Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004481.1

Orthogroup ID

OG0015934

Physical Location & Seq

Genomic Coordinates Forward (+)

67128 .. 68941

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004481.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggtggcctcctcgtcttcttcgctgtcgttggactcgtcgtctgggtctcggcgccgtcatcgccgacacaaccgcagccgccgagacaaggataaagaaaaagacaaagatggacatttatcaagaagcagcactgataccaacagtagcctaatattttgctcggaaggatcaatatctcataatattaagcacgccattggagacctgcataatgcgtcacagttaaaatttctactatggctgaatcacctgaataagcagcagaatgagagaaatagcagccctgttcggctttcaaagtttttagggcgtgacaaagatgatggagtgcgtcgcagcgctgtctctggcaaaaagattctgttgaaacttgacaaaacaaaggaggacaaggccgcagaaaacaaacggaatgaattgctgaagttcttgaatgctagtttcgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.13

Weight (kDa)

10.24

Isoelectric Point (pI)

77.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27860 AT5G27860
fragaria_vesca	FvH4_2g14440
malus_domestica	MD10G1017700.v1.1
prunus_persica	Prupe.8G021600_v2.0.a1
pyrus_communis	pycom10g01140
rosa_chinensis	RchiOBHm_Chr6g0276771
rosa_laevigata	RLG00000013363
rosa_multiflora	Rmu_sc0004481.1_g000016
rosa_roxburghii	Rroxscaffold_7G00191980
rosa_rugosa	Rorug06G0104100
rosa_samantha	Rh6AG214200 Rh6BG219000 Rh6CG221700
rosa_wichuraiana	Rw6G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	3 cut(s)	76, 82, 402
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	55
AfeI	AGCGCT	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	303, 373, 439
AhdI	GACNNNNNGTC	1 cut(s)	40
Alw26I	GTCTC	4 cut(s)	54, 81, 201, 355
AlwI	GGATC	1 cut(s)	181
Aor51HI	AGCGCT	1 cut(s)	346
AoxI	GGCC	2 cut(s)	6, 399
ApeKI	GCWGC	5 cut(s)	78, 132, 265, 285, 342
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	57, 347
AsuHPI	GGTGA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	9
BbvI	GCAGC	5 cut(s)	90, 144, 277, 297, 354
BccI	CCATC	2 cut(s)	107, 323
BceAI	ACGGC	1 cut(s)	42
BcoDI	GTCTC	4 cut(s)	54, 81, 201, 355
BfaI	CTAG	1 cut(s)	444
BfoI	RGCGCY	2 cut(s)	58, 348
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	7 cut(s)	79, 82, 133, 266, 286, 343, 402
BlsI	GCNGC	7 cut(s)	80, 83, 134, 267, 287, 344, 403
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	55
BsaI	GGTCTC	2 cut(s)	54, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseXI	GCAGC	5 cut(s)	90, 144, 277, 297, 354
BshFI	GGCC	2 cut(s)	8, 401
BshNI	GGYRCC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	4 cut(s)	54, 81, 201, 355
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	8, 401
Bso31I	GGTCTC	2 cut(s)	54, 201
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	3 cut(s)	76, 82, 402
BspANI	GGCC	2 cut(s)	8, 401
BspLI	GGNNCC	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	54
BspTNI	GGTCTC	2 cut(s)	54, 201
BssMI	GATC	1 cut(s)	173
BssNI	GRCGYC	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	149, 228
BstACI	GRCGYC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	198
BstH2I	RGCGCY	2 cut(s)	58, 348
BstHHI	GCGC	2 cut(s)	57, 347
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	4 cut(s)	54, 81, 201, 355
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstV1I	GCAGC	5 cut(s)	90, 144, 277, 297, 354
BstV2I	GAAGAC	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	8, 401
BtgZI	GCGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	198
CfoI	GCGC	2 cut(s)	57, 347
CseI	GACGC	2 cut(s)	210, 326
CviJI	RGCY	7 cut(s)	8, 81, 153, 247, 288, 298, 401
CviKI_1	RGCY	7 cut(s)	8, 81, 153, 247, 288, 298, 401
DinI	GGCGCC	1 cut(s)	56
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1105I	GACNNNNNGTC	1 cut(s)	40
Eco31I	GGTCTC	2 cut(s)	54, 201
Eco47III	AGCGCT	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	449
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
FaiI	YATR	3 cut(s)	186, 216, 244
Fnu4HI	GCNGC	7 cut(s)	79, 82, 133, 266, 286, 343, 402
Fsp4HI	GCNGC	7 cut(s)	79, 82, 133, 266, 286, 343, 402
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	2 cut(s)	56, 346
GluI	GCNGC	7 cut(s)	79, 82, 133, 266, 286, 343, 402
HaeII	RGCGCY	2 cut(s)	58, 348
HaeIII	GGCC	2 cut(s)	8, 401
HgaI	GACGC	2 cut(s)	210, 326
HhaI	GCGC	2 cut(s)	57, 347
Hin1I	GRCGYC	1 cut(s)	55
Hin6I	GCGC	2 cut(s)	55, 345
HinP1I	GCGC	2 cut(s)	55, 345
HinfI	GANTC	3 cut(s)	35, 250, 364
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	126, 436
Hpy99I	CGWCG	2 cut(s)	43, 342
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	149, 228
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	55
HspAI	GCGC	2 cut(s)	55, 345
KasI	GGCGCC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	173
LpnPI	CCDG	5 cut(s)	30, 224, 269, 303, 339
Lsp1109I	GCAGC	5 cut(s)	90, 144, 277, 297, 354
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	2 cut(s)	222, 317
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	2 cut(s)	9, 12
MluCI	AATT	2 cut(s)	233, 422
Mly113I	GGCGCC	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	3 cut(s)	19, 22, 385
MseI	TTAA	2 cut(s)	192, 230
Mva1269I	GAATGC	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	63
NarI	GGCGCC	1 cut(s)	55
NdeII	GATC	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	2 cut(s)	31, 110
NmuCI	GTSAC	2 cut(s)	222, 317
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	250, 364
PkrI	GCNGC	7 cut(s)	80, 83, 134, 267, 287, 344, 403
PleI	GAGTC	1 cut(s)	29
PluTI	GGCGCC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	192, 230
SatI	GCNGC	7 cut(s)	79, 82, 133, 266, 286, 343, 402
Sau3AI	GATC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	29
SetI	ASST	2 cut(s)	213, 258
SfoI	GGCGCC	1 cut(s)	56
Sse9I	AATT	2 cut(s)	233, 422
SsiI	CCGC	3 cut(s)	76, 82, 402
SspDI	GGCGCC	1 cut(s)	54
SspI	AATATT	2 cut(s)	159, 190
SspMI	CTAG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	149, 228
TaqI	TCGA	1 cut(s)	450
TasI	AATT	2 cut(s)	233, 422
TauI	GCSGC	2 cut(s)	84, 404
TfiI	GAWTC	2 cut(s)	250, 364
Tru1I	TTAA	2 cut(s)	192, 230
Tru9I	TTAA	2 cut(s)	192, 230
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	222, 317
TseI	GCWGC	5 cut(s)	78, 132, 265, 285, 342
Tsp45I	GTSAC	2 cut(s)	222, 317
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.