Rorug06G0104100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015934
Physical Location & Seq
Reverse (-)
13742980 .. 13745366
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0104100.1

Sequence Viewer

Length: 1866 bp
ATGAAATCTCACAAGCTCCTAAACCCTCAGACCCTTAAACCCCAAAAACTCGGATCCATTTTCCTCCCAACCCAATCTCTCTGTTCCCTCACCCAACCCATCACCCACCACTCTCTCCTCAATTCCATCCAAACTTGTCAGTGGCATTTCATCGAACACCTTCCGCCCAACCTTCCCTCCTCTCTAATCTCCCAAACCCTCTTCCATCTCCACCAAACCCCTCACCTTGTCCATCAATTCACATCCCACATCGACTTTCCCCGCCTCGAAATCCAAACCCAATGCCTCGCCGTCGCCATTCTCGCCGCCCTCCCTTCCCCAAAACCCTCCCTGGAGCTCCTGAAGCAACTCCTCGGCAGCGGCATTGCTCCGATTCGAGACGTTTTCGACTCGCTGGCTCGTGCCCGAGTGCGTTTGGGTGCGCAAAGCGGCGTCGTTTTGGACTTGCTGGTAAGTGCTTGCTGTGAATTGAAGAGGGCTGATGAGGCTTTTGAGTGCTTTAGCTTGATGACGAGTGACAATGTTATGCCTAGGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTAGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTAACATCATGATTAATGTGCTGTGTAAAGAAGGCAAGTTAAAGAAGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACAATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCAGATGATTTTTGGTGCTATGAAAGGGAGAGGAGTTCAGCCGGATTCTTACACGTATGGATTGCTTATTAGTGGGATGTGTAAGGAGAGAAGGCTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGAAAATTGGGCTGCTTCCGAGTGCTGTTACTTATAATACCCTGATCGATGGTTATTGCAATAATGGTGATCTGGATAGGGCCTTTGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCCACGGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGTGAAGCTGATTGTATGGTTAGGGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAGGGCTGGGAATGCAAAGAAAGCGTTTATCCTTCGCGATGAAATGTTGAGTAAAGGGATAGAGCCCACTAAGGAAACTTACACATCGCTTATTTACGTTTTGAGTAAGAGGAAGAGAATGAATGATGCAGATGACTTGTTTGAGAAGATACCGCGTAAGGGTGTTCTGCCAGATCTTGTGATGTTTAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCACTTTTGAGGGAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGCTGCAGGGAAGGGAAAGTTGAGGAAGCTCGGGAACTTCTGGATGAGATGAAGAGAAGGGGAATTAAGCCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTGATATGAATGATGCCTTCAAAGTTCGAGACGAGATGTTGAGTAGAGGTTTCAATCCTACACTTCTAACATACAATGCTATTATAAAAGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCATGAGCTCCTTAAAGAAATGGTGAGCAGAGGGATTACTCCCGATGACAGCACATATTACTCTCTGATTGAGGGAATTGAGAATGTTGATGAATTTCTCAGAAAGGGCGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

621

Amino Acids

70.07

Weight (kDa)

8.42

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 151 - 287 9.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 178 - 226 2.7e-10 PPR repeat family
PPR_3 PF13812 201 - 257 4.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 211 - 241 1.1e-08 PPR repeat
PPR_2 PF13041 213 - 260 1.1e-14 PPR repeat family
PPR PF01535 216 - 245 9.7e-06 PPR repeat
PPR_1 PF12854 244 - 276 5.6e-11 PPR repeat
PPR_2 PF13041 247 - 296 7.9e-17 PPR repeat family
PPR PF01535 250 - 280 9.4e-06 PPR repeat
PPR_long PF17177 270 - 362 2.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 271 - 327 7.6e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 278 - 310 2.1e-11 PPR repeat
PPR PF01535 285 - 315 9.9e-07 PPR repeat
PPR_2 PF13041 290 - 323 3.2e-07 PPR repeat family
PPR_3 PF13812 306 - 361 7.4e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 314 - 346 1.5e-12 PPR repeat
PPR_2 PF13041 317 - 364 2e-16 PPR repeat family
