Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

81062393 .. 81065100

Gene Structure 2708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAAGTCGCACCAGAAGACACGCGAAGCAACCCACAGAAGCCCCAAACAGTCATCAAAGTCATTCCAGGAAACCCAGAGAGAATGGCACCTTTGGTGGGCTATTTCCCATCTGGGTTTGATCCCACCAAAAGCTCAGATCTAAACTCAACCAAAGTTGGGGTCTTCAGGCACAAAGAGAGAAGTGGTACTCGGCTTCAGCTTGTGGTAACCCCAGAAAAGGATGCTGAAGTTGATTTCGTTGGAACTAGCTATGCTGGTGAGGCTCAGGCTGGGGAGCACTGCGCTTATGGACTTGGTATTCTTGATAAGGCCACCCACACATTGAAGATTGTGCCTATTGCTAATAACAAGGTATTTAGATTAGAACCAAAAGTTCAAGGTGCTGACTCCTCTAATAAGGAGCTTGCAAGTTCAGTGATTGGAAAACTTTCTGCACATGAGAAGACAGAAAAACTTACAGAACTTCATAATCGTTATGGAACAAAGAAGTCAATACGGCAGAACAAAAGAATGCAAACCTTGAAGCACGGAGATGATCCTGTTGCTCAAAATGATTTGAATGCAATCAAAAATGGTATGACGAACAGGGAGGATCTTGAAGAAGTTTCCGATTGCCATAATGATCGCAATACCCCACCATTTAATGCTTCTGCCACCACTCCCCAGGAGGCTTATCCACTGGACAAGATCATCTCCACAGCAGAGTGGAAATTCCTCCAAGATATTCATAAGCTTGTGGAAGGGGGATCAGAACTTCCCCGGTTTGTTAGCAACCGAATCCATAAACTGCAGCAGATTGTGGATGAAGAGAAGAAGAACAAGCTTGCTTGTATTTTCTCATATATTATGCACCTTATAAAGTTCAAAGATCTGCATTCCATGGAGCTCAAGGGGCTTTTCTTTCCAAAGGCCCACAGATTCCCAAGCATTATAAGGGACAAATTTTCAAGAATGTTTGATGCAGTGTCGAGAAAGCTATCAACCGAAAAAAGTAATCTTCTCATTAGTTATGTCCTGGTGCTCACTCTATTTGTGGATGAATTCCAAACAAGTTTGACAGACATAGCAAAGGATCTGAGAATGAGTACCTTAAAGTTGAGGACGCATTATGAGACCTTGGGTTGCAAGGTGTCTAAGAAGAACAACTTTATAACGGTTACCCTTCCTGTCCCCCTCCAATTTCCAACACTGAAGCGCAAGCGAAGCAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

405

Amino Acids

45.79

Weight (kDa)

