FvH4_2g14440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015934
Physical Location & Seq
Reverse (-)
12714657 .. 12717716
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14440.t5

Sequence Viewer

Length: 417 bp
ATGGTGGCCTCCTCGTCTTCTTCGTTGTCCTCGTCGGACTCGTCGTCGGGTTCTCGGCGCCGTCATCGCCGCCGCAACAACCGTAGCCGCCGTGACAGGGATAAAGACAAAGACAAAGATGCCCTCAAGATCCGGAAGAGGACCAGCCGTAGCTCCCACGGCAAACGACGCCGTAGACACCGCCACCACCACTCGTCTTCTTCCGATTCTTACTCGTCGTCGTCCGATTCCGACGATTCCAGAAGTGATAGCTCTTCAGACAGTGAACCGGAAACATCTAGTCAGTCAAAGAGGCACAAGAAGAATGACAGACAGAAGAAGAGCAAAGAAAAGGAGCAGAGCAAGAGTCATCGGCATAAACATCATAGGAGTAAACTAAAAGAGCTGGGATCTGCAACATGTTTACTGGGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.85

Weight (kDa)

11.19

Isoelectric Point (pI)

121.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27860 AT5G27860
fragaria_vesca FvH4_2g14440
malus_domestica MD10G1017700.v1.1
prunus_persica Prupe.8G021600_v2.0.a1
pyrus_communis pycom10g01140
rosa_chinensis RchiOBHm_Chr6g0276771
rosa_laevigata RLG00000013363
rosa_multiflora Rmu_sc0004481.1_g000016
rosa_roxburghii Rroxscaffold_7G00191980
rosa_rugosa Rorug06G0104100
rosa_samantha Rh6AG214200 Rh6BG219000 Rh6CG221700
rosa_wichuraiana Rw6G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 132
AciI CCGC 4 cut(s) 70, 73, 88, 181
AclWI GGATC 2 cut(s) 124, 397
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 2 cut(s) 58, 169
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 398
AhdI GACNNNNNGTC 1 cut(s) 43
AluBI AGCT 3 cut(s) 153, 252, 385
AluI AGCT 3 cut(s) 153, 252, 385
AlwI GGATC 2 cut(s) 124, 397
Aor13HI TCCGGA 1 cut(s) 132
AoxI GGCC 1 cut(s) 6
AspLEI GCGC 2 cut(s) 60, 413
AspS9I GGNCC 1 cut(s) 141
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 57
BbsI GAAGAC 2 cut(s) 9, 189
BceAI ACGGC 5 cut(s) 45, 75, 132, 156, 175
BfaI CTAG 1 cut(s) 279
BfoI RGCGCY 2 cut(s) 61, 414
BisI GCNGC 3 cut(s) 70, 73, 88
BlsI GCNGC 3 cut(s) 71, 74, 89
Bme18I GGWCC 1 cut(s) 141
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 9, 189
BpuEI CTTGAG 1 cut(s) 110
BsaHI GRCGYC 2 cut(s) 58, 169
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 2 cut(s) 132, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 411
BseYI CCCAGC 1 cut(s) 385
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 133, 269
BslI CCNNNNNNNGG 1 cut(s) 97
BsnI GGCC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 132
Bsp143I GATC 2 cut(s) 129, 389
BspACI CCGC 4 cut(s) 70, 73, 88, 181
BspANI GGCC 1 cut(s) 8
BspEI TCCGGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 2 cut(s) 124, 397
BspQI GCTCTTC 2 cut(s) 259, 314
BspT107I GGYRCC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 2 cut(s) 129, 389
BssNI GRCGYC 2 cut(s) 58, 169
Bst4CI ACNGT 2 cut(s) 83, 263
Bst6I CTCTTC 3 cut(s) 131, 259, 314
BstACI GRCGYC 2 cut(s) 58, 169
BstDSI CCRYGG 1 cut(s) 157
BstH2I RGCGCY 2 cut(s) 61, 414
BstHHI GCGC 2 cut(s) 60, 413
BstKTI GATC 2 cut(s) 132, 392
BstMBI GATC 2 cut(s) 129, 389
BstMWI GCNNNNNNNGC 3 cut(s) 66, 159, 168
BstNSI RCATGY 1 cut(s) 402
BstV2I GAAGAC 2 cut(s) 9, 189
BstX2I RGATCY 2 cut(s) 129, 389
BstYI RGATCY 2 cut(s) 129, 389
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 268
CfoI GCGC 2 cut(s) 60, 413
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 177