PPR PF01535 320 - 350 7.5e-10 PPR repeat
PPR_2 PF13041 352 - 401 8.1e-16 PPR repeat family
PPR_long PF17177 371 - 435 8.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 377 - 436 5.9e-10 Pentatricopeptide repeat domain
TPR_24 PF23276 380 - 442 5.9e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 383 - 415 1.8e-13 PPR repeat
PPR_2 PF13041 387 - 435 4.5e-16 PPR repeat family
PPR PF01535 390 - 420 7.1e-09 PPR repeat
PPR_long PF17177 427 - 544 7.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 446 - 502 5.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 453 - 485 3.1e-11 PPR repeat
PPR_2 PF13041 457 - 505 1.4e-16 PPR repeat family
TPR_24 PF23276 458 - 551 1.3e-08 Fungal tetratrico peptide repeats
PPR PF01535 460 - 489 2e-07 PPR repeat
PPR_1 PF12854 490 - 521 1.1e-12 PPR repeat
PPR_2 PF13041 492 - 538 3.1e-18 PPR repeat family
PPR PF01535 495 - 525 5.3e-09 PPR repeat
PPR_long PF17177 510 - 607 9.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 516 - 573 1.6e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 523 - 555 6.6e-10 PPR repeat
PPR_2 PF13041 527 - 576 3e-17 PPR repeat family
PPR PF01535 530 - 560 9.3e-08 PPR repeat
PPR_1 PF12854 558 - 591 7.8e-08 PPR repeat
PPR_2 PF13041 562 - 608 2.2e-13 PPR repeat family
PPR PF01535 566 - 595 9.1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27860 AT5G27860
fragaria_vesca FvH4_2g14440
malus_domestica MD10G1017700.v1.1
prunus_persica Prupe.8G021600_v2.0.a1
pyrus_communis pycom10g01140
rosa_chinensis RchiOBHm_Chr6g0276771
rosa_laevigata RLG00000013363
rosa_multiflora Rmu_sc0004481.1_g000016
rosa_roxburghii Rroxscaffold_7G00191980
rosa_rugosa Rorug06G0104100
rosa_samantha Rh6AG214200 Rh6BG219000 Rh6CG221700
rosa_wichuraiana Rw6G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 756, 966, 1712
Acc16I TGCGCA 1 cut(s) 423
AccII CGCG 2 cut(s) 1236, 1354
AciI CCGC 6 cut(s) 164, 262, 306, 360, 429, 1352
AclWI GGATC 2 cut(s) 48, 61
AcsI RAATTY 1 cut(s) 1841
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 1 cut(s) 1358
AflIII ACRYGT 2 cut(s) 612, 855
AgsI TTSAA 5 cut(s) 472, 577, 625, 1648, 1681
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 6 cut(s) 16, 337, 504, 1118, 1538, 1756
AluI AGCT 6 cut(s) 16, 337, 504, 1118, 1538, 1756
Alw21I GWGCWC 2 cut(s) 339, 1758
Alw26I GTCTC 2 cut(s) 372, 1650
AlwI GGATC 2 cut(s) 48, 61
Ama87I CYCGRG 2 cut(s) 405, 1539
AoxI GGCC 1 cut(s) 1011
ApeKI GCWGC 3 cut(s) 357, 943, 1512
ApoI RAATTY 1 cut(s) 1841
AseI ATTAAT 2 cut(s) 663, 1188
Asp700I GAANNNNTTC 1 cut(s) 159
AspA2I CCTAGG 1 cut(s) 530
AspLEI GCGC 2 cut(s) 424, 1512
AspS9I GGNCC 1 cut(s) 1011
AsuHPI GGTGA 9 cut(s) 82, 94, 215, 1010, 1048, 1120, 1640, 1751, 1783
AsuII TTCGAA 1 cut(s) 569
AvaI CYCGRG 2 cut(s) 405, 1539
AvrII CCTAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 406
BamHI GGATCC 1 cut(s) 53
BanII GRGCYC 4 cut(s) 339, 805, 1266, 1758
BauI CACGAG 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 339, 1758
BbvI GCAGC 3 cut(s) 369, 930, 1499
BccI CCATC 8 cut(s) 107, 134, 213, 240, 974, 1027, 1394, 1447
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 372, 1650
