Rroxscaffold_7G00191980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015934
Physical Location & Seq
Forward (+)
32915489 .. 32917636
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191980.1

Sequence Viewer

Length: 531 bp
ATGGTGGCCTCCTCGTCTTCTTCGCTGTCGTCGGACTCGTCGTCCGGGTCTCGGCGCCGTCATCGCCGGCACAACCGCAGCCGCCGAGACAAGGATAAAGAAAAAGACAAAGATGCCCTCAAGATCCGAAAGAGGACCAGTCGTAGCTCCCACGCCAAACGACGTCGTAGGCACCGCCACCACCACTCCTCATCTTCTTCTGATTCCTACTCCTCGTCGTCTGATTCCGACGATTCCAGAAATGATAGCTCTTCAGACAGTGAGCCTGAAACATCTAGTCAGTCAAAGAGGCACAAGAAGAATGACAGACAGAAGAAGAGCAAAGAAAAGAACCAGAGCAAGGGTCATCGGCATAAACGTCATAGGAGTAAACTACAAGAGTTTTTAGGGCGTGACAAAGATGATGGAGTGCGTCGCAGTGCTGTCTCTGGCAAAAAGATTCTGTTGAAACTTGACAAAACAAAGGAGGACAAGGCCGCAGAAAACAAACGGAATGAATTGCTGAAGTTCTTGAATGCTAGTTTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.39

Weight (kDa)

10.81

Isoelectric Point (pI)

