RchiOBHm_Chr6g0276771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015934
Physical Location & Seq
Reverse (-)
39078037 .. 39080344
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24828

Sequence Viewer

Length: 576 bp
ATGGTGGCCTCCTCGTCTTCTTCGCTGTCGTCGGACTCGTCGTCTGGGTCTCGGCGCCGTCATCGCCGACACAACCGCAGCCGCCGAGACAAGGATAAAGAAAAAGACAAAGATGCCCTCAAGATCCGAAAGAGGACCAGTCGTAGCTCCCACGCCAAACGACGTCGTAGGCACCGCCACCACCAGTCCTCATCTTCTTCTGATTCCTACTCCTCCTCGTCTGATTCCGACGATTCCAGAAATGATAGCTCTTCAGACAGTGAGCCTGAAACATCTAGTCAGTCAAAGAGGCACAAGAAGAATGACAGACAGAAGAAGAGCAAAGAAAAGGACCAGAGCAAGAGTCATCGGCATAAACGTCATAGGAGTAAACTAAAAGAGAAGCAGCAGAATGAGAGAAATAGCAGCCCTGTTCGGCTTTCAAAGTTTTTAGGGCGTGACAAAGATGATGGAGTGCGTCGCAGCGCTGTCTCTGGCAAAAAGATTCTGTTGAAACTTGACAAAACAAAGGAGGACAAGGCCGCAGAAAACAAACGGAATGAATTGCTGAAGTTCTTGAATGCTAGTTTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

22.17

Weight (kDa)

10.84

Isoelectric Point (pI)