CviAII CATG 1 cut(s) 399
CviJI RGCY 6 cut(s) 8, 87, 147, 153, 252, 385
CviKI_1 RGCY 6 cut(s) 8, 87, 147, 153, 252, 385
DinI GGCGCC 1 cut(s) 59
DpnI GATC 2 cut(s) 131, 391
DpnII GATC 2 cut(s) 129, 389
DriI GACNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 3 cut(s) 131, 259, 314
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 3 cut(s) 131, 259, 314
Eco47I GGWCC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 59
EheI GGCGCC 1 cut(s) 59
FaeI CATG 1 cut(s) 402
FaiI YATR 3 cut(s) 357, 366, 400
FatI CATG 1 cut(s) 398
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 70, 73, 88
Fsp4HI GCNGC 3 cut(s) 70, 73, 88
FspBI CTAG 1 cut(s) 279
GlaI GCGC 2 cut(s) 59, 412
GluI GCNGC 3 cut(s) 70, 73, 88
GsaI CCCAGC 1 cut(s) 389
HaeII RGCGCY 2 cut(s) 61, 414
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 133, 269
HgaI GACGC 1 cut(s) 177
HhaI GCGC 2 cut(s) 60, 413
Hin1I GRCGYC 2 cut(s) 58, 169
Hin1II CATG 1 cut(s) 402
Hin6I GCGC 2 cut(s) 58, 411
HinP1I GCGC 2 cut(s) 58, 411
HinfI GANTC 5 cut(s) 38, 206, 227, 236, 346
HpaII CCGG 2 cut(s) 133, 269
Hpy166II GTNNAC 4 cut(s) 176, 266, 374, 404
Hpy188I TCNGA 5 cut(s) 37, 205, 226, 232, 259
Hpy188III TCNNGA 3 cut(s) 127, 133, 240
Hpy8I GTNNAC 4 cut(s) 176, 266, 374, 404
Hpy99I CGWCG 7 cut(s) 37, 46, 49, 171, 220, 223, 236
HpyCH4III ACNGT 2 cut(s) 83, 263
HpyCH4V TGCA 1 cut(s) 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 159, 168
Hsp92I GRCGYC 2 cut(s) 58, 169
Hsp92II CATG 1 cut(s) 402
HspAI GCGC 2 cut(s) 58, 411
KasI GGCGCC 1 cut(s) 57
Kpn2I TCCGGA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 129, 389
LguI GCTCTTC 2 cut(s) 259, 314
LmnI GCTCC 2 cut(s) 158, 334
LpnPI CCDG 7 cut(s) 82, 146, 157, 253, 282, 371, 392
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 131, 391
MboI GATC 2 cut(s) 129, 389
MboII GAAGA 9 cut(s) 9, 12, 148, 189, 192, 246, 313, 328, 331
MflI RGATCY 2 cut(s) 129, 389
Mly113I GGCGCC 1 cut(s) 58
MlyI GAGTC 2 cut(s) 32, 355
MmeI TCCRAC 2 cut(s) 15, 255
MnlI CCTC 6 cut(s) 19, 22, 40, 132, 134, 285
MroI TCCGGA 1 cut(s) 132
MspI CCGG 2 cut(s) 133, 269
MwoI GCNNNNNNNGC 3 cut(s) 66, 159, 168
NarI GGCGCC 1 cut(s) 58
NdeII GATC 2 cut(s) 129, 389
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 59
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 402
PciI ACATGT 1 cut(s) 398
PciSI GCTCTTC 2 cut(s) 259, 314
PcsI WCGNNNNNNNCGW 4 cut(s) 20, 29, 38, 41
PfeI GAWTC 3 cut(s) 206, 227, 236
PkrI GCNGC 3 cut(s) 71, 74, 89
PleI GAGTC 2 cut(s) 32, 354
PluTI GGCGCC 1 cut(s) 61
PpsI GAGTC 2 cut(s) 32, 354
PscI ACATGT 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 2 cut(s) 129, 389
SapI GCTCTTC 2 cut(s) 259, 314
SatI GCNGC 3 cut(s) 70, 73, 88
Sau3AI GATC 2 cut(s) 129, 389
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 2 cut(s) 32, 355
SetI ASST 3 cut(s) 155, 254, 387
SfaNI GCATC 1 cut(s) 109
SfoI GGCGCC 1 cut(s) 59
SinI GGWCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 4 cut(s) 70, 73, 88, 181
SspDI GGCGCC 1 cut(s) 57
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 83, 263
TauI GCSGC 3 cut(s) 72, 75, 90
TfiI GAWTC 3 cut(s) 206, 227, 236
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 141
XceI RCATGY 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.