Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

12826273 .. 12830266

Gene Structure 3994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAAGAAGATGAAAGTGGGCACCGAAGATGCAGTGATCAAAGTCATCCGGGGAAACCCTGAGAGGATGGCACCTTTAGTGGGCTATTTCCCATCCGGGTTTGATCCAGACCCGAATTCAACCAATGTTGGGGTCTTTAGGCACAAACAAAGAGGTGGTACTAGGCTTCAGCTTGTGGTAACCCCGGAAAACGAGGCCAAGGTTGATTTCGTCGCAACTAGCTATGCTGGTGAGGCTCAGGCTGGGGAGTATTGCTCTTATGGACTTGGTATTTTTGATAAGGCCACCCGCACATTGAAGATTGTGCCTATTGCTAATAACAAAGTATTTAGGTTAGAACCAAAAGTTCAAGGCATTGACTCCTCTAATGAGAATGAGAAGCCTGCAAGTTCAGTGATCGGAGAACTTTCTGAACATGAGAAGGCAGAAAAGCGTATACAACTTCATAATCTTTATGGAACAAAGAAGTCCATACGGAAGAACAAAAAAATGCAAATGTTGAAGCGCGAAAATGATCCTGATGCTCATAATGATTTGGATGTAATCAAACAATGTATGACGACCACGGAGGATTTGTTAGAAGCTTCTGAAGGCCATATGGTTCGCAATACCCCTCCATTTAATGCTTCTGCCACCACTCCCCAGGAGGCTTATCCACTGGACAAGATCATCTCGACAGGAGAGTGGAAATTCCTCCAAGATATCCATAAGCCTTTAAAAGGGGAATCTGAACTTCCCCAGTTTGTTAGAAACCGAATCCATAAACTGCAGCAGATTGAGGATGAAGACAAGAAGAACAAGCTTACTTGTATTTTCTCGTATATTATGCATCTTATAAAGTTCAACGATCTGCATTCCAAGGAGCGCCAGGGGATTTCCTCTGAGAAGGCCTCCTCTGCAAAGGCTCACAGATTCCCAGGCATCATAAGGGACAAATTTGCAAGCATGTTTGATGCAGAGTCAGGAAGTCTATCAACCGAAAAACGTAATCTTCTCATTAGTTATGTTCTGGTTCTCACTCTATTTGCGGATGAATTTCAAATAAGTTTGACAGACATAGCAACTGATCTGAGAATGAAAAGTCCAGATTTGAGGAAGCATTATGAGGCCTTGGGCTGCAAGGTGTCTAAGAAGAATAACTTATTAACTGTTACCCTTCCTGTCCCCCTCCAATTTCCATCACTGAAGCGGAAGCGAAGCAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

403

Amino Acids

45.44

Weight (kDa)

