(s) 337
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 6 cut(s) 151, 422, 561, 1028, 1229, 1426
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 2 cut(s) 113, 837
BsrDI GCAATG 1 cut(s) 1046
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 2 cut(s) 869, 1430
BssECI CCNNGG 4 cut(s) 308, 686, 1132, 1185
BssMI GATC 7 cut(s) 143, 427, 553, 1020, 1234, 1246, 1418
BssT1I CCWWGG 1 cut(s) 686
Bst2UI CCWGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
Bst4CI ACNGT 4 cut(s) 251, 770, 1087, 1189
Bst6I CTCTTC 3 cut(s) 52, 254, 312
BstAPI GCANNNNNTGC 2 cut(s) 674, 1275
BstAUI TGTACA 1 cut(s) 765
BstC8I GCNNGC 9 cut(s) 122, 652, 656, 857, 974, 991, 1124, 1128, 1276
BstDEI CTNAG 3 cut(s) 147, 699, 1030
BstDSI CCRYGG 2 cut(s) 686, 1185
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 4 cut(s) 18, 589, 697, 731
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 7 cut(s) 146, 430, 556, 1023, 1237, 1249, 1421
BstMAI GTCTC 1 cut(s) 1399
BstMBI GATC 7 cut(s) 143, 427, 553, 1020, 1234, 1246, 1418
BstMWI GCNNNNNNNGC 6 cut(s) 225, 388, 674, 1100, 1275, 1284
BstNI CCWGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
BstNSI RCATGY 3 cut(s) 790, 859, 976
BstSCI CCNGG 6 cut(s) 192, 307, 833, 1051, 1132, 1165
BstSFI CTRYAG 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 576, 1296
BstX2I RGATCY 3 cut(s) 143, 427, 1020
BstYI RGATCY 3 cut(s) 143, 427, 1020
BsuRI GGCC 5 cut(s) 203, 219, 925, 1045, 1429
BtgI CCRYGG 2 cut(s) 686, 1185
BtgZI GCGATG 1 cut(s) 1103
BtsCI GGATG 4 cut(s) 18, 589, 697, 731
BtsI GCAGTG 2 cut(s) 639, 1276
BtsIMutI CAGTG 2 cut(s) 639, 1276
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 9 cut(s) 122, 652, 656, 857, 974, 991, 1124, 1128, 1276
CaiI CAGNNNCTG 1 cut(s) 1275
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 1314
Csp6I GTAC 7 cut(s) 114, 340, 718, 766, 838, 998, 1010
CviAII CATG 8 cut(s) 178, 356, 659, 687, 787, 856, 973, 1013
CviQI GTAC 7 cut(s) 114, 340, 718, 766, 838, 998, 1010
DdeI CTNAG 3 cut(s) 147, 699, 1030
DpnI GATC 7 cut(s) 145, 429, 555, 1022, 1236, 1248, 1420
DpnII GATC 7 cut(s) 143, 427, 553, 1020, 1234, 1246, 1418
DriI GACNNNNNGTC 1 cut(s) 1389
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 3 cut(s) 52, 254, 312
Eam1105I GACNNNNNGTC 1 cut(s) 1389
EarI CTCTTC 3 cut(s) 52, 254, 312
Eco130I CCWWGG 1 cut(s) 686
Eco47I GGWCC 1 cut(s) 1314
Eco57I CTGAAG 1 cut(s) 1260
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 1314
EcoRII CCWGG 6 cut(s) 192, 307, 833, 1051, 1132, 1165
EcoT14I CCWWGG 1 cut(s) 686
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 686
FaeI CATG 8 cut(s) 181, 359, 662, 690, 790, 859, 976, 1016
FaqI GGGAC 5 cut(s) 66, 149, 709, 1270, 1327
FatI CATG 8 cut(s) 177, 355, 658, 686, 786, 855, 972, 1012
FauI CCCGC 1 cut(s) 1345
FauNDI CATATG 1 cut(s) 567
Fnu4HI GCNGC 3 cut(s) 76, 590, 1285
FokI GGATG 4 cut(s) 5, 596, 704, 738
Fsp4HI GCNGC 3 cut(s) 76, 590, 1285
FspBI CTAG 6 cut(s) 69, 240, 759, 990, 995, 1095
GlaI GCGC 1 cut(s) 168
GluI GCNGC 3 cut(s) 76, 590, 1285
GsuI CTGGAG 1 cut(s) 1155
HaeIII GGCC 5 cut(s) 203, 219, 925, 1045, 1429
HapII CCGG 2 cut(s) 551, 748
HhaI GCGC 1 cut(s) 169
Hin1II CATG 8 cut(s) 181, 359, 662, 690, 790, 859, 976, 1016
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 4 cut(s) 484, 697, 1205, 1356
HpaII CCGG 2 cut(s) 551, 748
HphI GGTGA 1 cut(s) 770
Hpy166II GTNNAC 4 cut(s) 247, 451, 668, 766
Hpy188I TCNGA 4 cut(s) 150, 190, 301, 1033
Hpy188III TCNNGA 9 cut(s) 377, 488, 542, 551, 701, 731, 890, 1232, 1238
Hpy8I GTNNAC 4 cut(s) 247, 451, 668, 766
HpyAV CCTTC 5 cut(s) 44, 134, 803, 1011, 1371
HpyCH4III ACNGT 4 cut(s) 251, 770, 1087, 1189
HpyCH4IV ACGT 2 cut(s) 351, 716
HpyF10VI GCNNNNNNNGC 6 cut(s) 225, 388, 674, 1100, 1275, 1284
HpyF3I CTNAG 3 cut(s) 147, 699, 1030
HpySE526I ACGT 2 cut(s) 351, 716