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 1513
BfoI RGCGCY 1 cut(s) 1513
BglII AGATCT 1 cut(s) 1372
BisI GCNGC 6 cut(s) 306, 358, 361, 430, 944, 1513
BlnI CCTAGG 1 cut(s) 530
BlsI GCNGC 6 cut(s) 307, 359, 362, 431, 945, 1514
Bme1390I CCNGG 1 cut(s) 332
BmeT110I CYCGRG 2 cut(s) 405, 1539
BmgT120I GGNCC 1 cut(s) 1011
BmiI GGNNCC 2 cut(s) 55, 1158
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 3 cut(s) 1153, 1315, 1630
BpmI CTGGAG 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 569
Bsa29I ATCGAT 1 cut(s) 978
BsaAI YACGTR 2 cut(s) 858, 1173
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 4 cut(s) 330, 352, 530, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 1358
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 332
BseCI ATCGAT 1 cut(s) 978
BseDI CCNNGG 4 cut(s) 330, 352, 530, 1056
BseGI GGATG 5 cut(s) 126, 242, 885, 1471, 1558
BseLI CCNNNNNNNGG 1 cut(s) 1358
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 3 cut(s) 41, 818, 1861
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 4 cut(s) 107, 169, 341, 849
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 3 cut(s) 369, 930, 1499
BseYI CCCAGC 1 cut(s) 1205
Bsh1236I CGCG 2 cut(s) 1236, 1354
BshFI GGCC 1 cut(s) 1013
BshVI ATCGAT 1 cut(s) 978
BsiHKAI GWGCWC 2 cut(s) 339, 1758
BsiHKCI CYCGRG 2 cut(s) 405, 1539
BsiSI CCGG 1 cut(s) 845
BslI CCNNNNNNNGG 1 cut(s) 1358
BsmAI GTCTC 2 cut(s) 372, 1650
BsmBI CGTCTC 2 cut(s) 372, 1650
BsmI GAATGC 1 cut(s) 1216
BsnI GGCC 1 cut(s) 1013
BsoBI CYCGRG 2 cut(s) 405, 1539
Bsp119I TTCGAA 1 cut(s) 569
Bsp1286I GDGCHC 5 cut(s) 339, 406, 805, 1266, 1758
Bsp143I GATC 6 cut(s) 53, 627, 975, 1000, 1372, 1741
Bsp68I TCGCGA 1 cut(s) 1236
BspACI CCGC 6 cut(s) 164, 262, 306, 360, 429, 1352
BspANI GGCC 1 cut(s) 1013
BspCNI CTCAG 3 cut(s) 40, 817, 1860
BspDI ATCGAT 1 cut(s) 978
BspFNI CGCG 2 cut(s) 1236, 1354
BspHI TCATGA 4 cut(s) 657, 1084, 1750, 1862
BspLI GGNNCC 2 cut(s) 55, 1158
BspMAI CTGCAG 1 cut(s) 1517
BspPI GGATC 2 cut(s) 48, 61
BspT104I TTCGAA 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 4 cut(s) 330, 352, 530, 1056
BssMI GATC 6 cut(s) 53, 627, 975, 1000, 1372, 1741
BssNI GRCGYC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 530
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 745, 1060
Bst6I CTCTTC 5 cut(s) 206, 467, 1137, 1307, 1556
BstACI GRCGYC 1 cut(s) 432
BstBAI YACGTR 2 cut(s) 858, 1173
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 3 cut(s) 396, 460, 1431
BstDEI CTNAG 5 cut(s) 27, 537, 804, 1269, 1847
BstDSI CCRYGG 1 cut(s) 1056
BstF5I GGATG 5 cut(s) 126, 242, 885, 1471, 1558
BstFNI CGCG 2 cut(s) 1236, 1354
BstH2I RGCGCY 1 cut(s) 1513
BstHHI GCGC 2 cut(s) 424, 1512
BstKTI GATC 6 cut(s) 56, 630, 978, 1003, 1375, 1744
BstMAI GTCTC 2 cut(s) 372, 1650
BstMBI GATC 6 cut(s) 53, 627, 975, 1000, 1372, 1741
BstMWI GCNNNNNNNGC 5 cut(s) 302, 343, 485, 1211, 1220
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 1 cut(s) 1513
BstSLI GKGCMC 1 cut(s) 406
BstSNI TACGTA 1 cut(s) 1173
BstUI CGCG 2 cut(s) 1236, 1354
BstV1I GCAGC 3 cut(s) 369, 930, 1499
BstX2I RGATCY 2 cut(s) 53, 1372
BstYI RGATCY 2 cut(s) 53, 1372
Bsu15I ATCGAT 1 cut(s) 978
BsuRI GGCC 1 cut(s) 1013