108.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27860 AT5G27860
fragaria_vesca FvH4_2g14440
malus_domestica MD10G1017700.v1.1
prunus_persica Prupe.8G021600_v2.0.a1
pyrus_communis pycom10g01140
rosa_chinensis RchiOBHm_Chr6g0276771
rosa_laevigata RLG00000013363
rosa_multiflora Rmu_sc0004481.1_g000016
rosa_roxburghii Rroxscaffold_7G00191980
rosa_rugosa Rorug06G0104100
rosa_samantha Rh6AG214200 Rh6BG219000 Rh6CG221700
rosa_wichuraiana Rw6G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 166
AccB1I GGYRCC 2 cut(s) 54, 171
AciI CCGC 4 cut(s) 76, 82, 175, 477
AclWI GGATC 1 cut(s) 118
AcuI CTGAAG 2 cut(s) 237, 524
AcyI GRCGYC 2 cut(s) 55, 163
AfiI CCNNNNNNNGG 3 cut(s) 51, 91, 340
AgsI TTSAA 2 cut(s) 448, 514
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 2 cut(s) 147, 249
AluI AGCT 2 cut(s) 147, 249
Alw26I GTCTC 3 cut(s) 54, 81, 430
AlwI GGATC 1 cut(s) 118
AoxI GGCC 2 cut(s) 6, 474
ApeKI GCWGC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 46
AvaII GGWCC 1 cut(s) 135
BanI GGYRCC 2 cut(s) 54, 171
BbsI GAAGAC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 54, 81, 430
BfaI CTAG 2 cut(s) 276, 519
BfoI RGCGCY 1 cut(s) 58
BisI GCNGC 3 cut(s) 79, 82, 477
BlsI GCNGC 3 cut(s) 80, 83, 478
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 135
BmeRI GACNNNNNGTC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 56, 173
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 46
BsaHI GRCGYC 2 cut(s) 55, 163
BsaI GGTCTC 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 91, 340
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 51, 91, 340
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 178, 202
BseXI GCAGC 1 cut(s) 90
BshFI GGCC 2 cut(s) 8, 476
BshNI GGYRCC 2 cut(s) 54, 171
BsiSI CCGG 2 cut(s) 45, 67
BslI CCNNNNNNNGG 3 cut(s) 51, 91, 340
BsmAI GTCTC 3 cut(s) 54, 81, 430
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 2 cut(s) 8, 476
Bso31I GGTCTC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 4 cut(s) 76, 82, 175, 477
BspANI GGCC 2 cut(s) 8, 476
BspLI GGNNCC 2 cut(s) 56, 173
BspPI GGATC 1 cut(s) 118
BspQI GCTCTTC 2 cut(s) 256, 311
BspT107I GGYRCC 2 cut(s) 54, 171
BspTNI GGTCTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 66
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 2 cut(s) 55, 163
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 256, 311
BstACI GRCGYC 2 cut(s) 55, 163
BstC8I GCNNGC 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 3 cut(s) 54, 81, 430
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 8, 476
BtgZI GCGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 265, 424
Cac8I GCNNGC 1 cut(s) 68
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 401
CviJI RGCY 6 cut(s) 8, 81, 147, 249, 265, 476
CviKI_1 RGCY 6 cut(s) 8, 81, 147, 249, 265, 476
DinI GGCGCC 1 cut(s) 56
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DriI GACNNNNNGTC 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 256, 311
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 2 cut(s) 256, 311
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 237, 524
EgeI GGCGCC 1 cut(s) 56
EheI GGCGCC 1 cut(s) 56
FaiI YATR 2 cut(s) 354, 363
Fnu4HI GCNGC 3 cut(s) 79, 82, 477
Fsp4HI GCNGC 3 cut(s) 79, 82, 477
FspBI CTAG 2 cut(s) 276, 519
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 79, 82, 477
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 2 cut(s) 8, 476
HapII CCGG 2 cut(s) 45, 67
HgaI GACGC 1 cut(s) 401
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 2 cut(s) 55, 163
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 5 cut(s) 35, 203, 224, 233, 439
HpaII CCGG 2 cut(s) 45, 67
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 6 cut(s) 34, 128, 202, 223, 229, 256
Hpy188III TCNNGA 3 cut(s) 121, 237, 511
Hpy8I GTNNAC 1 cut(s) 371
Hpy99I CGWCG 7 cut(s) 34, 43, 165, 168, 220, 233, 417
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 163, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpySE526I ACGT 2 cut(s) 163, 358
Hsp92I GRCGYC 2 cut(s) 55, 163
HspAI GCGC 1 cut(s) 55
KasI GGCGCC 1 cut(s) 54
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 123
LguI GCTCTTC 2 cut(s) 256, 311
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 58, 80, 151, 250, 279, 347, 414
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 276, 519
MaeII ACGT 2 cut(s) 163, 358
MaeIII GTNAC 1 cut(s) 392
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 8 cut(s) 9, 12, 186, 189, 243, 310, 325, 328
MflI RGATCY 1 cut(s) 123
MluCI AATT 1 cut(s) 497
Mly113I GGCGCC 1 cut(s) 55
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 12, 252
MnlI CCTC 8 cut(s) 19, 22, 126, 128, 199, 223, 282, 460
MroNI GCCGGC 1 cut(s) 66
MspI CCGG 2 cut(s) 45, 67
MspR9I CCNGG 1 cut(s) 46
Mva1269I GAATGC 1 cut(s) 520
MwoI GCNNNNNNNGC 1 cut(s) 63
NaeI GCCGGC 1 cut(s) 68
NarI GGCGCC 1 cut(s) 55
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 66
NlaIV GGNNCC 2 cut(s) 56, 173
NmeAIII GCCGAG 2 cut(s) 31, 110
NmuCI GTSAC 1 cut(s) 392
PciSI GCTCTTC 2 cut(s) 256, 311
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 38, 355
PctI GAATGC 1 cut(s) 520
PdiI GCCGGC 1 cut(s) 68
PfeI GAWTC 4 cut(s) 203, 224, 233, 439
PkrI GCNGC 3 cut(s) 80, 83, 478
PleI GAGTC 1 cut(s) 29
PluTI GGCGCC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 56, 173
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 123
SapI GCTCTTC 2 cut(s) 256, 311
SatI GCNGC 3 cut(s) 79, 82, 477
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 46
SetI ASST 4 cut(s) 149, 166, 251, 361
SfaNI GCATC 1 cut(s) 103
SfoI GGCGCC 1 cut(s) 56
SinI GGWCC 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 497
SsiI CCGC 4 cut(s) 76, 82, 175, 477
SspDI GGCGCC 1 cut(s) 54
SspMI CTAG 2 cut(s) 276, 519
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 2 cut(s) 166, 361
TaqI TCGA 1 cut(s) 525
TasI AATT 1 cut(s) 497
TauI GCSGC 2 cut(s) 84, 479
TfiI GAWTC 4 cut(s) 203, 224, 233, 439
TscAI CASTG 2 cut(s) 265, 424
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 510
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 2 cut(s) 265, 424
VpaK11BI GGWCC 1 cut(s) 135
XspI CTAG 2 cut(s) 276, 519
ZraI GACGTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.