Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015934

Physical Location & Seq

Genomic Coordinates Forward (+)

2239924 .. 2242673

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1017700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTGGCATCGTCCTCATCGTTGTCTGAGTACTCCTCGGACTCCTCCTTGTCATCTTCGTCTGCATCTCGCCGTCGACATCGTCGCCACAACCGCAGTCGCCGAGACAAAGACCAGGAGAAAGACAAAGATGCCCTCAAGATACGAAAAAAGATCAGTCGTTCCAACACCAAACGACGCCGCAGACACCGCCACCGCTACTCCTCGTCGGATTCTTACTCTTCCTCCTCTCCTTCCGATTCCAGAAGTGATAGTTCTTCGGACAGTGAGCTTGAAACATCTAGTAAGTCAAAGAAGCGCAAGAAGAGTGACAGACATAAGAAGAGCAAGGAAAAGGACCAGAGCAAGAGTCATCGCCATAAACATCAAAGGAAACTCAAAGAGAAACAGAAGAATGAGAGAAGTAGCGGCCCTGTTCAGCTTTCAAAGTTATTGGGGCGTGACAAAGATGATGGAGTTCGTCGCAGTGCTGTCTCTGGAAAAAAGATTCTACTGAAACTTGAGAAGACAAAGGAGGACAAGGCGGCTGAAGACAAAAGGAATGAATTGCTGAAGTTCTTAAATGCTAGTTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

22.24

Weight (kDa)

10.6

Isoelectric Point (pI)

92.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27860 AT5G27860
fragaria_vesca	FvH4_2g14440
malus_domestica	MD10G1017700.v1.1
prunus_persica	Prupe.8G021600_v2.0.a1
pyrus_communis	pycom10g01140
rosa_chinensis	RchiOBHm_Chr6g0276771
rosa_laevigata	RLG00000013363
rosa_multiflora	Rmu_sc0004481.1_g000016
rosa_roxburghii	Rroxscaffold_7G00191980
rosa_rugosa	Rorug06G0104100
rosa_samantha	Rh6AG214200 Rh6BG219000 Rh6CG221700
rosa_wichuraiana	Rw6G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	6 cut(s)	94, 181, 190, 196, 408, 524
AcuI	CTGAAG	2 cut(s)	549, 572
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	275, 426
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	271, 421
AluI	AGCT	2 cut(s)	271, 421
Alw26I	GTCTC	2 cut(s)	99, 478
AoxI	GGCC	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	337, 410
AvaII	GGWCC	1 cut(s)	337
BbsI	GAAGAC	2 cut(s)	512, 537
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	99, 478
BfaI	CTAG	2 cut(s)	282, 567
BisI	GCNGC	3 cut(s)	181, 409, 525
BlsI	GCNGC	3 cut(s)	182, 410, 526
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	337, 410
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	17, 74, 121
BpiI	GAAGAC	2 cut(s)	512, 537
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpuEI	CTTGAG	2 cut(s)	122, 521
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 209, 215, 239
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	18
BseRI	GAGGAG	4 cut(s)	25, 34, 193, 217
BshFI	GGCC	1 cut(s)	411
BsmAI	GTCTC	2 cut(s)	99, 478
BsnI	GGCC	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	6 cut(s)	94, 181, 190, 196, 408, 524
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	1 cut(s)	19
BspQI	GCTCTTC	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	3 cut(s)	226, 299, 317
BstACI	GRCGYC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	99, 478
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 189
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstV2I	GAAGAC	2 cut(s)	512, 537
BsuRI	GGCC	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	271, 472
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	337, 410
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	31
CviJI	RGCY	4 cut(s)	271, 411, 421, 527
CviKI_1	RGCY	4 cut(s)	271, 411, 421, 527
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eam1104I	CTCTTC	3 cut(s)	226, 299, 317
EarI	CTCTTC	3 cut(s)	226, 299, 317
Eco47I	GGWCC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	549, 572
EcoRII	CCWGG	1 cut(s)	114
FaiI	YATR	2 cut(s)	318, 360
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	181, 409, 525
Fsp4HI	GCNGC	3 cut(s)	181, 409, 525
FspBI	CTAG	2 cut(s)	282, 567
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	3 cut(s)	181, 409, 525
HaeIII	GGCC	1 cut(s)	411
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HinfI	GANTC	5 cut(s)	41, 212, 239, 349, 487
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	5 cut(s)	28, 40, 211, 238, 262
Hpy188III	TCNNGA	3 cut(s)	139, 243, 477
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	5 cut(s)	78, 87, 180, 211, 465
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 189
HpyF3I	CTNAG	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	178
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	153
LguI	GCTCTTC	1 cut(s)	317
LpnPI	CCDG	6 cut(s)	101, 128, 256, 353, 426, 462
LweI	GCATC	3 cut(s)	17, 74, 121
MaeI	CTAG	2 cut(s)	282, 567
MaeIII	GTNAC	2 cut(s)	308, 440
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	8 cut(s)	48, 213, 249, 316, 334, 403, 517, 542
MluCI	AATT	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	35, 358
MmeI	TCCRAC	2 cut(s)	189, 189
MnlI	CCTC	8 cut(s)	25, 46, 55, 146, 214, 235, 238, 508
MseI	TTAA	1 cut(s)	560
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	93, 189
NdeII	GATC	1 cut(s)	153
NmeAIII	GCCGAG	1 cut(s)	128
NmuCI	GTSAC	2 cut(s)	308, 440
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	212, 239, 487
PflFI	GACNNNGTC	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	182, 410, 526
PleI	GAGTC	2 cut(s)	35, 357
PpsI	GAGTC	2 cut(s)	35, 357
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	337, 410
PsyI	GACNNNGTC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SalI	GTCGAC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	3 cut(s)	181, 409, 525
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	337, 410
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	2 cut(s)	35, 358
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	2 cut(s)	273, 423
SfaNI	GCATC	3 cut(s)	17, 74, 121
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	2 cut(s)	137, 500
SmoI	CTYRAG	2 cut(s)	137, 500
Sse9I	AATT	1 cut(s)	545
SsiI	CCGC	6 cut(s)	94, 181, 190, 196, 408, 524
SspMI	CTAG	2 cut(s)	282, 567
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	545
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	3 cut(s)	183, 411, 527
TfiI	GAWTC	3 cut(s)	212, 239, 487
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	2 cut(s)	271, 472
TseFI	GTSAC	2 cut(s)	308, 440
Tsp45I	GTSAC	2 cut(s)	308, 440
TspDTI	ATGAA	1 cut(s)	558
TspRI	CASTG	2 cut(s)	271, 472
Tth111I	GACNNNGTC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	2 cut(s)	282, 567
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.