Rmu_co8448283.1_g000001

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8448283.1
OG0005509
Physical Location & Seq
Forward (+)
1 .. 1610
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8448283.1_g000001.1.cds

Sequence Viewer

Length: 728 bp
ggctgcaattcgagaactcatgtgagattggggtgttctcaaagctgagtaatgcgtactgtttggttgccattggaggctctgagagcttctacagtacatttgaggctgagttggcggatgttatccctgtggttaagacctctattggcggcactcgcatcattggtcgcctctgtgccgggaacaaaaatgggcttcttctgcctcacaccaccacagaccaagaactacaacacttgaggaacagcttgcctgaccaagtcgttgttcagcgcattgaagagaaactatctgctcttggtaactgtatcgcgtgcaatgatcatgtggctcttgcacaccctgatcttgacagggaaaccgaggagatggttgcagatgttctcggggtggaggtttttaggaacacaattgctactaatgttcttgtgggcagcttttgtgccttgtccaacagaggtggcttggttcatccacacacatctgttgaagacttggatgaactttcaacacttcttcaggtccctctggttgctgggacagtcaaccgtggtagtgaagtgatagcagctggcatgacagtgaatgattggacagcattctgtgggtctgatacaactgcgacagaagtctcagttattgaaagtgtgttcaagttgagggaagctcaacctagtgccattgtggatgaaatgaggaaatcattgatcgacagctatgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000460 GO:0000470 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033036 GO:0033750 GO:0033993 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051716 GO:0061458 GO:0065003 GO:0070013 GO:0070727 GO:0070887 GO:0071166 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071426 GO:0071428 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0097305 GO:0097306 GO:1901360 GO:1901700 GO:1901701 GO:1902626 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
eIF-6

Protein Analysis

241

Amino Acids

25.91

Weight (kDa)