9.3

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_I_A49	PF06870	19 - 230	1.7e-37	A49-like RNA polymerase I associated factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
AccB1I	GGYRCC	2 cut(s)	20, 70
AccI	GTMKAC	1 cut(s)	436
AccII	CGCG	1 cut(s)	507
AciI	CCGC	3 cut(s)	289, 1028, 1189
AclWI	GGATC	2 cut(s)	98, 509
AcsI	RAATTY	4 cut(s)	115, 689, 935, 1034
AcuI	CTGAAG	3 cut(s)	152, 609, 1205
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	3 cut(s)	80, 129, 719
AgsI	TTSAA	6 cut(s)	120, 298, 350, 502, 844, 1040
AjnI	CCWGG	3 cut(s)	642, 867, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	4 cut(s)	172, 222, 584, 802
AluI	AGCT	4 cut(s)	172, 222, 584, 802
AlwI	GGATC	2 cut(s)	98, 509
AoxI	GGCC	5 cut(s)	195, 282, 592, 888, 1107
ApeKI	GCWGC	2 cut(s)	769, 1116
ApoI	RAATTY	4 cut(s)	115, 689, 935, 1034
AspLEI	GCGC	2 cut(s)	507, 867
AsuC2I	CCSGG	3 cut(s)	50, 97, 185
AsuHPI	GGTGA	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	23
BanI	GGYRCC	2 cut(s)	20, 70
BbsI	GAAGAC	1 cut(s)	792
BbvI	GCAGC	2 cut(s)	781, 1103
BccI	CCATC	3 cut(s)	61, 100, 1186
BciT130I	CCWGG	3 cut(s)	644, 869, 918
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	3 cut(s)	50, 97, 185
BfaI	CTAG	2 cut(s)	162, 219
BfmI	CTRYAG	1 cut(s)	767
BfoI	RGCGCY	1 cut(s)	868
BisI	GCNGC	2 cut(s)	770, 1117
BlsI	GCNGC	2 cut(s)	771, 1118
Bme1390I	CCNGG	6 cut(s)	50, 97, 185, 644, 869, 918
BmiI	GGNNCC	2 cut(s)	22, 72
BmrFI	CCNGG	6 cut(s)	50, 97, 185, 644, 869, 918
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	5 cut(s)	19, 511, 838, 930, 943
BmuI	ACTGGG	1 cut(s)	733
BpiI	GAAGAC	1 cut(s)	792
BplI	GAGNNNNNCTC	4 cut(s)	239, 271, 875, 907
Bpu10I	CCTNAGC	1 cut(s)	237
BpuMI	CCSGG	3 cut(s)	50, 97, 185
BsaJI	CCNNGG	9 cut(s)	49, 183, 198, 564, 642, 858, 868, 916, 1110
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 129, 719
Bse1I	ACTGG	2 cut(s)	663, 739
BseBI	CCWGG	3 cut(s)	644, 869, 918
BseDI	CCNNGG	9 cut(s)	49, 183, 198, 564, 642, 858, 868, 916, 1110
BseGI	GGATG	6 cut(s)	45, 72, 92, 544, 787, 1036
BseLI	CCNNNNNNNGG	3 cut(s)	80, 129, 719
BseMII	CTCAG	4 cut(s)	51, 251, 873, 1061
BseNI	ACTGG	2 cut(s)	663, 739
BseRI	GAGGAG	2 cut(s)	352, 883
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	781, 1103
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	5 cut(s)	197, 284, 594, 890, 1109
BshNI	GGYRCC	2 cut(s)	20, 70
BsiSI	CCGG	3 cut(s)	49, 96, 185
BslFI	GGGAC	2 cut(s)	944, 1148
BslI	CCNNNNNNNGG	3 cut(s)	80, 129, 719
BsmFI	GGGAC	2 cut(s)	944, 1148
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	5 cut(s)	197, 284, 594, 890, 1109
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	7 cut(s)	36, 103, 396, 514, 666, 847, 1066
BspACI	CCGC	3 cut(s)	289, 1028, 1189
BspANI	GGCC	5 cut(s)	197, 284, 594, 890, 1109
BspCNI	CTCAG	4 cut(s)	52, 250, 874, 1062
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	22, 72
BspMAI	CTGCAG	1 cut(s)	771
BspPI	GGATC	2 cut(s)	98, 509
BspT107I	GGYRCC	2 cut(s)	20, 70
BsrI	ACTGG	2 cut(s)	663, 739