9.51

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_I_A49	PF06870	50 - 396	8e-52	A49-like RNA polymerase I associated factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	860, 935, 1154
AccB1I	GGYRCC	1 cut(s)	88
AccII	CGCG	1 cut(s)	25
AclWI	GGATC	5 cut(s)	116, 533, 603, 757, 1083
AcsI	RAATTY	3 cut(s)	713, 944, 1043
AcuI	CTGAAG	4 cut(s)	151, 182, 249, 1214
AfaI	GTAC	2 cut(s)	190, 1090
AfiI	CCNNNNNNNGG	3 cut(s)	98, 159, 220
AgsI	TTSAA	7 cut(s)	328, 380, 526, 562, 602, 868, 951
AjnI	CCWGG	3 cut(s)	67, 666, 1017
AluBI	AGCT	8 cut(s)	135, 202, 252, 406, 736, 826, 889, 979
AluI	AGCT	8 cut(s)	135, 202, 252, 406, 736, 826, 889, 979
Alw21I	GWGCWC	3 cut(s)	282, 891, 1026
Alw26I	GTCTC	1 cut(s)	1109
AlwI	GGATC	5 cut(s)	116, 533, 603, 757, 1083
AoxI	GGCC	2 cut(s)	312, 912
ApeKI	GCWGC	1 cut(s)	793
ApoI	RAATTY	3 cut(s)	713, 944, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	1 cut(s)	430
AspLEI	GCGC	2 cut(s)	287, 1200
AspS9I	GGNCC	1 cut(s)	913
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	891
BbsI	GAAGAC	3 cut(s)	24, 157, 452
Bbv12I	GWGCWC	3 cut(s)	282, 891, 1026
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	3 cut(s)	69, 668, 1019
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	1109
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	791
BglII	AGATCT	2 cut(s)	139, 871
BisI	GCNGC	1 cut(s)	794
BlsI	GCNGC	1 cut(s)	795
Bme1390I	CCNGG	4 cut(s)	69, 668, 763, 1019
BmgT120I	GGNCC	1 cut(s)	913
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	4 cut(s)	69, 668, 763, 1019
BmsI	GCATC	2 cut(s)	214, 952
BpiI	GAAGAC	3 cut(s)	24, 157, 452
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	875
BpuMI	CCSGG	1 cut(s)	763
BsaI	GGTCTC	1 cut(s)	1109
BsaJI	CCNNGG	4 cut(s)	666, 761, 882, 1119
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 159, 220
Bse1I	ACTGG	1 cut(s)	687
BseBI	CCWGG	3 cut(s)	69, 668, 1019
BseDI	CCNNGG	4 cut(s)	666, 761, 882, 1119
BseGI	GGATG	3 cut(s)	229, 811, 1045
BseLI	CCNNNNNNNGG	3 cut(s)	98, 159, 220
BseMII	CTCAG	3 cut(s)	150, 281, 1070
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	805
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	314, 914
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	3 cut(s)	282, 891, 1026
BsiSI	CCGG	1 cut(s)	763
BslFI	GGGAC	2 cut(s)	953, 1157
BslI	CCNNNNNNNGG	3 cut(s)	98, 159, 220
BsmAI	GTCTC	1 cut(s)	1109
BsmFI	GGGAC	2 cut(s)	953, 1157
BsmI	GAATGC	3 cut(s)	519, 568, 877
BsnI	GGCC	2 cut(s)	314, 914
Bso31I	GGTCTC	1 cut(s)	1109
Bsp1286I	GDGCHC	3 cut(s)	282, 891, 1026
Bsp143I	GATC	9 cut(s)	121, 139, 538, 595, 625, 690, 749, 871, 1075
Bsp19I	CCATGG	1 cut(s)	882
BspANI	GGCC	2 cut(s)	314, 914
BspCNI	CTCAG	3 cut(s)	149, 280, 1071
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	795
BspPI	GGATC	5 cut(s)	116, 533, 603, 757, 1083
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	1109
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	4 cut(s)	666, 761, 882, 1119
BssMI	GATC	9 cut(s)	121, 139, 538, 595, 625, 690, 749, 871, 1075
BssT1I	CCWWGG	2 cut(s)	882, 1119
Bst2UI	CCWGG	3 cut(s)	69, 668, 1019
Bst4CI	ACNGT	2 cut(s)	52, 1159
Bst6I	CTCTTC	1 cut(s)	804
BstC8I	GCNNGC	3 cut(s)	408, 828, 1202
BstDEI	CTNAG	4 cut(s)	136, 267, 1079, 1137
BstDSI	CCRYGG	1 cut(s)	882
BstEII	GGTNACC	2 cut(s)	208, 1159
BstF5I	GGATG	3 cut(s)	229, 811, 1045
BstFNI	CGCG	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	287, 1200
BstKTI	GATC	9 cut(s)	124, 142, 541, 598, 628, 693, 752, 874, 1078
BstMAI	GTCTC	1 cut(s)	1109
BstMBI	GATC	9 cut(s)	121, 139, 538, 595, 625, 690, 749, 871, 1075
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 895, 1206
BstNI	CCWGG	3 cut(s)	69, 668, 1019
BstPI	GGTNACC	2 cut(s)	208, 1159
BstSCI	CCNGG	4 cut(s)	67, 666, 761, 1017
BstSFI	CTRYAG	1 cut(s)	791
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	805
BstV2I	GAAGAC	3 cut(s)	24, 157, 452
BstX2I	RGATCY	4 cut(s)	139, 595, 871, 1075
BstYI	RGATCY	4 cut(s)	139, 595, 871, 1075
BsuRI	GGCC	2 cut(s)	314, 914
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	3 cut(s)	229, 811, 1045
BtsI	GCAGTG	2 cut(s)	280, 972
BtsIMutI	CAGTG	5 cut(s)	280, 423, 680, 972, 1190
Cac8I	GCNNGC	3 cut(s)	408, 828, 1202
CfoI	GCGC	2 cut(s)	287, 1200
Cfr13I	GGNCC	1 cut(s)	913
CseI	GACGC	1 cut(s)	1114
Csp6I	GTAC	2 cut(s)	189, 1089
CviAII	CATG	2 cut(s)	440, 883
CviQI	GTAC	2 cut(s)	189, 1089
DdeI	CTNAG	4 cut(s)	136, 267, 1079, 1137
DpnI	GATC	9 cut(s)	123, 141, 540, 597, 627, 692, 751, 873, 1077
