Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004481.1

Orthogroup ID

OG0005509

Physical Location & Seq

Genomic Coordinates Reverse (-)

64188 .. 66329

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004481.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggcgaccaggctgcaattcgagaactcatgtgagattggggtgttctcaaagctgagtaatgcgtactgtttggttgccattggaggctctgagagcttctacagtacatttgaggctgagttggcggatgttatccctgtggttaagacctctattggcggcactcgcatcattggtcgcctctgtgccgggaacaaaaatgggcttcttctgcctcacaccaccacagaccaagaactacaacacttgaggaacagcttgcctgaccaagtcgttgttcagcgcattgaagagaaactatctgctcttggtaactgtatcgcgtgcaatgatcatgtggctcttgcacaccctgatcttgacagggaaaccgaggagatggttgcagatgttctcggggtggaggtttttaggaacacaattgctactaatgttcttgtgggcagcttttgtgccttgtccaacagaggtggcttggttcatccacacacatctgttgaagacttggatgaactttcaacacttcttcaggtccctctggttgctgggacagtcaaccgtggtagtgaagtgatagcagctggcatgacagtgaatgattggacagcattctgtgggtctgatacaactgcgacagaagtctcagttattgaaagtgtgttcaagttgagggaagctcaacctagtgccattgtggatgaaatgaggaaatcattgatcgacagctatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000054 GO:0000460 GO:0000470 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033036 GO:0033750 GO:0033993 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051716 GO:0061458 GO:0065003 GO:0070013 GO:0070727 GO:0070887 GO:0071166 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071426 GO:0071428 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0097305 GO:0097306 GO:1901360 GO:1901700 GO:1901701 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

eIF-6

Protein Analysis

245

Amino Acids

26.37

Weight (kDa)