BssECI	CCNNGG	9 cut(s)	49, 183, 198, 564, 642, 858, 868, 916, 1110
BssMI	GATC	7 cut(s)	36, 103, 396, 514, 666, 847, 1066
BssNAI	GTATAC	1 cut(s)	437
BssT1I	CCWWGG	3 cut(s)	198, 858, 1110
Bst1107I	GTATAC	1 cut(s)	437
Bst2UI	CCWGG	3 cut(s)	644, 869, 918
Bst4CI	ACNGT	1 cut(s)	1150
BstC8I	GCNNGC	2 cut(s)	384, 943
BstDEI	CTNAG	5 cut(s)	60, 237, 882, 1070, 1128
BstDSI	CCRYGG	1 cut(s)	564
BstEII	GGTNACC	1 cut(s)	178
BstENI	CCTNNNNNAGG	1 cut(s)	717
BstF5I	GGATG	6 cut(s)	45, 72, 92, 544, 787, 1036
BstFNI	CGCG	1 cut(s)	507
BstH2I	RGCGCY	1 cut(s)	868
BstHHI	GCGC	2 cut(s)	507, 867
BstKTI	GATC	7 cut(s)	39, 106, 399, 517, 669, 850, 1069
BstMBI	GATC	7 cut(s)	36, 103, 396, 514, 666, 847, 1066
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 896
BstNI	CCWGG	3 cut(s)	644, 869, 918
BstNSI	RCATGY	1 cut(s)	949
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	6 cut(s)	48, 95, 183, 642, 867, 916
BstSFI	CTRYAG	1 cut(s)	767
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	781, 1103
BstV2I	GAAGAC	1 cut(s)	792
BstZ17I	GTATAC	1 cut(s)	437
BsuRI	GGCC	5 cut(s)	197, 284, 594, 890, 1109
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	6 cut(s)	45, 72, 92, 544, 787, 1036
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	4 cut(s)	39, 399, 656, 1181
Cac8I	GCNNGC	2 cut(s)	384, 943
CfoI	GCGC	2 cut(s)	507, 867
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	416, 946
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	5 cut(s)	60, 237, 882, 1070, 1128
DpnI	GATC	7 cut(s)	38, 105, 398, 516, 668, 849, 1068
DpnII	GATC	7 cut(s)	36, 103, 396, 514, 666, 847, 1066
DraI	TTTAAA	1 cut(s)	717
Eco130I	CCWWGG	3 cut(s)	198, 858, 1110
Eco147I	AGGCCT	2 cut(s)	890, 1109
Eco32I	GATATC	1 cut(s)	703
Eco57I	CTGAAG	3 cut(s)	152, 609, 1205
Eco91I	GGTNACC	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	717
EcoO65I	GGTNACC	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	3 cut(s)	642, 867, 916
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	3 cut(s)	198, 858, 1110
EcoT22I	ATGCAT	1 cut(s)	831
ErhI	CCWWGG	3 cut(s)	198, 858, 1110
FaeI	CATG	2 cut(s)	419, 949
FalI	AAGNNNNNCTT	2 cut(s)	1124, 1156
FaqI	GGGAC	2 cut(s)	944, 1148
FatI	CATG	2 cut(s)	415, 945
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	597
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	770, 1117
FokI	GGATG	6 cut(s)	32, 79, 79, 551, 794, 1043
Fsp4HI	GCNGC	2 cut(s)	770, 1117
FspBI	CTAG	2 cut(s)	162, 219
GlaI	GCGC	2 cut(s)	506, 866
GluI	GCNGC	2 cut(s)	770, 1117
GsaI	CCCAGC	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	868
HaeIII	GGCC	5 cut(s)	197, 284, 594, 890, 1109
HapII	CCGG	3 cut(s)	49, 96, 185
HhaI	GCGC	2 cut(s)	507, 867
Hin1II	CATG	2 cut(s)	419, 949
Hin6I	GCGC	2 cut(s)	505, 865
HinP1I	GCGC	2 cut(s)	505, 865
HindIII	AAGCTT	2 cut(s)	582, 800
HinfI	GANTC	5 cut(s)	359, 725, 756, 912, 959
HpaII	CCGG	3 cut(s)	49, 96, 185
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	6 cut(s)	401, 412, 589, 730, 883, 1071
Hpy188III	TCNNGA	5 cut(s)	107, 518, 673, 963, 1085
