pycom10g01140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0015934
Physical Location & Seq
Forward (+)
1217606 .. 1220147
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01140.4

Sequence Viewer

Length: 744 bp
ATGAATTTCAACAGTAAACTGGGACACACAAACATACTTAGAGGGGCCACTAAAGTAATTAAACCTTTTTATTTTGACCCCGCACAAAAACGAGTTTCTTCTAGTTGTGGTCCGAACTCCAGTTTCTCAAACCCTCCGTCTCCTCTCTTTCTCTCTCCGCGAGACATGGTGGCATCGTCCTCATCGTTGTCTGAGTACTCCTCGGACTCCTCCTCGTCATCTTCGTCTTCATCTCGCCGTCGACATCGTCGCCACAACCGCAGTCGCCGAGACAAAGACCAGGAGAAAGACAAAGATGCCCTCAAGATCCGAAAAAAGATCAGTCGCTCCAACACCAAACGACGCCGCAGACACCGCCACCGCCACTCCTCGTCGGATTCTTACTCTTCCTCCTCTCCTTCCGATTCCAGAAGTGATAGTTCTTCGGACAGTGAACTAGAAACATCTAGTAAGTCAAAGAAGCGCAAGAAGAGTGACAGACATAAGAAGAGCAAGGAAAAGGACCAGAGCAAGAGTCATCGCCATAAACATCATAGGAAACTCAAGGAGAAACAGAAGAATGAGAGAAGTAGCGGCCCTGTTCAGCTTTCAAAGTTTTTAGGGCGTGACAAAGATGATGGAGTTCGTCGCAGTGCTGTCTCTGGAAAAAAGATTCTACTGAAACTTGAGAAGACAAAGGAGGACAAGGCGGCCGAAGACAAAAGGAATGAATTGCTGAAGTTCTTAAATGCTAGTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

28.29

Weight (kDa)

10.64

Isoelectric Point (pI)

