Prupe.8G021600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015934
Physical Location & Seq
Forward (+)
1953226 .. 1957825
4600 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G021600.1

Sequence Viewer

Length: 576 bp
ATGGTGGCCTCGTCCTCATCGTTGTCCGTGTACTCCTCGGACTCCTCGTCGTCTTCGTCTGCGTCTCGCCGCCGACATCGTCGCCACCAACGTAGTCGCCGAGGCAAAGACAAAGATAAAGACAGAGATGCCCTGAAGATCCGTAAAAAGACCATTCGCTCCCACACTAAACGACGTCGCAGACACCGCCACCACTCCTCGTCTGATTCTCACTCTTCCTCCTCTCCTTCGGGCTATTCCAGTGATAGTTCTTCAGACAGTGAGCGTGAAACATCTAGTCAGTCAAAGAAGCGCAAGAAGAGTGACAGACAGAAGAAGAGCAAGGAAAAGGACCAGAGCAAGAGTCATCGCCGTAAACATCATAGGAGTAAACTCAAAGAGAAGCAGCAGAATGAGAGAAATAGCAGCCCTGTTCAGCTTTCCAAGTTCTTAGGGCGTGACAAAGATGATGGAGTTCGTCGTAGTGCTGTCTCTGGCAAAAAGATTCTATTGAAACTTGAGAAGACAAAGGAGGACAAAGCGGCTGAAAACAAAAGGAATGAACTGCTGAAGTTCTTAAATGCTAGTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.09

Weight (kDa)

11.04

Isoelectric Point (pI)

93.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27860 AT5G27860
fragaria_vesca FvH4_2g14440
malus_domestica MD10G1017700.v1.1
prunus_persica Prupe.8G021600_v2.0.a1
pyrus_communis pycom10g01140
rosa_chinensis RchiOBHm_Chr6g0276771
rosa_laevigata RLG00000013363
rosa_multiflora Rmu_sc0004481.1_g000016
rosa_roxburghii Rroxscaffold_7G00191980
rosa_rugosa Rorug06G0104100
rosa_samantha Rh6AG214200 Rh6BG219000 Rh6CG221700
rosa_wichuraiana Rw6G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 178
AciI CCGC 3 cut(s) 70, 187, 521
AclWI GGATC 1 cut(s) 133
AcuI CTGAAG 3 cut(s) 155, 237, 569
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 493
AhdI GACNNNNNGTC 1 cut(s) 46
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 69, 475
AlwI GGATC 1 cut(s) 133
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 385, 405
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 331
AvaII GGWCC 1 cut(s) 331
BbsI GAAGAC 2 cut(s) 45, 509
BbvI GCAGC 2 cut(s) 397, 417
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 69, 475
BfaI CTAG 2 cut(s) 276, 564
BisI GCNGC 4 cut(s) 70, 386, 406, 522
BlsI GCNGC 4 cut(s) 71, 387, 407, 523
Bme18I GGWCC 1 cut(s) 331
BmeRI GACNNNNNGTC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 45, 509
BpuEI CTTGAG 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 36, 100
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bse1I ACTGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 36, 100
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 4 cut(s) 25, 34, 187, 211
BseXI GCAGC 2 cut(s) 397, 417
BshFI GGCC 1 cut(s) 8
BsmAI GTCTC 2 cut(s) 69, 475
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 3 cut(s) 70, 187, 521
BspANI GGCC 1 cut(s) 8
BspPI GGATC 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 36, 100
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 3 cut(s) 220, 293, 311
BstACI GRCGYC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 430
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 69, 475
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 397, 417
BstV2I GAAGAC 2 cut(s) 45, 509
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 8
BtgZI GCGATG 1 cut(s) 332
BtsIMutI CAGTG 2 cut(s) 247, 265
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 5 cut(s) 8, 234, 408, 418, 524
CviKI_1 RGCY 5 cut(s) 8, 234, 408, 418, 524
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 430
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
DriI GACNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 3 cut(s) 220, 293, 311
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 3 cut(s) 220, 293, 311
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 3 cut(s) 155, 237, 569
Esp3I CGTCTC 1 cut(s) 69
FaiI YATR 1 cut(s) 363
Fnu4HI GCNGC 4 cut(s) 70, 386, 406, 522
Fsp4HI GCNGC 4 cut(s) 70, 386, 406, 522
FspBI CTAG 2 cut(s) 276, 564
GlaI GCGC 1 cut(s) 293
GluI GCNGC 4 cut(s) 70, 386, 406, 522
HaeIII GGCC 1 cut(s) 8
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HinfI GANTC 4 cut(s) 41, 206, 343, 484
Hpy166II GTNNAC 3 cut(s) 31, 356, 371
Hpy188I TCNGA 3 cut(s) 40, 205, 256
Hpy8I GTNNAC 3 cut(s) 31, 356, 371
Hpy99I CGWCG 5 cut(s) 52, 84, 177, 180, 462
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 91, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 2 cut(s) 91, 175
Hsp92I GRCGYC 1 cut(s) 175
HspAI GCGC 1 cut(s) 292
Kzo9I GATC 1 cut(s) 138
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 5 cut(s) 146, 253, 347, 423, 459
Lsp1109I GCAGC 2 cut(s) 397, 417
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 276, 564
MaeII ACGT 2 cut(s) 91, 175
MaeIII GTNAC 2 cut(s) 302, 437
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 8 cut(s) 45, 148, 207, 243, 310, 325, 328, 514
MflI RGATCY 1 cut(s) 138
MlyI GAGTC 2 cut(s) 35, 352
MnlI CCTC 9 cut(s) 19, 25, 46, 55, 95, 208, 229, 232, 505
MseI TTAA 1 cut(s) 557
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 1 cut(s) 138
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 2 cut(s) 302, 437
PciSI GCTCTTC 1 cut(s) 311
PcsI WCGNNNNNNNCGW 5 cut(s) 17, 44, 53, 88, 97
PfeI GAWTC 2 cut(s) 206, 484
PflFI GACNNNGTC 1 cut(s) 78
PkrI GCNGC 4 cut(s) 71, 387, 407, 523
PleI GAGTC 2 cut(s) 35, 351
PpsI GAGTC 2 cut(s) 35, 351
PspPI GGNCC 1 cut(s) 331
PsuI RGATCY 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 78
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 4 cut(s) 70, 386, 406, 522
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 2 cut(s) 35, 352
SetI ASST 3 cut(s) 94, 178, 420
SfaNI GCATC 1 cut(s) 118
SinI GGWCC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SsiI CCGC 3 cut(s) 70, 187, 521
SspMI CTAG 2 cut(s) 276, 564
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 2 cut(s) 94, 178
TatI WGTACW 1 cut(s) 30
TauI GCSGC 2 cut(s) 72, 524
TfiI GAWTC 2 cut(s) 206, 484
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TscAI CASTG 2 cut(s) 247, 265
TseFI GTSAC 2 cut(s) 302, 437
TseI GCWGC 2 cut(s) 385, 405
Tsp45I GTSAC 2 cut(s) 302, 437
TspDTI ATGAA 1 cut(s) 555
TspGWI ACGGA 2 cut(s) 16, 131
TspRI CASTG 2 cut(s) 247, 265
Tth111I GACNNNGTC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 331
XspI CTAG 2 cut(s) 276, 564
ZraI GACGTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.