BsuTUI ATCGAT 1 cut(s) 978
BtgI CCRYGG 1 cut(s) 1056
BtgZI GCGATG 2 cut(s) 1251, 1269
BtsCI GGATG 5 cut(s) 126, 242, 885, 1471, 1558
BtsIMutI CAGTG 2 cut(s) 146, 643
BtuMI TCGCGA 1 cut(s) 1236
Cac8I GCNNGC 3 cut(s) 396, 460, 1431
CciI TCATGA 4 cut(s) 657, 1084, 1750, 1862
CfoI GCGC 2 cut(s) 424, 1512
Cfr13I GGNCC 1 cut(s) 1011
ClaI ATCGAT 1 cut(s) 978
CseI GACGC 2 cut(s) 421, 897
Csp6I GTAC 1 cut(s) 645
CviAII CATG 6 cut(s) 613, 658, 770, 1085, 1751, 1863
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 5 cut(s) 27, 537, 804, 1269, 1847
DpnI GATC 6 cut(s) 55, 629, 977, 1002, 1374, 1743
DpnII GATC 6 cut(s) 53, 627, 975, 1000, 1372, 1741
Eam1104I CTCTTC 5 cut(s) 206, 467, 1137, 1307, 1556
EarI CTCTTC 5 cut(s) 206, 467, 1137, 1307, 1556
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 2 cut(s) 337, 1756
Eco105I TACGTA 1 cut(s) 1173
Eco130I CCWWGG 1 cut(s) 530
Eco24I GRGCYC 4 cut(s) 339, 805, 1266, 1758
Eco53kI GAGCTC 2 cut(s) 337, 1756
Eco57I CTGAAG 1 cut(s) 362
Eco88I CYCGRG 2 cut(s) 405, 1539
EcoICRI GAGCTC 2 cut(s) 337, 1756
EcoO109I RGGNCCY 1 cut(s) 1011
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 530
EcoT38I GRGCYC 4 cut(s) 339, 805, 1266, 1758
ErhI CCWWGG 1 cut(s) 530
Esp3I CGTCTC 2 cut(s) 372, 1650
FaeI CATG 6 cut(s) 616, 661, 773, 1088, 1754, 1866
FalI AAGNNNNNCTT 2 cut(s) 1728, 1760
FatI CATG 6 cut(s) 612, 657, 769, 1084, 1750, 1862
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 6 cut(s) 306, 358, 361, 430, 944, 1513
FokI GGATG 5 cut(s) 113, 229, 892, 1458, 1565
FriOI GRGCYC 4 cut(s) 339, 805, 1266, 1758
Fsp4HI GCNGC 6 cut(s) 306, 358, 361, 430, 944, 1513
FspBI CTAG 1 cut(s) 531
FspI TGCGCA 1 cut(s) 423
GlaI GCGC 2 cut(s) 423, 1511
GluI GCNGC 6 cut(s) 306, 358, 361, 430, 944, 1513
GsaI CCCAGC 1 cut(s) 1209
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 1513
HaeIII GGCC 1 cut(s) 1013
HapII CCGG 1 cut(s) 845
HgaI GACGC 2 cut(s) 421, 897
HhaI GCGC 2 cut(s) 424, 1512
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 6 cut(s) 616, 661, 773, 1088, 1754, 1866
Hin6I GCGC 2 cut(s) 422, 1510
HinP1I GCGC 2 cut(s) 422, 1510
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HinfI GANTC 6 cut(s) 373, 389, 577, 848, 1081, 1859
HpaII CCGG 1 cut(s) 845
HphI GGTGA 9 cut(s) 82, 94, 215, 1010, 1048, 1120, 1640, 1751, 1783
Hpy166II GTNNAC 3 cut(s) 1065, 1613, 1622
Hpy188I TCNGA 7 cut(s) 30, 53, 372, 807, 951, 1815, 1850
Hpy8I GTNNAC 3 cut(s) 1065, 1613, 1622
Hpy99I CGWCG 2 cut(s) 296, 437
HpyCH4III ACNGT 2 cut(s) 745, 1060
HpyCH4IV ACGT 4 cut(s) 381, 857, 1172, 1296
HpyCH4V TGCA 8 cut(s) 990, 1200, 1214, 1328, 1433, 1504, 1515, 1725
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 343, 485, 1211, 1220
HpyF3I CTNAG 5 cut(s) 27, 537, 804, 1269, 1847
HpySE526I ACGT 4 cut(s) 381, 857, 1172, 1296
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 6 cut(s) 616, 661, 773, 1088, 1754, 1866
HspAI GCGC 2 cut(s) 422, 1510
Kzo9I GATC 6 cut(s) 53, 627, 975, 1000, 1372, 1741
LmnI GCTCC 6 cut(s) 21, 334, 342, 373, 1426, 1761
Lsp1109I GCAGC 3 cut(s) 369, 930, 1499
LweI GCATC 3 cut(s) 1153, 1315, 1630
MaeI CTAG 1 cut(s) 531
MaeII ACGT 4 cut(s) 381, 857, 1172, 1296
