FvH4_2g14450

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005509
Physical Location & Seq
Forward (+)
12717683 .. 12720207
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14450.t2

Sequence Viewer

Length: 738 bp
ATGGCGACCAGGCTGCAATTTGAGAACTCATGTGAGGTTGGGGTTTTCTCCAAGCTGACTAATGCTTACTGTTTGGTTGCCATCGGAGGCTCTGAGAGCTTCTACAGCACATTTGAGGCTGAGTTGGCAGATGTTATCCCTGTGGTTAAGACCTCTATTGGTGGCACCCGCATCATTGGTCGCCTCTGTGCTGGGAATAAAAATGGGCTTCTTCTGCCTCACACCACCACAGACCAAGAACTACAACACTTGAGGAACAGCTTGCCTGACCAAGTTGTTGTTCAGCGCATTGAAGAGAGACTATCTGCTCTTGGTAACTGCATTACGTGCAATGATCATGTTGCTCTTACACACCCTGATCTTGATAGGGAAACTGAGGAGATGGTCACAGATGTTCTTGGGGTGGAAGTTTTTCGGAACACTATTGCTACTAATGTTCTTGTTGGCAGCTTTTGTGCCTTGTCCAACAGAGGTGGCTTGGTTCATCCACACACATCTGTTGAAGACTTGGATGAACTTTCAACACTTCTTCAGGTTCCTCTGGTTGCTGGGACAGTCAACCGTGGTAGTGAAGTCATAGCTGCTGGCATGATAGTGAATGATTGGACAGCATTCTGTGGATCTGATACAACTGCCACAGAAGTCTCAGTGATTGAAAGTGTGTTCAAGTTGAGGGAAGCTCAACCTAGTGCCATTGTGGATGAAATGAGGAAATCATTGATTGACAGCTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000460 GO:0000470 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033036 GO:0033750 GO:0033993 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051716 GO:0061458 GO:0065003 GO:0070013 GO:0070727 GO:0070887 GO:0071166 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071426 GO:0071428 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0097305 GO:0097306 GO:1901360 GO:1901700 GO:1901701 GO:1902626 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
eIF-6

Protein Analysis

246

Amino Acids

26.5

Weight (kDa)

4.7

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-6 PF01912 4 - 203 3.9e-81 eIF-6 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 731
AccB1I GGYRCC 1 cut(s) 164
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 515
AgsI TTSAA 5 cut(s) 293, 503, 522, 656, 667
AjnI CCWGG 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 7 cut(s) 55, 99, 261, 450, 581, 680, 729
AluI AGCT 7 cut(s) 55, 99, 261, 450, 581, 680, 729
Alw26I GTCTC 2 cut(s) 292, 649
AlwI GGATC 1 cut(s) 628
ApeKI GCWGC 3 cut(s) 13, 447, 581
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 459, 568
BccI CCATC 2 cut(s) 89, 376
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 10
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 292, 649
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 3 cut(s) 14, 448, 582
BlsI GCNGC 3 cut(s) 15, 449, 583
Bme1390I CCNGG 1 cut(s) 10
BmiI GGNNCC 2 cut(s) 166, 537
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 664, 696
BpuEI CTTGAG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 562
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 3 cut(s) 484, 517, 706
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 4 cut(s) 84, 111, 366, 660
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 459, 568
BseYI CCCAGC 2 cut(s) 191, 548
BshNI GGYRCC 1 cut(s) 164
BslFI GGGAC 1 cut(s) 565
BsmAI GTCTC 2 cut(s) 292, 649
BsmFI GGGAC 1 cut(s) 565
BsmI GAATGC 1 cut(s) 611
Bsp143I GATC 3 cut(s) 334, 358, 620
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 4 cut(s) 85, 112, 367, 659
BspLI GGNNCC 2 cut(s) 166, 537
BspPI GGATC 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 3 cut(s) 334, 358, 620
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 3 cut(s) 71, 556, 563
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 263, 586
BstDEI CTNAG 4 cut(s) 93, 120, 375, 646
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 3 cut(s) 484, 517, 706
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 3 cut(s) 337, 361, 623
BstMAI GTCTC 2 cut(s) 292, 649
BstMBI GATC 3 cut(s) 334, 358, 620
BstMWI GCNNNNNNNGC 5 cut(s) 96, 105, 125, 214, 327
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 459, 568
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 620
BstYI RGATCY 1 cut(s) 620
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 3 cut(s) 484, 517, 706
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 263, 586
CfoI GCGC 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 3 cut(s) 30, 338, 589
DdeI CTNAG 4 cut(s) 93, 120, 375, 646
DpnI GATC 3 cut(s) 336, 360, 622
DpnII GATC 3 cut(s) 334, 358, 620
DrdI GACNNNNNNGTC 1 cut(s) 731
DseDI GACNNNNNNGTC 1 cut(s) 731
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 3 cut(s) 33, 341, 592
FaiI YATR 5 cut(s) 31, 339, 578, 590, 732
FaqI GGGAC 1 cut(s) 565
FatI CATG 3 cut(s) 29, 337, 588
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 14, 448, 582
FokI GGATG 3 cut(s) 471, 524, 713
Fsp4HI GCNGC 3 cut(s) 14, 448, 582
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 14, 448, 582
GsaI CCCAGC 2 cut(s) 195, 552
HhaI GCGC 1 cut(s) 288
Hin1II CATG 3 cut(s) 33, 341, 592
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 5 cut(s) 86, 94, 417, 625, 737
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 1 cut(s) 559
HpyCH4III ACNGT 3 cut(s) 71, 556, 563
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 3 cut(s) 16, 321, 330
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 105, 125, 214, 327
HpyF3I CTNAG 4 cut(s) 93, 120, 375, 646
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 3 cut(s) 33, 341, 592
HspAI GCGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 334, 358, 620
LpnPI CCDG 9 cut(s) 22, 153, 177, 279, 369, 518, 527, 534, 570
Lsp1109I GCAGC 2 cut(s) 459, 568
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 687
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 314, 385
MalI GATC 3 cut(s) 336, 360, 622
MboI GATC 3 cut(s) 334, 358, 620
MboII GAAGA 4 cut(s) 203, 305, 515, 521
MflI RGATCY 1 cut(s) 620
MluCI AATT 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 5 cut(s) 96, 105, 125, 214, 327
NdeII GATC 3 cut(s) 334, 358, 620
NlaIII CATG 3 cut(s) 33, 341, 592
NlaIV GGNNCC 2 cut(s) 166, 537
NmuCI GTSAC 1 cut(s) 385
PctI GAATGC 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 411
PkrI GCNGC 3 cut(s) 15, 449, 583
Ppu21I YACGTR 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 8
PspFI CCCAGC 2 cut(s) 191, 548
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 166, 537
PsuI RGATCY 1 cut(s) 620
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 14, 448, 582
Sau3AI GATC 3 cut(s) 334, 358, 620
ScrFI CCNGG 1 cut(s) 10
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 3 cut(s) 71, 556, 563
TaiI ACGT 1 cut(s) 329
TasI AATT 1 cut(s) 17
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 654
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 3 cut(s) 13, 447, 581
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 3 cut(s) 473, 528, 717
TspRI CASTG 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.