4.7

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55620
fragaria_vesca	FvH4_2g14450 FvH4_2g14450 FvH4_4g33621
malus_domestica	MD05G1017600.v1.1 MD10G1017600.v1.1
prunus_persica	Prupe.8G021500_v2.0.a1 Prupe.8G021500_v2.0.a1
pyrus_communis	pycom05g00990 pycom10g01130
rosa_chinensis	RchiOBHm_Chr4g0443081 RchiOBHm_Chr6g0276781
rosa_laevigata	RLG00000005955 RLG00000013362
rosa_multiflora	Rmu_co8448283.1_g000001 Rmu_sc0000190.1_g000033 Rmu_sc0004481.1_g000015
rosa_roxburghii	Rroxscaffold_7G00191970
rosa_rugosa	Rorug04G0344200 Rorug06G0104300 Rorug06G0104400
rosa_samantha	Rh4AG398600 Rh4BG410100 Rh4CG425600 Rh4DG405000 Rh6CG221800 Rh6DG211800
rosa_wichuraiana	Rw4G034350 Rw6G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	731
AccII	CGCG	1 cut(s)	326
AciI	CCGC	2 cut(s)	128, 162
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	68, 109
AgsI	TTSAA	5 cut(s)	293, 503, 522, 656, 667
AjnI	CCWGG	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	7 cut(s)	55, 99, 261, 450, 584, 680, 729
AluI	AGCT	7 cut(s)	55, 99, 261, 450, 584, 680, 729
Alw26I	GTCTC	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	398
ApeKI	GCWGC	3 cut(s)	13, 447, 581
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	535
AsuC2I	CCSGG	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	459, 593
BccI	CCATC	1 cut(s)	376
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	10
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	4 cut(s)	14, 163, 448, 582
BlsI	GCNGC	4 cut(s)	15, 164, 449, 583
Bme1390I	CCNGG	2 cut(s)	10, 193
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	2 cut(s)	10, 193
BmsI	GCATC	1 cut(s)	180
BoxI	GACNNNNGTC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	510
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	375, 562
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	375, 562
BseGI	GGATG	4 cut(s)	136, 484, 517, 706
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	4 cut(s)	47, 84, 111, 660
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	459, 593
BseYI	CCCAGC	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	521, 565
BsmAI	GTCTC	1 cut(s)	649
BsmFI	GGGAC	2 cut(s)	521, 565
BsmI	GAATGC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	334, 358, 720
BspACI	CCGC	2 cut(s)	128, 162
BspCNI	CTCAG	4 cut(s)	48, 85, 112, 659
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	375, 562
BssMI	GATC	3 cut(s)	334, 358, 720
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	6 cut(s)	71, 107, 320, 556, 563, 595
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	263, 328, 586
BstDEI	CTNAG	4 cut(s)	56, 93, 120, 646
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	4 cut(s)	136, 484, 517, 706
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	337, 361, 723
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	3 cut(s)	334, 358, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 125, 168, 214
BstNI	CCWGG	1 cut(s)	10
BstPAI	GACNNNNGTC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	8, 191
BstSFI	CTRYAG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	459, 593
BstV2I	GAAGAC	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	4 cut(s)	136, 484, 517, 706
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	3 cut(s)	263, 328, 586
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	67, 108
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	3 cut(s)	30, 338, 589
CviQI	GTAC	2 cut(s)	67, 108
DdeI	CTNAG	4 cut(s)	56, 93, 120, 646
DpnI	GATC	3 cut(s)	336, 360, 722
DpnII	GATC	3 cut(s)	334, 358, 720
DrdI	GACNNNNNNGTC	1 cut(s)	731
DseDI	GACNNNNNNGTC	1 cut(s)	731
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	33, 341, 592
FaiI	YATR	4 cut(s)	31, 339, 590, 732
FaqI	GGGAC	2 cut(s)	521, 565
FatI	CATG	3 cut(s)	29, 337, 588
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	4 cut(s)	14, 163, 448, 582
FokI	GGATG	4 cut(s)	143, 471, 524, 713
Fsp4HI	GCNGC	4 cut(s)	14, 163, 448, 582
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	4 cut(s)	14, 163, 448, 582
GsaI	CCCAGC	1 cut(s)	552
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	33, 341, 592
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	3 cut(s)	94, 625, 737
Hpy188III	TCNNGA	2 cut(s)	22, 362
Hpy8I	GTNNAC	1 cut(s)	559
HpyCH4III	ACNGT	6 cut(s)	71, 107, 320, 556, 563, 595
HpyCH4V	TGCA	4 cut(s)	16, 330, 350, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 125, 168, 214
HpyF3I	CTNAG	4 cut(s)	56, 93, 120, 646
Hsp92II	CATG	3 cut(s)	33, 341, 592
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	334, 358, 720
Lsp1109I	GCAGC	2 cut(s)	459, 593
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	3 cut(s)	336, 360, 722
MboI	GATC	3 cut(s)	334, 358, 720
MboII	GAAGA	4 cut(s)	203, 305, 515, 521
MfeI	CAATTG	1 cut(s)	423
MluCI	AATT	2 cut(s)	17, 423
MmeI	TCCRAC	1 cut(s)	489
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	593
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	10, 193
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	96, 125, 168, 214
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	3 cut(s)	334, 358, 720
NlaIII	CATG	3 cut(s)	33, 341, 592
NlaIV	GGNNCC	1 cut(s)	537
PctI	GAATGC	1 cut(s)	611
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	15, 164, 449, 583
PpuMI	RGGWCCY	1 cut(s)	535
PshAI	GACNNNNGTC	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	535
PspPPI	RGGWCCY	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	2 cut(s)	68, 109
RsaNI	GTAC	2 cut(s)	67, 108
RseI	CAYNNNNRTG	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	14, 163, 448, 582
Sau3AI	GATC	3 cut(s)	334, 358, 720
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	10, 193
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	17, 423
SsiI	CCGC	2 cut(s)	128, 162
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	8, 191
TaaI	ACNGT	6 cut(s)	71, 107, 320, 556, 563, 595
TaqI	TCGA	2 cut(s)	21, 723
TasI	AATT	2 cut(s)	17, 423
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	600
TseI	GCWGC	3 cut(s)	13, 447, 581
TspDTI	ATGAA	3 cut(s)	473, 528, 717
TspRI	CASTG	1 cut(s)	600
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	535
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.