FvH4_2g14160

Histidine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
12432723 .. 12435663
2941 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14160.t1

Sequence Viewer

Length: 1431 bp
ATGGAGATTGAGAATGGGGTTGTTGGCCTGGTCGACATTCTCTCCGAGCATTTCGACCCCACCGCCGTGGTCGCCGAGCCTCTCCCTCCCGTCGTCACCACCAACGGCAACCTCATCGGCAAGGTCGCCGAGGATCCCAACAAGCGCGAGATCGTCCTCGGCCGCAACGTCCACACCACCTGCCTCGCCGTCACCGAGCCCGACGCCAACGACGAGTTCACCGGCGACAAGGACGCCTACATGGCCAGCGTCCTCGCTCGCTACCGCAAGACTCTGATGGAGCGCACCAAGCACCATTTAGGGTATCCTTATAATCTGGATTTCGACTATGGAGCTCTGAGCCAGTTGCAGCATTTCTCGATCAACAATCTCGGCGATCCGTTTATTGAGAGCAACTACGGAGTCCATTCGAGGCAGTTTGAGGTGGGAGTTCTTGATTGGTTTGCTCGGCTTTGGGAGATTGAGAAGAATGAGTACTGGGGTTACATCACCAATTGCGGTACCGAAGGAAATCTCCATGGAATTCTAGTTGGGAGAGAAGTGCATCCGGATGGGATTCTATATGCTTCCAAGGATACACATTATTCGATATTTAAAGCAGCGAGAATGTATAGAATGGAATGCGTAAAGGTTGATACTCTGATGTCCGGTGAGATTGATTGCGCAGATTTTAGAGCTAAGCTTCTTGCTAACAAGGACAAACCGGCTATCATTAATGTTAACATAGGAACAACTGTTAAAGGGGCTGTGGATGATCTGGATCTTGTCATAAAAACCCTTGAAGAATGTGGATTCAATCATGATCGGTTCTACATTCACTGTGATGGAGCCTTATTTGGACTCATGATGCCTTTCGTCAAACTTGCACCAAAAGTTTCTTTCAAGAAGCCCATTGGAAGTGTGAGCGTTTCTGGTCACAAGTTTGTAGGATGTCCAATGCCTTGTGGTGTTCAGATAACAAGGCTGGAGCACATTAATGTCCTTTCAAATAATGTAGAATACCTTGCTTCAAGGGATGCGACAATCATGGGAAGCAGGAATGGCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAAGGATTCCAAAAAGAAGTTCAGAAGTGTCTTAGAAATGCTCACTACTTGAAAGACCGTCTTCGTGATGCTGGGATTAGTGCCATGCTGAATGAGCTAAGTAGCACAGTTGTATTTGAGCGGCCTCAAGATGAGGAGTTTGTTCGTAGGTGGCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTGTGAGCGTTGATAAACTGGATGATTTCTTAAACGAACTAGTTGAAAAACGCTCAACATGGTACAAGGATGGGAAAGTTCAGCCTCCATGTATTGCAGCTGATGTAGGGTCTGAGAATTGTGTTTGCGGGAGGCACAAGTGA

Protein Analysis

477

Amino Acids

53.45

Weight (kDa)