Hpy8I	GTNNAC	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	415, 584, 880, 1166
HpyCH4III	ACNGT	1 cut(s)	1150
HpyCH4IV	ACGT	1 cut(s)	985
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 896
HpyF3I	CTNAG	5 cut(s)	60, 237, 882, 1070, 1128
HpySE526I	ACGT	1 cut(s)	985
Hsp92II	CATG	2 cut(s)	419, 949
HspAI	GCGC	2 cut(s)	505, 865
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	7 cut(s)	36, 103, 396, 514, 666, 847, 1066
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	2 cut(s)	781, 1103
LweI	GCATC	5 cut(s)	19, 511, 838, 930, 943
MaeI	CTAG	2 cut(s)	162, 219
MaeII	ACGT	1 cut(s)	985
MaeIII	GTNAC	2 cut(s)	178, 1150
MalI	GATC	7 cut(s)	38, 105, 398, 516, 668, 849, 1068
MboI	GATC	7 cut(s)	36, 103, 396, 514, 666, 847, 1066
MboII	GAAGA	9 cut(s)	16, 19, 38, 310, 490, 797, 805, 983, 1144
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	5 cut(s)	115, 689, 935, 1034, 1172
MlyI	GAGTC	2 cut(s)	353, 968
Mph1103I	ATGCAT	1 cut(s)	831
MseI	TTAA	3 cut(s)	621, 716, 1145
MspI	CCGG	3 cut(s)	49, 96, 185
MspR9I	CCNGG	6 cut(s)	50, 97, 185, 644, 869, 918
Mva1269I	GAATGC	1 cut(s)	853
MvaI	CCWGG	3 cut(s)	644, 869, 918
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	233, 896
NciI	CCSGG	3 cut(s)	50, 97, 185
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	7 cut(s)	36, 103, 396, 514, 666, 847, 1066
NlaIII	CATG	2 cut(s)	419, 949
NlaIV	GGNNCC	2 cut(s)	22, 72
NsiI	ATGCAT	1 cut(s)	831
NspI	RCATGY	1 cut(s)	949
PceI	AGGCCT	2 cut(s)	890, 1109
PctI	GAATGC	1 cut(s)	853
PfeI	GAWTC	3 cut(s)	725, 756, 912
PkrI	GCNGC	2 cut(s)	771, 1118
PleI	GAGTC	2 cut(s)	353, 967
PpsI	GAGTC	2 cut(s)	353, 967
PsiI	TTATAA	1 cut(s)	836
Psp6I	CCWGG	3 cut(s)	642, 867, 916
PspEI	GGTNACC	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	3 cut(s)	642, 867, 916
PspN4I	GGNNCC	2 cut(s)	22, 72
PstI	CTGCAG	1 cut(s)	771
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	621, 716, 1145
SatI	GCNGC	2 cut(s)	770, 1117
Sau3AI	GATC	7 cut(s)	36, 103, 396, 514, 666, 847, 1066
SchI	GAGTC	2 cut(s)	353, 968
ScrFI	CCNGG	6 cut(s)	50, 97, 185, 644, 869, 918
SduI	GDGCHC	1 cut(s)	23
SfaNI	GCATC	5 cut(s)	19, 511, 838, 930, 943
SfcI	CTRYAG	1 cut(s)	767
Sse9I	AATT	5 cut(s)	115, 689, 935, 1034, 1172
SseBI	AGGCCT	2 cut(s)	890, 1109
SsiI	CCGC	3 cut(s)	289, 1028, 1189
SspMI	CTAG	2 cut(s)	162, 219
StuI	AGGCCT	2 cut(s)	890, 1109
StyD4I	CCNGG	6 cut(s)	48, 95, 183, 642, 867, 916
StyI	CCWWGG	3 cut(s)	198, 858, 1110
TaaI	ACNGT	1 cut(s)	1150
TaiI	ACGT	1 cut(s)	988
TaqI	TCGA	1 cut(s)	674
TasI	AATT	5 cut(s)	115, 689, 935, 1034, 1172
TfiI	GAWTC	3 cut(s)	725, 756, 912
Tru1I	TTAA	3 cut(s)	621, 716, 1145
Tru9I	TTAA	3 cut(s)	621, 716, 1145
TscAI	CASTG	4 cut(s)	39, 399, 663, 1188
TseI	GCWGC	2 cut(s)	769, 1116
TspDTI	ATGAA	6 cut(s)	17, 26, 434, 798, 1047, 1091
TspGWI	ACGGA	2 cut(s)	490, 581
TspRI	CASTG	4 cut(s)	39, 399, 663, 1188
XagI	CCTNNNNNAGG	1 cut(s)	717
XapI	RAATTY	4 cut(s)	115, 689, 935, 1034
XceI	RCATGY	1 cut(s)	949
XmiI	GTMKAC	1 cut(s)	436
XspI	CTAG	2 cut(s)	162, 219
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.