DpnII	GATC	9 cut(s)	121, 139, 538, 595, 625, 690, 749, 871, 1075
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Ecl136II	GAGCTC	1 cut(s)	889
Eco130I	CCWWGG	2 cut(s)	882, 1119
Eco24I	GRGCYC	1 cut(s)	891
Eco31I	GGTCTC	1 cut(s)	1109
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	4 cut(s)	151, 182, 249, 1214
Eco91I	GGTNACC	2 cut(s)	208, 1159
EcoICRI	GAGCTC	1 cut(s)	889
EcoO65I	GGTNACC	2 cut(s)	208, 1159
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	3 cut(s)	67, 666, 1017
EcoT14I	CCWWGG	2 cut(s)	882, 1119
EcoT38I	GRGCYC	1 cut(s)	891
ErhI	CCWWGG	2 cut(s)	882, 1119
FaeI	CATG	2 cut(s)	443, 886
FalI	AAGNNNNNCTT	2 cut(s)	1133, 1165
FaqI	GGGAC	2 cut(s)	953, 1157
FatI	CATG	2 cut(s)	439, 882
Fnu4HI	GCNGC	1 cut(s)	794
FokI	GGATG	3 cut(s)	236, 818, 1052
FriOI	GRGCYC	1 cut(s)	891
Fsp4HI	GCNGC	1 cut(s)	794
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	2 cut(s)	286, 1199
GluI	GCNGC	1 cut(s)	794
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	314, 914
HapII	CCGG	1 cut(s)	763
HgaI	GACGC	1 cut(s)	1114
HhaI	GCGC	2 cut(s)	287, 1200
Hin1II	CATG	2 cut(s)	443, 886
Hin6I	GCGC	2 cut(s)	285, 1198
HinP1I	GCGC	2 cut(s)	285, 1198
HindIII	AAGCTT	2 cut(s)	734, 824
HinfI	GANTC	3 cut(s)	389, 780, 921
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	4 cut(s)	139, 613, 754, 1080
Hpy188III	TCNNGA	4 cut(s)	305, 599, 951, 972
HpyAV	CCTTC	2 cut(s)	737, 1175
HpyCH4III	ACNGT	2 cut(s)	52, 1159
HpyCH4V	TGCA	9 cut(s)	410, 437, 517, 566, 793, 853, 877, 965, 1128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 895, 1206
HpyF3I	CTNAG	4 cut(s)	136, 267, 1079, 1137
Hsp92II	CATG	2 cut(s)	443, 886
HspAI	GCGC	2 cut(s)	285, 1198
Kzo9I	GATC	9 cut(s)	121, 139, 538, 595, 625, 690, 749, 871, 1075
LmnI	GCTCC	3 cut(s)	277, 403, 886
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	2 cut(s)	214, 952
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	208, 1159
MalI	GATC	9 cut(s)	123, 141, 540, 597, 627, 692, 751, 873, 1077
MboI	GATC	9 cut(s)	121, 139, 538, 595, 625, 690, 749, 871, 1075
MflI	RGATCY	4 cut(s)	139, 595, 871, 1075
MhlI	GDGCHC	3 cut(s)	282, 891, 1026
MluCI	AATT	4 cut(s)	713, 944, 1043, 1181
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	223, 1211
MnlI	CCTC	7 cut(s)	256, 403, 586, 664, 728, 1095, 1187
MroXI	GAANNNNTTC	1 cut(s)	430
MseI	TTAA	2 cut(s)	645, 1094
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	4 cut(s)	69, 668, 763, 1019
Mva1269I	GAATGC	3 cut(s)	519, 568, 877
MvaI	CCWGG	3 cut(s)	69, 668, 1019
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	263, 895, 1206
NciI	CCSGG	1 cut(s)	763
NcoI	CCATGG	1 cut(s)	882
NdeII	GATC	9 cut(s)	121, 139, 538, 595, 625, 690, 749, 871, 1075
NlaIII	CATG	2 cut(s)	443, 886
NlaIV	GGNNCC	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	172
PctI	GAATGC	3 cut(s)	519, 568, 877
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	780, 921
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	795
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PsiI	TTATAA	3 cut(s)	860, 935, 1154
Psp124BI	GAGCTC	1 cut(s)	891
Psp6I	CCWGG	3 cut(s)	67, 666, 1017
PspEI	GGTNACC	2 cut(s)	208, 1159
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	3 cut(s)	67, 666, 1017
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	913
PstI	CTGCAG	1 cut(s)	795
PsuI	RGATCY	4 cut(s)	139, 595, 871, 1075
RsaI	GTAC	2 cut(s)	190, 1090
RsaNI	GTAC	2 cut(s)	189, 1089
RseI	CAYNNNNRTG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	891
SaqAI	TTAA	2 cut(s)	645, 1094
SatI	GCNGC	1 cut(s)	794
Sau3AI	GATC	9 cut(s)	121, 139, 538, 595, 625, 690, 749, 871, 1075
Sau96I	GGNCC	1 cut(s)	913
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	4 cut(s)	69, 668, 763, 1019
SduI	GDGCHC	3 cut(s)	282, 891, 1026
SfaNI	GCATC	2 cut(s)	214, 952
SfcI	CTRYAG	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
Sse9I	AATT	4 cut(s)	713, 944, 1043, 1181
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	4 cut(s)	67, 666, 761, 1017
StyI	CCWWGG	2 cut(s)	882, 1119
TaaI	ACNGT	2 cut(s)	52, 1159
TaqI	TCGA	1 cut(s)	971
TasI	AATT	4 cut(s)	713, 944, 1043, 1181
TfiI	GAWTC	2 cut(s)	780, 921
Tru1I	TTAA	2 cut(s)	645, 1094
Tru9I	TTAA	2 cut(s)	645, 1094
TscAI	CASTG	5 cut(s)	287, 423, 687, 972, 1197
TseI	GCWGC	1 cut(s)	793
TspDTI	ATGAA	5 cut(s)	17, 458, 719, 822, 1056
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	5 cut(s)	287, 423, 687, 972, 1197
XapI	RAATTY	3 cut(s)	713, 944, 1043
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.