Rh6DG211800

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005509
Physical Location & Seq
Forward (+)
37715459 .. 37717125
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG211800.1

Sequence Viewer

Length: 738 bp
ATGGCGACCAGGCTGCAATTCGAGAACTCATGTGAGATTGGGGTGTTCTCAAAGCTGAGTAATGCGTACTGTTTGGTTGCCATTGGAGGCTCTGAGAGCTTCTACAGTACATTTGAGGCTGAGTTGGCGGATGTTATCCCTGTGGTTAAGACCTCTATTGGCGGCACCCGCATCATTGGTCGCCTCTGTGCCGGGAACAAAAATGGGCTTCTTCTGCCTCACACCACCACAGACCAAGAACTACAACACTTGAGGAACAGCTTGCCTGACCAAGTCGTTGTTCAGCGCATTGAAGAGAAACTATCTGCTCTTGGTAACTGTATCGCATGCAATGATCATGTGGCTCTTACACACCCTGATCTTGTCAGGGAAACTGAGGAGATGGTTGCAGATGTTCTCGGGGTGGAGGTTTTTAGGAACACAATTGCTACTAATGCTCTTGTGGGCAGCTTTTGTGCCTTGTCCAACAGAGGTGGCTTGGTTCATCCACACACATCTGTTGAAGACTTGGATGAACTTTCAACACTTCTTCAGGTCCCTCTGGTTGCTGGGACAGTCAACCGTGGTAGTGAAGTGATAGGAGCTGGCATGACAGTGAATGATTGGACAGCATTCTGTGGGTCTGATACAACTGCGACAGAAGTCTCAGTTATTGAAAGTGTGTTCAAGTTGAGGGAAGCTCAACCTAGTGCCATTGTGGATGAAATGAGGAAATCATTGATTGACAGTTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000460 GO:0000470 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033036 GO:0033750 GO:0033993 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051716 GO:0061458 GO:0065003 GO:0070013 GO:0070727 GO:0070887 GO:0071166 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071426 GO:0071428 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0097305 GO:0097306 GO:1901360 GO:1901700 GO:1901701 GO:1902626 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
eIF-6

Protein Analysis

245

Amino Acids

26.34

Weight (kDa)