6.11

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 186 - 399 2.5e-23 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012320)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AarI CACCTGC 1 cut(s) 188
Acc16I TGCGCA 1 cut(s) 664
Acc36I ACCTGC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 500
AccB1I GGYRCC 1 cut(s) 500
AccBSI CCGCTC 1 cut(s) 1210
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 6 cut(s) 63, 163, 265, 498, 1210, 1416
AclWI GGATC 4 cut(s) 128, 141, 371, 768
AcoI YGGCCR 3 cut(s) 160, 243, 1042
AcsI RAATTY 1 cut(s) 522
AcyI GRCGYC 2 cut(s) 204, 234
AfaI GTAC 4 cut(s) 476, 502, 1067, 1352
AflIII ACRYGT 1 cut(s) 1270
AgsI TTSAA 7 cut(s) 782, 796, 883, 987, 1011, 1141, 1334
AhlI ACTAGT 1 cut(s) 1327
AjnI CCWGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 4 cut(s) 200, 232, 1092, 1124
AleI CACNNNNGTG 1 cut(s) 65
AluBI AGCT 5 cut(s) 335, 677, 682, 1186, 1388
AluI AGCT 5 cut(s) 335, 677, 682, 1186, 1388
Alw21I GWGCWC 2 cut(s) 337, 972
AlwI GGATC 4 cut(s) 128, 141, 371, 768
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 5 cut(s) 25, 160, 243, 1042, 1211
ApeKI GCWGC 3 cut(s) 349, 599, 1385
ApoI RAATTY 1 cut(s) 522
AseI ATTAAT 2 cut(s) 714, 975
Asp718I GGTACC 1 cut(s) 500
AspLEI GCGC 3 cut(s) 147, 285, 665
AsuHPI GGTGA 6 cut(s) 88, 184, 211, 481, 662, 1291
BalI TGGCCA 2 cut(s) 245, 1044
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 500
BanII GRGCYC 2 cut(s) 201, 337
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
BbsI GAAGAC 1 cut(s) 1142
Bbv12I GWGCWC 2 cut(s) 337, 972
BbvI GCAGC 3 cut(s) 361, 611, 1397
BccI CCATC 4 cut(s) 271, 545, 818, 1352
BceAI ACGGC 3 cut(s) 50, 121, 173
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 2 cut(s) 315, 568
BcuI ACTAGT 1 cut(s) 1327
BfaI CTAG 2 cut(s) 527, 1328
BfuAI ACCTGC 1 cut(s) 188
BfuI GTATCC 2 cut(s) 315, 568
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 5 cut(s) 163, 350, 600, 1211, 1386
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 5 cut(s) 164, 351, 601, 1212, 1387
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 29
BmiI GGNNCC 3 cut(s) 135, 502, 829
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 5 cut(s) 553, 837, 1006, 1147, 1272
BmuI ACTGGG 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 1142
BpmI CTGGAG 1 cut(s) 986
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 1200
BsaBI GATNNNNATC 1 cut(s) 759
BsaHI GRCGYC 2 cut(s) 204, 234
BsaJI CCNNGG 6 cut(s) 66, 129, 157, 517, 570, 1255
BsaWI WCCGGW 2 cut(s) 547, 647
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse118I RCCGGY 2 cut(s) 221, 703
Bse1I ACTGG 3 cut(s) 343, 482, 1311
Bse3DI GCAATG 1 cut(s) 1263
Bse8I GATNNNNATC 1 cut(s) 759
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 6 cut(s) 66, 129, 157, 517, 570, 1255
BseGI GGATG 7 cut(s) 544, 556, 757, 935, 1021, 1315, 1363
BseJI GATNNNNATC 1 cut(s) 759
BseMI GCAATG 1 cut(s) 1263