91.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27860 AT5G27860
fragaria_vesca FvH4_2g14440
malus_domestica MD10G1017700.v1.1
prunus_persica Prupe.8G021600_v2.0.a1
pyrus_communis pycom10g01140
rosa_chinensis RchiOBHm_Chr6g0276771
rosa_laevigata RLG00000013363
rosa_multiflora Rmu_sc0004481.1_g000016
rosa_roxburghii Rroxscaffold_7G00191980
rosa_rugosa Rorug06G0104100
rosa_samantha Rh6AG214200 Rh6BG219000 Rh6CG221700
rosa_wichuraiana Rw6G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 241
AccII CGCG 1 cut(s) 160
AciI CCGC 8 cut(s) 81, 158, 259, 346, 355, 361, 573, 689
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 737
AcyI GRCGYC 1 cut(s) 343
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 2 cut(s) 10, 591
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
Alw26I GTCTC 4 cut(s) 144, 156, 264, 643
AlwI GGATC 1 cut(s) 301
AoxI GGCC 3 cut(s) 45, 574, 690
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 4 cut(s) 45, 110, 502, 575
AvaII GGWCC 2 cut(s) 110, 502
BbsI GAAGAC 3 cut(s) 219, 677, 702
BccI CCATC 1 cut(s) 611
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 281
BcoDI GTCTC 4 cut(s) 144, 156, 264, 643
BfaI CTAG 4 cut(s) 102, 437, 447, 732
BisI GCNGC 3 cut(s) 346, 574, 690
BlsI GCNGC 3 cut(s) 347, 575, 691
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 2 cut(s) 110, 502
BmgT120I GGNCC 4 cut(s) 45, 110, 502, 575
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 281
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 182, 286
BmuI ACTGGG 1 cut(s) 29
BpiI GAAGAC 3 cut(s) 219, 677, 702
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 103
BpuEI CTTGAG 3 cut(s) 287, 527, 686
BsaHI GRCGYC 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 4 cut(s) 350, 374, 380, 404
Bse1I ACTGG 2 cut(s) 24, 120
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 24, 120
BseRI GAGGAG 6 cut(s) 132, 190, 199, 202, 358, 382
BseX3I CGGCCG 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 693
BshFI GGCC 3 cut(s) 47, 576, 692
BsiEI CGRYCG 1 cut(s) 693
BslFI GGGAC 1 cut(s) 36
BsmAI GTCTC 4 cut(s) 144, 156, 264, 643
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 3 cut(s) 47, 576, 692
Bsp143I GATC 2 cut(s) 306, 318
BspACI CCGC 8 cut(s) 81, 158, 259, 346, 355, 361, 573, 689
BspANI GGCC 3 cut(s) 47, 576, 692
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 1 cut(s) 301
BspQI GCTCTTC 1 cut(s) 482
BsrI ACTGG 2 cut(s) 24, 120
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 306, 318
BssNI GRCGYC 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 14, 431
Bst6I CTCTTC 3 cut(s) 391, 464, 482
BstACI GRCGYC 1 cut(s) 343
BstDEI CTNAG 2 cut(s) 38, 192
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 309, 321
BstMAI GTCTC 4 cut(s) 144, 156, 264, 643
BstMBI GATC 2 cut(s) 306, 318
BstMCI CGRYCG 1 cut(s) 693
BstMWI GCNNNNNNNGC 2 cut(s) 258, 354
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 279
BstUI CGCG 1 cut(s) 160
BstV2I GAAGAC 3 cut(s) 219, 677, 702
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BstZI CGGCCG 1 cut(s) 690
BsuRI GGCC 3 cut(s) 47, 576, 692
BtgZI GCGATG 1 cut(s) 503
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 2 cut(s) 436, 637
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 4 cut(s) 45, 110, 502, 575
CseI GACGC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 47, 576, 586, 692
CviKI_1 RGCY 4 cut(s) 47, 576, 586, 692
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 38, 192
DpnI GATC 2 cut(s) 308, 320
DpnII GATC 2 cut(s) 306, 318
EaeI YGGCCR 1 cut(s) 690
EagI CGGCCG 1 cut(s) 690
Eam1104I CTCTTC 3 cut(s) 391, 464, 482
EarI CTCTTC 3 cut(s) 391, 464, 482
EclXI CGGCCG 1 cut(s) 690
Eco47I GGWCC 2 cut(s) 110, 502
Eco52I CGGCCG 1 cut(s) 690
Eco57I CTGAAG 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 35, 167, 483, 525, 534
FaqI GGGAC 1 cut(s) 36
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 88
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 346, 574, 690
Fsp4HI GCNGC 3 cut(s) 346, 574, 690
FspBI CTAG 4 cut(s) 102, 437, 447, 732
GlaI GCGC 1 cut(s) 464
GluI GCNGC 3 cut(s) 346, 574, 690
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 3 cut(s) 47, 576, 692
HgaI GACGC 1 cut(s) 351
HhaI GCGC 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 343
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HinfI GANTC 5 cut(s) 206, 377, 404, 514, 652
Hpy166II GTNNAC 3 cut(s) 17, 242, 434
Hpy188I TCNGA 7 cut(s) 114, 193, 205, 311, 376, 403, 427
Hpy188III TCNNGA 3 cut(s) 304, 408, 642
Hpy8I GTNNAC 3 cut(s) 17, 242, 434
Hpy99I CGWCG 5 cut(s) 243, 252, 345, 376, 630
HpyAV CCTTC 1 cut(s) 408
HpyCH4III ACNGT 2 cut(s) 14, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 354
HpyF3I CTNAG 2 cut(s) 38, 192
Hsp92I GRCGYC 1 cut(s) 343
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 463
Kzo9I GATC 2 cut(s) 306, 318
LguI GCTCTTC 1 cut(s) 482
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 8 cut(s) 5, 133, 266, 293, 421, 518, 591, 627
LweI GCATC 2 cut(s) 182, 286
MaeI CTAG 4 cut(s) 102, 437, 447, 732
MaeIII GTNAC 2 cut(s) 473, 605
MalI GATC 2 cut(s) 308, 320
MboI GATC 2 cut(s) 306, 318
MflI RGATCY 1 cut(s) 306
MluCI AATT 3 cut(s) 4, 57, 710
MlyI GAGTC 2 cut(s) 200, 523
MmeI TCCRAC 2 cut(s) 354, 354
MseI TTAA 2 cut(s) 60, 725
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 258, 354
NdeII GATC 2 cut(s) 306, 318
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 2 cut(s) 473, 605
PciSI GCTCTTC 1 cut(s) 482
PcsI WCGNNNNNNNCGW 2 cut(s) 182, 221
PfeI GAWTC 3 cut(s) 377, 404, 652
PflFI GACNNNGTC 1 cut(s) 246
PkrI GCNGC 3 cut(s) 347, 575, 691
PleI GAGTC 2 cut(s) 200, 522
PpsI GAGTC 2 cut(s) 200, 522
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 4 cut(s) 45, 110, 502, 575
PsuI RGATCY 1 cut(s) 306
PsyI GACNNNGTC 1 cut(s) 246
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SalI GTCGAC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 60, 725
SatI GCNGC 3 cut(s) 346, 574, 690
Sau3AI GATC 2 cut(s) 306, 318
Sau96I GGNCC 4 cut(s) 45, 110, 502, 575
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 2 cut(s) 200, 523
ScrFI CCNGG 1 cut(s) 281
SetI ASST 2 cut(s) 67, 588
SfaNI GCATC 2 cut(s) 182, 286
SinI GGWCC 2 cut(s) 110, 502
SmlI CTYRAG 3 cut(s) 302, 542, 665
SmoI CTYRAG 3 cut(s) 302, 542, 665
Sse9I AATT 3 cut(s) 4, 57, 710
SsiI CCGC 8 cut(s) 81, 158, 259, 346, 355, 361, 573, 689
SspMI CTAG 4 cut(s) 102, 437, 447, 732
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 14, 431
TaqI TCGA 1 cut(s) 241
TasI AATT 3 cut(s) 4, 57, 710
TatI WGTACW 1 cut(s) 195
TauI GCSGC 3 cut(s) 348, 576, 692
TfiI GAWTC 3 cut(s) 377, 404, 652
Tru1I TTAA 2 cut(s) 60, 725
Tru9I TTAA 2 cut(s) 60, 725
TscAI CASTG 2 cut(s) 436, 637
TseFI GTSAC 2 cut(s) 473, 605
Tsp45I GTSAC 2 cut(s) 473, 605
TspDTI ATGAA 3 cut(s) 17, 219, 723
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 2 cut(s) 436, 637
Tth111I GACNNNGTC 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 110, 502
XapI RAATTY 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 241
XspI CTAG 4 cut(s) 102, 437, 447, 732
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.