Hsp92II CATG 8 cut(s) 181, 359, 662, 690, 790, 859, 976, 1016
HspAI GCGC 1 cut(s) 167
KflI GGGWCCC 1 cut(s) 1314
Kpn2I TCCGGA 1 cut(s) 550
KpnI GGTACC 2 cut(s) 117, 841
Kzo9I GATC 7 cut(s) 143, 427, 553, 1020, 1234, 1246, 1418
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 827
Lsp1109I GCAGC 2 cut(s) 576, 1296
LweI GCATC 3 cut(s) 400, 469, 653
MaeI CTAG 6 cut(s) 69, 240, 759, 990, 995, 1095
MaeII ACGT 2 cut(s) 351, 716
MaeIII GTNAC 4 cut(s) 230, 410, 1150, 1169
MalI GATC 7 cut(s) 145, 429, 555, 1022, 1236, 1248, 1420
MboI GATC 7 cut(s) 143, 427, 553, 1020, 1234, 1246, 1418
MboII GAAGA 6 cut(s) 39, 271, 329, 455, 1152, 1214
MflI RGATCY 3 cut(s) 143, 427, 1020
MhlI GDGCHC 1 cut(s) 670
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 1 cut(s) 1179
Mph1103I ATGCAT 1 cut(s) 393
MroI TCCGGA 1 cut(s) 550
MseI TTAA 4 cut(s) 207, 336, 978, 1397
MslI CAYNNNNRTG 3 cut(s) 360, 570, 663
MspI CCGG 2 cut(s) 551, 748
MspR9I CCNGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
MvaI CCWGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 6 cut(s) 225, 388, 674, 1100, 1275, 1284
NcoI CCATGG 1 cut(s) 686
NdeI CATATG 1 cut(s) 567
NdeII GATC 7 cut(s) 143, 427, 553, 1020, 1234, 1246, 1418
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 8 cut(s) 181, 359, 662, 690, 790, 859, 976, 1016
NlaIV GGNNCC 5 cut(s) 115, 276, 839, 1315, 1316
NmuCI GTSAC 2 cut(s) 410, 1150
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 3 cut(s) 790, 859, 976
PaeI GCATGC 2 cut(s) 859, 976
PciI ACATGT 1 cut(s) 786
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 484, 1205, 1356
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 3 cut(s) 77, 591, 1286
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
PpuMI RGGWCCY 1 cut(s) 1314
PscI ACATGT 1 cut(s) 786
Psp5II RGGWCCY 1 cut(s) 1314
Psp6I CCWGG 6 cut(s) 192, 307, 833, 1051, 1132, 1165
PspGI CCWGG 6 cut(s) 192, 307, 833, 1051, 1132, 1165
PspN4I GGNNCC 5 cut(s) 115, 276, 839, 1315, 1316
PspPI GGNCC 1 cut(s) 1314
PspPPI RGGWCCY 1 cut(s) 1314
PstNI CAGNNNCTG 1 cut(s) 1275
PsuI RGATCY 3 cut(s) 143, 427, 1020
RsaI GTAC 7 cut(s) 115, 341, 719, 767, 839, 999, 1011
RsaNI GTAC 7 cut(s) 114, 340, 718, 766, 838, 998, 1010
RseI CAYNNNNRTG 3 cut(s) 360, 570, 663
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 4 cut(s) 207, 336, 978, 1397
SatI GCNGC 3 cut(s) 76, 590, 1285
Sau3AI GATC 7 cut(s) 143, 427, 553, 1020, 1234, 1246, 1418
Sau96I GGNCC 1 cut(s) 1314
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 6 cut(s) 194, 309, 835, 1053, 1134, 1167
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 3 cut(s) 400, 469, 653
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 1314
SmiMI CAYNNNNRTG 3 cut(s) 360, 570, 663
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
SphI GCATGC 2 cut(s) 859, 976
SsiI CCGC 4 cut(s) 75, 505, 1109, 1352
SspMI CTAG 6 cut(s) 69, 240, 759, 990, 995, 1095
StyD4I CCNGG 6 cut(s) 192, 307, 833, 1051, 1132, 1165
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 4 cut(s) 251, 770, 1087, 1189
TaiI ACGT 2 cut(s) 354, 719
TaqI TCGA 1 cut(s) 541
TatI WGTACW 4 cut(s) 339, 765, 997, 1009
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 3 cut(s) 484, 1205, 1356
Tru1I TTAA 4 cut(s) 207, 336, 978, 1397
Tru9I TTAA 4 cut(s) 207, 336, 978, 1397
TscAI CASTG 2 cut(s) 646, 1276
TseFI GTSAC 2 cut(s) 410, 1150
TseI GCWGC 2 cut(s) 589, 1284
Tsp45I GTSAC 2 cut(s) 410, 1150
TspGWI ACGGA 2 cut(s) 40, 120
TspRI CASTG 2 cut(s) 646, 1276
Van91I CCANNNNNTGG 1 cut(s) 692
VneI GTGCAC 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 1314
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 2 cut(s) 294, 803
XceI RCATGY 3 cut(s) 790, 859, 976
XspI CTAG 6 cut(s) 69, 240, 759, 990, 995, 1095
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.