BseMII CTCAG 2 cut(s) 329, 1392
BseNI ACTGG 3 cut(s) 343, 482, 1311
BseRI GAGGAG 1 cut(s) 1238
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 3 cut(s) 361, 611, 1397
BseYI CCCAGC 1 cut(s) 1160
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 5 cut(s) 27, 162, 245, 1044, 1213
BshNI GGYRCC 1 cut(s) 500
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 337, 972
BsiSI CCGG 4 cut(s) 222, 548, 648, 704
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 5 cut(s) 27, 162, 245, 1044, 1213
Bsp1286I GDGCHC 3 cut(s) 201, 337, 972
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 7 cut(s) 133, 150, 360, 376, 754, 760, 802
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 517
BspACI CCGC 6 cut(s) 63, 163, 265, 498, 1210, 1416
BspANI GGCC 5 cut(s) 27, 162, 245, 1044, 1213
BspCNI CTCAG 2 cut(s) 330, 1393
BspEI TCCGGA 1 cut(s) 547
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 2 cut(s) 799, 843
BspLI GGNNCC 3 cut(s) 135, 502, 829
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 4 cut(s) 128, 141, 371, 768
BspT107I GGYRCC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 1210
BsrDI GCAATG 1 cut(s) 1263
BsrFI RCCGGY 2 cut(s) 221, 703
BsrI ACTGG 3 cut(s) 343, 482, 1311
BssAI RCCGGY 2 cut(s) 221, 703
BssECI CCNNGG 6 cut(s) 66, 129, 157, 517, 570, 1255
BssMI GATC 7 cut(s) 133, 150, 360, 376, 754, 760, 802
BssNI GRCGYC 2 cut(s) 204, 234
BssT1I CCWWGG 3 cut(s) 517, 570, 1255
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 4 cut(s) 736, 821, 1148, 1198
BstACI GRCGYC 2 cut(s) 204, 234
BstC8I GCNNGC 3 cut(s) 247, 259, 1252
BstDEI CTNAG 5 cut(s) 338, 678, 1121, 1187, 1401
BstDSI CCRYGG 2 cut(s) 66, 517
BstF5I GGATG 7 cut(s) 544, 556, 757, 935, 1021, 1315, 1363
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 3 cut(s) 147, 285, 665
BstKTI GATC 7 cut(s) 136, 153, 363, 379, 757, 763, 805
BstMBI GATC 7 cut(s) 133, 150, 360, 376, 754, 760, 802
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 5 cut(s) 71, 242, 289, 1041, 1183
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 1274
BstSCI CCNGG 1 cut(s) 27
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 361, 611, 1397
BstV2I GAAGAC 1 cut(s) 1142
BstX2I RGATCY 2 cut(s) 133, 760
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 2 cut(s) 133, 760
BstZI CGGCCG 1 cut(s) 160
BsuI GTATCC 2 cut(s) 315, 568
BsuRI GGCC 5 cut(s) 27, 162, 245, 1044, 1213
BtgI CCRYGG 2 cut(s) 66, 517
BtsCI GGATG 7 cut(s) 544, 556, 757, 935, 1021, 1315, 1363
BtsIMutI CAGTG 1 cut(s) 817
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 3 cut(s) 247, 259, 1252
CciI TCATGA 2 cut(s) 799, 843
CfoI GCGC 3 cut(s) 147, 285, 665
Cfr10I RCCGGY 2 cut(s) 221, 703
CseI GACGC 3 cut(s) 212, 238, 242
Csp6I GTAC 4 cut(s) 475, 501, 1066, 1351
CviQI GTAC 4 cut(s) 475, 501, 1066, 1351
DdeI CTNAG 5 cut(s) 338, 678, 1121, 1187, 1401
DpnI GATC 7 cut(s) 135, 152, 362, 378, 756, 762, 804