107.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27860 AT5G27860
fragaria_vesca FvH4_2g14440
malus_domestica MD10G1017700.v1.1
prunus_persica Prupe.8G021600_v2.0.a1
pyrus_communis pycom10g01140
rosa_chinensis RchiOBHm_Chr6g0276771
rosa_laevigata RLG00000013363
rosa_multiflora Rmu_sc0004481.1_g000016
rosa_roxburghii Rroxscaffold_7G00191980
rosa_rugosa Rorug06G0104100
rosa_samantha Rh6AG214200 Rh6BG219000 Rh6CG221700
rosa_wichuraiana Rw6G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 166
AccB1I GGYRCC 2 cut(s) 54, 171
AciI CCGC 4 cut(s) 76, 82, 175, 522
AclWI GGATC 1 cut(s) 118
AcuI CTGAAG 2 cut(s) 237, 569
AcyI GRCGYC 2 cut(s) 55, 163
AfeI AGCGCT 1 cut(s) 466
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 3 cut(s) 423, 493, 559
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 2 cut(s) 147, 249
AluI AGCT 2 cut(s) 147, 249
Alw26I GTCTC 3 cut(s) 54, 81, 475
AlwI GGATC 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 466
AoxI GGCC 2 cut(s) 6, 519
ApeKI GCWGC 4 cut(s) 78, 385, 405, 462
AspLEI GCGC 2 cut(s) 57, 467
AspS9I GGNCC 2 cut(s) 135, 331
AvaII GGWCC 2 cut(s) 135, 331
BanI GGYRCC 2 cut(s) 54, 171
BbsI GAAGAC 1 cut(s) 9
BbvI GCAGC 4 cut(s) 90, 397, 417, 474
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 3 cut(s) 54, 81, 475
BfaI CTAG 2 cut(s) 276, 564
BfoI RGCGCY 2 cut(s) 58, 468
BisI GCNGC 6 cut(s) 79, 82, 386, 406, 463, 522
BlsI GCNGC 6 cut(s) 80, 83, 387, 407, 464, 523
Bme18I GGWCC 2 cut(s) 135, 331
BmeRI GACNNNNNGTC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 135, 331
BmiI GGNNCC 2 cut(s) 56, 173
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 104
BsaHI GRCGYC 2 cut(s) 55, 163
BsaI GGTCTC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 138, 184
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 2 cut(s) 138, 184
BseRI GAGGAG 2 cut(s) 202, 205
BseXI GCAGC 4 cut(s) 90, 397, 417, 474
BshFI GGCC 2 cut(s) 8, 521
BshNI GGYRCC 2 cut(s) 54, 171
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 3 cut(s) 54, 81, 475
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 2 cut(s) 8, 521
Bso31I GGTCTC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 4 cut(s) 76, 82, 175, 522
BspANI GGCC 2 cut(s) 8, 521
BspLI GGNNCC 2 cut(s) 56, 173
BspPI GGATC 1 cut(s) 118
BspQI GCTCTTC 2 cut(s) 256, 311
BspT107I GGYRCC 2 cut(s) 54, 171
BspTNI GGTCTC 1 cut(s) 54
BsrI ACTGG 2 cut(s) 138, 184
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 2 cut(s) 55, 163
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 256, 311
BstACI GRCGYC 2 cut(s) 55, 163
BstH2I RGCGCY 2 cut(s) 58, 468
BstHHI GCGC 2 cut(s) 57, 467
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 3 cut(s) 54, 81, 475
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstV1I GCAGC 4 cut(s) 90, 397, 417, 474
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 8, 521
BtgZI GCGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 265
CfoI GCGC 2 cut(s) 57, 467
Cfr13I GGNCC 2 cut(s) 135, 331
CseI GACGC 1 cut(s) 446
CviJI RGCY 8 cut(s) 8, 81, 147, 249, 265, 408, 418, 521
CviKI_1 RGCY 8 cut(s) 8, 81, 147, 249, 265, 408, 418, 521
DinI GGCGCC 1 cut(s) 56
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DriI GACNNNNNGTC 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 256, 311
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 2 cut(s) 256, 311
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 135, 331
Eco47III AGCGCT 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 237, 569
EgeI GGCGCC 1 cut(s) 56
EheI GGCGCC 1 cut(s) 56
FaiI YATR 2 cut(s) 354, 363
Fnu4HI GCNGC 6 cut(s) 79, 82, 386, 406, 463, 522
Fsp4HI GCNGC 6 cut(s) 79, 82, 386, 406, 463, 522
FspBI CTAG 2 cut(s) 276, 564
GlaI GCGC 2 cut(s) 56, 466
GluI GCNGC 6 cut(s) 79, 82, 386, 406, 463, 522
HaeII RGCGCY 2 cut(s) 58, 468
HaeIII GGCC 2 cut(s) 8, 521
HgaI GACGC 1 cut(s) 446
HhaI GCGC 2 cut(s) 57, 467
Hin1I GRCGYC 2 cut(s) 55, 163
Hin6I GCGC 2 cut(s) 55, 465
HinP1I GCGC 2 cut(s) 55, 465
HinfI GANTC 6 cut(s) 35, 203, 224, 233, 343, 484
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 6 cut(s) 34, 128, 202, 223, 229, 256
Hpy188III TCNNGA 3 cut(s) 121, 237, 556
Hpy8I GTNNAC 1 cut(s) 371
Hpy99I CGWCG 6 cut(s) 34, 43, 165, 168, 233, 462
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 163, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpySE526I ACGT 2 cut(s) 163, 358
Hsp92I GRCGYC 2 cut(s) 55, 163
HspAI GCGC 2 cut(s) 55, 465
KasI GGCGCC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 123
LguI GCTCTTC 2 cut(s) 256, 311
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 8 cut(s) 30, 151, 197, 250, 279, 347, 423, 459
Lsp1109I GCAGC 4 cut(s) 90, 397, 417, 474
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 276, 564
MaeII ACGT 2 cut(s) 163, 358
MaeIII GTNAC 1 cut(s) 437
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 8 cut(s) 9, 12, 186, 189, 243, 310, 325, 328
MflI RGATCY 1 cut(s) 123
MluCI AATT 1 cut(s) 542
Mly113I GGCGCC 1 cut(s) 55
MlyI GAGTC 2 cut(s) 29, 352
MmeI TCCRAC 2 cut(s) 12, 252
MnlI CCTC 9 cut(s) 19, 22, 126, 128, 199, 223, 226, 282, 505
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 1 cut(s) 63
NarI GGCGCC 1 cut(s) 55
NdeII GATC 1 cut(s) 123
NlaIV GGNNCC 2 cut(s) 56, 173
NmeAIII GCCGAG 2 cut(s) 31, 110
NmuCI GTSAC 1 cut(s) 437
PciSI GCTCTTC 2 cut(s) 256, 311
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 38, 355
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 4 cut(s) 203, 224, 233, 484
PkrI GCNGC 6 cut(s) 80, 83, 387, 407, 464, 523
PleI GAGTC 2 cut(s) 29, 351
PluTI GGCGCC 1 cut(s) 58
PpsI GAGTC 2 cut(s) 29, 351
PspN4I GGNNCC 2 cut(s) 56, 173
PspPI GGNCC 2 cut(s) 135, 331
PsuI RGATCY 1 cut(s) 123
SapI GCTCTTC 2 cut(s) 256, 311
SatI GCNGC 6 cut(s) 79, 82, 386, 406, 463, 522
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 135, 331
SchI GAGTC 2 cut(s) 29, 352
SetI ASST 4 cut(s) 149, 166, 251, 361
SfaNI GCATC 1 cut(s) 103
SfoI GGCGCC 1 cut(s) 56
SinI GGWCC 2 cut(s) 135, 331
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 542
SsiI CCGC 4 cut(s) 76, 82, 175, 522
SspDI GGCGCC 1 cut(s) 54
SspMI CTAG 2 cut(s) 276, 564
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 2 cut(s) 166, 361
TaqI TCGA 1 cut(s) 570
TasI AATT 1 cut(s) 542
TauI GCSGC 2 cut(s) 84, 524
TfiI GAWTC 4 cut(s) 203, 224, 233, 484
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 4 cut(s) 78, 385, 405, 462
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 555
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 135, 331
XspI CTAG 2 cut(s) 276, 564
ZraI GACGTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.