4.75

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-6 PF01912 4 - 203 3.2e-80 eIF-6 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 731
AccB1I GGYRCC 1 cut(s) 164
AciI CCGC 3 cut(s) 128, 162, 169
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 2 cut(s) 68, 109
AgsI TTSAA 5 cut(s) 293, 503, 522, 656, 667
AjnI CCWGG 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 6 cut(s) 55, 99, 261, 450, 584, 680
AluI AGCT 6 cut(s) 55, 99, 261, 450, 584, 680
Alw26I GTCTC 1 cut(s) 649
Ama87I CYCGRG 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 13, 447
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 535
AsuC2I CCSGG 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 535
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 459
BccI CCATC 1 cut(s) 376
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 10
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 3 cut(s) 14, 163, 448
BlsI GCNGC 3 cut(s) 15, 164, 449
Bme1390I CCNGG 2 cut(s) 10, 193
Bme18I GGWCC 1 cut(s) 535
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 2 cut(s) 166, 537
BmrFI CCNGG 2 cut(s) 10, 193
BmsI GCATC 1 cut(s) 180
BoxI GACNNNNGTC 1 cut(s) 641
BpiI GAAGAC 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 664, 696
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 562
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 4 cut(s) 136, 484, 517, 706
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 5 cut(s) 47, 84, 111, 366, 660
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 459
BseYI CCCAGC 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 521, 565
BsmAI GTCTC 1 cut(s) 649
BsmFI GGGAC 2 cut(s) 521, 565
BsmI GAATGC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 398
Bsp143I GATC 2 cut(s) 334, 358
BspACI CCGC 3 cut(s) 128, 162, 169
BspCNI CTCAG 5 cut(s) 48, 85, 112, 367, 659
BspLI GGNNCC 2 cut(s) 166, 537
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 2 cut(s) 334, 358
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 7 cut(s) 71, 107, 320, 556, 563, 595, 728
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 263, 328, 586
BstDEI CTNAG 5 cut(s) 56, 93, 120, 375, 646
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 4 cut(s) 136, 484, 517, 706
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 2 cut(s) 337, 361
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 2 cut(s) 334, 358
BstMWI GCNNNNNNNGC 5 cut(s) 96, 125, 168, 214, 434
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 330
BstPAI GACNNNNGTC 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 8, 191
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 510
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 4 cut(s) 136, 484, 517, 706
BtsIMutI CAGTG 1 cut(s) 600
Cac8I GCNNGC 3 cut(s) 263, 328, 586
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 535
Csp6I GTAC 2 cut(s) 67, 108
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 4 cut(s) 30, 327, 338, 589
CviQI GTAC 2 cut(s) 67, 108
DdeI CTNAG 5 cut(s) 56, 93, 120, 375, 646
DpnI GATC 2 cut(s) 336, 360
DpnII GATC 2 cut(s) 334, 358
DrdI GACNNNNNNGTC 1 cut(s) 731
DseDI GACNNNNNNGTC 1 cut(s) 731
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 4 cut(s) 33, 330, 341, 592
FaiI YATR 5 cut(s) 31, 328, 339, 590, 732
FaqI GGGAC 2 cut(s) 521, 565
FatI CATG 4 cut(s) 29, 326, 337, 588
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 14, 163, 448
FokI GGATG 4 cut(s) 143, 471, 524, 713
Fsp4HI GCNGC 3 cut(s) 14, 163, 448
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 14, 163, 448
GsaI CCCAGC 1 cut(s) 552
HapII CCGG 1 cut(s) 192
HhaI GCGC 1 cut(s) 288
Hin1II CATG 4 cut(s) 33, 330, 341, 592
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 3 cut(s) 94, 625, 737
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 559
HpyCH4III ACNGT 7 cut(s) 71, 107, 320, 556, 563, 595, 728
HpyCH4V TGCA 3 cut(s) 16, 330, 389
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 125, 168, 214, 434
HpyF3I CTNAG 5 cut(s) 56, 93, 120, 375, 646
Hsp92II CATG 4 cut(s) 33, 330, 341, 592
HspAI GCGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 334, 358
LmnI GCTCC 1 cut(s) 581
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 687
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 336, 360
MboI GATC 2 cut(s) 334, 358
MboII GAAGA 4 cut(s) 203, 305, 515, 521
MfeI CAATTG 1 cut(s) 423
MluCI AATT 2 cut(s) 17, 423
MmeI TCCRAC 1 cut(s) 489
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 593
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 10, 193
MunI CAATTG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 5 cut(s) 96, 125, 168, 214, 434
NciI CCSGG 1 cut(s) 193
NdeII GATC 2 cut(s) 334, 358
NlaIII CATG 4 cut(s) 33, 330, 341, 592
NlaIV GGNNCC 2 cut(s) 166, 537
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PctI GAATGC 1 cut(s) 611
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 3 cut(s) 15, 164, 449
PpuMI RGGWCCY 1 cut(s) 535
PshAI GACNNNNGTC 1 cut(s) 641
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 166, 537
PspPI GGNCC 1 cut(s) 535
PspPPI RGGWCCY 1 cut(s) 535
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 2 cut(s) 68, 109
RsaNI GTAC 2 cut(s) 67, 108
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 14, 163, 448
Sau3AI GATC 2 cut(s) 334, 358
Sau96I GGNCC 1 cut(s) 535
ScrFI CCNGG 2 cut(s) 10, 193
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SphI GCATGC 1 cut(s) 330
Sse9I AATT 2 cut(s) 17, 423
SsiI CCGC 3 cut(s) 128, 162, 169
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 2 cut(s) 8, 191
TaaI ACNGT 7 cut(s) 71, 107, 320, 556, 563, 595, 728
TaqI TCGA 1 cut(s) 21
TasI AATT 2 cut(s) 17, 423
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 600
TseI GCWGC 2 cut(s) 13, 447
TspDTI ATGAA 3 cut(s) 473, 528, 717
TspRI CASTG 1 cut(s) 600
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 535
XceI RCATGY 1 cut(s) 330
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.