DpnII GATC 7 cut(s) 133, 150, 360, 376, 754, 760, 802
DraI TTTAAA 1 cut(s) 595
EaeI YGGCCR 3 cut(s) 160, 243, 1042
EagI CGGCCG 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 335
EclXI CGGCCG 1 cut(s) 160
Eco130I CCWWGG 3 cut(s) 517, 570, 1255
Eco24I GRGCYC 2 cut(s) 201, 337
Eco52I CGGCCG 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 522
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 3 cut(s) 517, 570, 1255
EcoT38I GRGCYC 2 cut(s) 201, 337
ErhI CCWWGG 3 cut(s) 517, 570, 1255
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FauI CCCGC 1 cut(s) 1409
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 5 cut(s) 163, 350, 600, 1211, 1386
FokI GGATG 7 cut(s) 531, 563, 764, 942, 1028, 1322, 1370
FriOI GRGCYC 2 cut(s) 201, 337
Fsp4HI GCNGC 5 cut(s) 163, 350, 600, 1211, 1386
FspBI CTAG 2 cut(s) 527, 1328
FspI TGCGCA 1 cut(s) 664
GlaI GCGC 3 cut(s) 146, 284, 664
GluI GCNGC 5 cut(s) 163, 350, 600, 1211, 1386
GsaI CCCAGC 1 cut(s) 1164
GsuI CTGGAG 1 cut(s) 986
HaeIII GGCC 5 cut(s) 27, 162, 245, 1044, 1213
HapII CCGG 4 cut(s) 222, 548, 648, 704
HgaI GACGC 3 cut(s) 212, 238, 242
HhaI GCGC 3 cut(s) 147, 285, 665
Hin1I GRCGYC 2 cut(s) 204, 234
Hin6I GCGC 3 cut(s) 145, 283, 663
HinP1I GCGC 3 cut(s) 145, 283, 663
HincII GTYRAC 2 cut(s) 34, 721
HindII GTYRAC 2 cut(s) 34, 721
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 6 cut(s) 271, 402, 556, 792, 840, 1095
HpaI GTTAAC 1 cut(s) 721
HpaII CCGG 4 cut(s) 222, 548, 648, 704
HphI GGTGA 6 cut(s) 88, 184, 211, 481, 662, 1291
Hpy166II GTNNAC 5 cut(s) 34, 172, 219, 721, 1068
Hpy188I TCNGA 7 cut(s) 46, 276, 339, 642, 954, 1113, 1402
Hpy8I GTNNAC 5 cut(s) 34, 172, 219, 721, 1068
Hpy99I CGWCG 3 cut(s) 95, 206, 215
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 4 cut(s) 736, 821, 1148, 1198
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 5 cut(s) 349, 544, 866, 1268, 1385
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 242, 289, 1041, 1183
HpyF3I CTNAG 5 cut(s) 338, 678, 1121, 1187, 1401
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 2 cut(s) 204, 234
HspAI GCGC 3 cut(s) 145, 283, 663
Kpn2I TCCGGA 1 cut(s) 547
KpnI GGTACC 1 cut(s) 504
KspAI GTTAAC 1 cut(s) 721
Kzo9I GATC 7 cut(s) 133, 150, 360, 376, 754, 760, 802
LmnI GCTCC 5 cut(s) 280, 332, 827, 967, 1054
Lsp1109I GCAGC 3 cut(s) 361, 611, 1397
LweI GCATC 5 cut(s) 553, 837, 1006, 1147, 1272
MaeI CTAG 2 cut(s) 527, 1328
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 5 cut(s) 94, 190, 482, 914, 1085
MalI GATC 7 cut(s) 135, 152, 362, 378, 756, 762, 804
MbiI CCGCTC 1 cut(s) 1210
MboI GATC 7 cut(s) 133, 150, 360, 376, 754, 760, 802
MboII GAAGA 3 cut(s) 478, 794, 1142
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 2 cut(s) 133, 760
MhlI GDGCHC 3 cut(s) 201, 337, 972
MlsI TGGCCA 2 cut(s) 245, 1044
MluCI AATT 3 cut(s) 493, 522, 1405
MluNI TGGCCA 2 cut(s) 245, 1044
MlyI GAGTC 3 cut(s) 265, 411, 834