4.64

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 721
AccII CGCG 1 cut(s) 316
AciI CCGC 2 cut(s) 118, 152
AcuI CTGAAG 1 cut(s) 505
AfaI GTAC 2 cut(s) 58, 99
AgsI TTSAA 5 cut(s) 283, 493, 512, 646, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 7 cut(s) 45, 89, 251, 440, 574, 670, 719
AluI AGCT 7 cut(s) 45, 89, 251, 440, 574, 670, 719
Alw26I GTCTC 1 cut(s) 639
Ama87I CYCGRG 1 cut(s) 388
ApeKI GCWGC 3 cut(s) 3, 437, 571
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 525
AsuC2I CCSGG 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 2 cut(s) 449, 583
BccI CCATC 1 cut(s) 366
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 639
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 4 cut(s) 4, 153, 438, 572
BlsI GCNGC 4 cut(s) 5, 154, 439, 573
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 525
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 1 cut(s) 527
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 170
BoxI GACNNNNGTC 1 cut(s) 631
BpiI GAAGAC 1 cut(s) 500
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 365, 552
Bse3DI GCAATG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 365, 552
BseGI GGATG 4 cut(s) 126, 474, 507, 696
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 4 cut(s) 37, 74, 101, 650
BseRI GAGGAG 1 cut(s) 382
BseXI GCAGC 2 cut(s) 449, 583
BseYI CCCAGC 1 cut(s) 538
Bsh1236I CGCG 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 2 cut(s) 511, 555
BsmAI GTCTC 1 cut(s) 639
BsmFI GGGAC 2 cut(s) 511, 555
BsmI GAATGC 1 cut(s) 601
BsoBI CYCGRG 1 cut(s) 388
Bsp143I GATC 3 cut(s) 324, 348, 710
BspACI CCGC 2 cut(s) 118, 152
BspCNI CTCAG 4 cut(s) 38, 75, 102, 649
BspFNI CGCG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 365, 552
BssMI GATC 3 cut(s) 324, 348, 710
Bst4CI ACNGT 6 cut(s) 61, 97, 310, 546, 553, 585
Bst6I CTCTTC 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 253, 318, 576
BstDEI CTNAG 4 cut(s) 46, 83, 110, 636
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 4 cut(s) 126, 474, 507, 696
BstFNI CGCG 1 cut(s) 316
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 3 cut(s) 327, 351, 713
BstMAI GTCTC 1 cut(s) 639
BstMBI GATC 3 cut(s) 324, 348, 710
BstMWI GCNNNNNNNGC 4 cut(s) 86, 115, 158, 204
BstPAI GACNNNNGTC 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 93
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 449, 583
BstV2I GAAGAC 1 cut(s) 500
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 4 cut(s) 126, 474, 507, 696
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 3 cut(s) 253, 318, 576
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 525
Csp6I GTAC 2 cut(s) 57, 98
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviAII CATG 3 cut(s) 20, 328, 579
CviQI GTAC 2 cut(s) 57, 98
DdeI CTNAG 4 cut(s) 46, 83, 110, 636
DpnI GATC 3 cut(s) 326, 350, 712
DpnII GATC 3 cut(s) 324, 348, 710
DrdI GACNNNNNNGTC 1 cut(s) 721
DseDI GACNNNNNNGTC 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 525
FaeI CATG 3 cut(s) 23, 331, 582
FaiI YATR 4 cut(s) 21, 329, 580, 722
FaqI GGGAC 2 cut(s) 511, 555
FatI CATG 3 cut(s) 19, 327, 578
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 4 cut(s) 4, 153, 438, 572
FokI GGATG 4 cut(s) 133, 461, 514, 703
Fsp4HI GCNGC 4 cut(s) 4, 153, 438, 572
FspBI CTAG 1 cut(s) 677
GlaI GCGC 1 cut(s) 277
GluI GCNGC 4 cut(s) 4, 153, 438, 572
GsaI CCCAGC 1 cut(s) 542
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 278
Hin1II CATG 3 cut(s) 23, 331, 582
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HpaII CCGG 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 3 cut(s) 84, 615, 727
Hpy188III TCNNGA 2 cut(s) 12, 352
Hpy8I GTNNAC 1 cut(s) 549
HpyCH4III ACNGT 6 cut(s) 61, 97, 310, 546, 553, 585
HpyCH4V TGCA 4 cut(s) 6, 320, 340, 379
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 115, 158, 204
HpyF3I CTNAG 4 cut(s) 46, 83, 110, 636
Hsp92II CATG 3 cut(s) 23, 331, 582
HspAI GCGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 3 cut(s) 324, 348, 710
LpnPI CCDG 9 cut(s) 143, 195, 269, 342, 359, 508, 517, 524, 560
Lsp1109I GCAGC 2 cut(s) 449, 583
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 677
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 326, 350, 712
MboI GATC 3 cut(s) 324, 348, 710
MboII GAAGA 4 cut(s) 193, 295, 505, 511
MfeI CAATTG 1 cut(s) 413
MluCI AATT 2 cut(s) 7, 413
MmeI TCCRAC 1 cut(s) 479
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 583
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 601
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 4 cut(s) 86, 115, 158, 204
NciI CCSGG 1 cut(s) 183
NdeII GATC 3 cut(s) 324, 348, 710
NlaIII CATG 3 cut(s) 23, 331, 582
NlaIV GGNNCC 1 cut(s) 527
PctI GAATGC 1 cut(s) 601
PflFI GACNNNGTC 1 cut(s) 262
PkrI GCNGC 4 cut(s) 5, 154, 439, 573
PpuMI RGGWCCY 1 cut(s) 525
PshAI GACNNNNGTC 1 cut(s) 631
Psp5II RGGWCCY 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 538
PspN4I GGNNCC 1 cut(s) 527
PspPI GGNCC 1 cut(s) 525
PspPPI RGGWCCY 1 cut(s) 525
PsyI GACNNNGTC 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 574
RsaI GTAC 2 cut(s) 58, 99
RsaNI GTAC 2 cut(s) 57, 98
RseI CAYNNNNRTG 1 cut(s) 583
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 4 cut(s) 4, 153, 438, 572
Sau3AI GATC 3 cut(s) 324, 348, 710
Sau96I GGNCC 1 cut(s) 525
ScrFI CCNGG 1 cut(s) 183
SfaNI GCATC 1 cut(s) 170
SfcI CTRYAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 2 cut(s) 7, 413
SsiI CCGC 2 cut(s) 118, 152
SspMI CTAG 1 cut(s) 677
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 6 cut(s) 61, 97, 310, 546, 553, 585
TaqI TCGA 2 cut(s) 11, 713
TasI AATT 2 cut(s) 7, 413
TatI WGTACW 1 cut(s) 97
TauI GCSGC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 1 cut(s) 590
TseI GCWGC 3 cut(s) 3, 437, 571
TspDTI ATGAA 3 cut(s) 463, 518, 707
TspRI CASTG 1 cut(s) 590
Tth111I GACNNNGTC 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 525
XspI CTAG 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.