MaeIII GTNAC 5 cut(s) 515, 748, 958, 1483, 1592
MalI GATC 6 cut(s) 55, 629, 977, 1002, 1374, 1743
MboI GATC 6 cut(s) 53, 627, 975, 1000, 1372, 1741
MboII GAAGA 8 cut(s) 193, 484, 637, 1051, 1154, 1324, 1357, 1573
MflI RGATCY 2 cut(s) 53, 1372
MhlI GDGCHC 5 cut(s) 339, 406, 805, 1266, 1758
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 775
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 9 cut(s) 36, 651, 663, 689, 735, 1188, 1386, 1575, 1761
MslI CAYNNNNRTG 1 cut(s) 1476
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 1 cut(s) 845
MspR9I CCNGG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 1216
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 2 cut(s) 1236, 1354
MwoI GCNNNNNNNGC 5 cut(s) 302, 343, 485, 1211, 1220
NdeII GATC 6 cut(s) 53, 627, 975, 1000, 1372, 1741
NlaIII CATG 6 cut(s) 616, 661, 773, 1088, 1754, 1866
NlaIV GGNNCC 2 cut(s) 55, 1158
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 2 cut(s) 515, 1483
NruI TCGCGA 1 cut(s) 1236
NsbI TGCGCA 1 cut(s) 423
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 569
PagI TCATGA 4 cut(s) 657, 1084, 1750, 1862
PciI ACATGT 1 cut(s) 612
PctI GAATGC 1 cut(s) 1216
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 5 cut(s) 373, 577, 848, 1081, 1859
PkrI GCNGC 6 cut(s) 307, 359, 362, 431, 945, 1514
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 2 cut(s) 858, 1173
PscI ACATGT 1 cut(s) 612
PshBI ATTAAT 2 cut(s) 663, 1188
PsiI TTATAA 3 cut(s) 756, 966, 1712
Psp124BI GAGCTC 2 cut(s) 339, 1758
Psp6I CCWGG 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 1205
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 55, 1158
PspPI GGNCC 1 cut(s) 1011
PstI CTGCAG 1 cut(s) 1517
PsuI RGATCY 2 cut(s) 53, 1372
RruI TCGCGA 1 cut(s) 1236
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 1476
SacI GAGCTC 2 cut(s) 339, 1758
SaqAI TTAA 9 cut(s) 36, 651, 663, 689, 735, 1188, 1386, 1575, 1761
SatI GCNGC 6 cut(s) 306, 358, 361, 430, 944, 1513
Sau3AI GATC 6 cut(s) 53, 627, 975, 1000, 1372, 1741
Sau96I GGNCC 1 cut(s) 1011
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 5 cut(s) 339, 406, 805, 1266, 1758
SfaNI GCATC 3 cut(s) 1153, 1315, 1630
SfcI CTRYAG 1 cut(s) 1513
SfuI TTCGAA 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 1476
SnaBI TACGTA 1 cut(s) 1173
SsiI CCGC 6 cut(s) 164, 262, 306, 360, 429, 1352
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 2 cut(s) 339, 1758
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 2 cut(s) 745, 1060
TaiI ACGT 4 cut(s) 384, 860, 1175, 1299
TaqI TCGA 9 cut(s) 153, 252, 267, 376, 387, 569, 580, 978, 1654
TatI WGTACW 1 cut(s) 644
TauI GCSGC 3 cut(s) 308, 363, 432
TfiI GAWTC 5 cut(s) 373, 577, 848, 1081, 1859
Tru1I TTAA 9 cut(s) 36, 651, 663, 689, 735, 1188, 1386, 1575, 1761
Tru9I TTAA 9 cut(s) 36, 651, 663, 689, 735, 1188, 1386, 1575, 1761
TscAI CASTG 2 cut(s) 146, 643
TseFI GTSAC 2 cut(s) 515, 1483
TseI GCWGC 3 cut(s) 357, 943, 1512
Tsp45I GTSAC 2 cut(s) 515, 1483
TspRI CASTG 2 cut(s) 146, 643
VspI ATTAAT 2 cut(s) 663, 1188
XapI RAATTY 1 cut(s) 1841
XceI RCATGY 1 cut(s) 616
XmaJI CCTAGG 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.