Mox20I TGGCCA 2 cut(s) 245, 1044
MroI TCCGGA 1 cut(s) 547
MscI TGGCCA 2 cut(s) 245, 1044
MseI TTAA 6 cut(s) 594, 714, 720, 738, 975, 1319
MslI CAYNNNNRTG 4 cut(s) 65, 549, 822, 975
Msp20I TGGCCA 2 cut(s) 245, 1044
MspA1I CMGCKG 1 cut(s) 1388
MspI CCGG 4 cut(s) 222, 548, 648, 704
MspR9I CCNGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 493
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 5 cut(s) 71, 242, 289, 1041, 1183
NcoI CCATGG 1 cut(s) 517
NdeII GATC 7 cut(s) 133, 150, 360, 376, 754, 760, 802
NlaIV GGNNCC 3 cut(s) 135, 502, 829
NmeAIII GCCGAG 5 cut(s) 100, 138, 154, 351, 427
NmuCI GTSAC 3 cut(s) 94, 190, 914
NsbI TGCGCA 1 cut(s) 664
NspI RCATGY 1 cut(s) 1274
OliI CACNNNNGTG 1 cut(s) 65
PagI TCATGA 2 cut(s) 799, 843
PaqCI CACCTGC 1 cut(s) 188
PciI ACATGT 1 cut(s) 1270
PcsI WCGNNNNNNNCGW 3 cut(s) 165, 192, 210
PctI GAATGC 1 cut(s) 626
PfeI GAWTC 3 cut(s) 556, 792, 1095
PkrI GCNGC 5 cut(s) 164, 351, 601, 1212, 1387
PleI GAGTC 3 cut(s) 265, 410, 834
PpsI GAGTC 3 cut(s) 265, 410, 834
PscI ACATGT 1 cut(s) 1270
PshBI ATTAAT 2 cut(s) 714, 975
PsiI TTATAA 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 1160
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 135, 502, 829
PsuI RGATCY 2 cut(s) 133, 760
PvuII CAGCTG 1 cut(s) 1388
RsaI GTAC 4 cut(s) 476, 502, 1067, 1352
RsaNI GTAC 4 cut(s) 475, 501, 1066, 1351
RseI CAYNNNNRTG 4 cut(s) 65, 549, 822, 975
SacI GAGCTC 1 cut(s) 337
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 6 cut(s) 594, 714, 720, 738, 975, 1319
SatI GCNGC 5 cut(s) 163, 350, 600, 1211, 1386
Sau3AI GATC 7 cut(s) 133, 150, 360, 376, 754, 760, 802
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 3 cut(s) 265, 411, 834
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 3 cut(s) 201, 337, 972
SfaNI GCATC 5 cut(s) 553, 837, 1006, 1147, 1272
SgrAI CRCCGGYG 1 cut(s) 221
SmiMI CAYNNNNRTG 4 cut(s) 65, 549, 822, 975
SmlI CTYRAG 1 cut(s) 1215
SmoI CTYRAG 1 cut(s) 1215
SpeI ACTAGT 1 cut(s) 1327
Sse9I AATT 3 cut(s) 493, 522, 1405
SsiI CCGC 6 cut(s) 63, 163, 265, 498, 1210, 1416
SspMI CTAG 2 cut(s) 527, 1328
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 3 cut(s) 517, 570, 1255
TaaI ACNGT 4 cut(s) 736, 821, 1148, 1198
TaiI ACGT 1 cut(s) 171
TaqI TCGA 6 cut(s) 33, 54, 324, 359, 410, 587
TasI AATT 3 cut(s) 493, 522, 1405
TatI WGTACW 1 cut(s) 474
TauI GCSGC 2 cut(s) 165, 1213
TfiI GAWTC 3 cut(s) 556, 792, 1095
Tru1I TTAA 6 cut(s) 594, 714, 720, 738, 975, 1319
Tru9I TTAA 6 cut(s) 594, 714, 720, 738, 975, 1319
TscAI CASTG 1 cut(s) 824
TseFI GTSAC 3 cut(s) 94, 190, 914
TseI GCWGC 3 cut(s) 349, 599, 1385
Tsp45I GTSAC 3 cut(s) 94, 190, 914
TspGWI ACGGA 2 cut(s) 369, 414
TspRI CASTG 1 cut(s) 824
VspI ATTAAT 2 cut(s) 714, 975
XapI RAATTY 1 cut(s) 522
XceI RCATGY 1 cut(s) 1274
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 2 cut(s) 527, 1328
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.