Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

65374572 .. 65378160

Gene Structure 3589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0522400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGATCAAACAAATTCTGGGTAGAATACCTCGAAAACCCTCGAAATCATCGCAAAACGATGCATATAACGATGGAGGGGTTAATGGGATTGGACCCAATTCCATTAACAGCTCAAAATCTACTTCTGCTGCTGCATCAAAGTCTTCGAATTCGGGTTCCGGGGCTTCAAGAACCAGCAATGGGATTCTTGCCCCACAGTCAAGTAAATCCAAGAAATCCGGTCAAGTAGGTCCTTTGTTGCATTCAGGAGCCTATGAGGCCCTGCCGAGTTTTAGGGATGTTCCCAGTGCAGAGAAGCAGGGTCTTTTCATCAAGAAATTGAATATGTGTTGTGTTGTATTTGATTTCAACGATCCGTCGAAGAATGTCAGGGAGAAGGACATAAAGAGGCAGACTTTGCTTGAACTTGTGGATTACATTTCATCTGTGAGTTCGAAATTCAATGAGGTGACAATGCAGGAGATTACTAAGATGGTGTCTACCAATTTGTTTCGGACTTTTCCATCTTCGAATCATGAGAAGAAGGCTCTTGAGAGTTATGACCAAGATGAGGAGGACCAGATGTTGGAGCCTGCTTGGTCTCATCTTCAGGTTGTGTATGAGTTTCTGTTAAGATTTGTGGCTTCCCCGGAGACAGATGCTAAGCTAGCTAAAAGATATATTGACCAAGCGTTTGTTTTGAAATTGCTTGATTTGTTTGACTCTGAGGATCAAAGAGAGAGGGAATACTTAAAAACGATTCTCCACCGGGTTTATGGGAAGTTCATGGTACATCGACCATTCATTAGGAAAGCCATCAACAATATCTTCTTTTGGTTCATATTTGAGACTCAGAAGCACAATGGGATTGCAGAAATGCTTGAAATTCTAGGCAGTATAATCAATGGTTTTGCTTTGCCTTTGAAGGAAGAGCACAAGCTGTTCCTTGTCCGCGCCTTGATTCCCCTTCACAAGCCTAAATGTGTATCTATGTACCATCAGCAACTTTCCTATTGCATTACTCAGTTCGTGGAGAAAGATGCCAAGCTATCTGATACCGTGATTAGAGGACTGTTGAAGTATTGGCCCATAACCAATAGTTCAAAGGAAGTTATGTTCCTTGGTGAATTGGAAGAAGTTCTGGAAGCTACCCAGCCATCAGAATTTCAGCGGTGCATGGTCCCTCTTTTCCGTCGAATTGGTCAGTGCCTCAGCAGCTCACATTTTCAGTTGTTGGAATCAAAAATTGAGTTCCTGGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

414

Amino Acids

47.04

Weight (kDa)

8.68

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B56	PF01603	88 - 412	5.7e-149	Protein phosphatase 2A regulatory B subunit (B56 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	479
AccII	CGCG	1 cut(s)	933
AciI	CCGC	2 cut(s)	931, 1150
AclWI	GGATC	2 cut(s)	347, 717
AcsI	RAATTY	5 cut(s)	12, 148, 437, 864, 1142
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	2 cut(s)	771, 974
AfiI	CCNNNNNNNGG	3 cut(s)	180, 550, 565
AjnI	CCWGG	1 cut(s)	1233
AloI	GAACNNNNNNTCC	2 cut(s)	1079, 1111
AluBI	AGCT	7 cut(s)	111, 646, 650, 919, 1027, 1127, 1197
AluI	AGCT	7 cut(s)	111, 646, 650, 919, 1027, 1127, 1197
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	3 cut(s)	585, 626, 821
AlwI	GGATC	2 cut(s)	347, 717
AoxI	GGCC	2 cut(s)	258, 1064
ApeKI	GCWGC	3 cut(s)	128, 131, 1194
ApoI	RAATTY	5 cut(s)	12, 148, 437, 864, 1142
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
Asp700I	GAANNNNTTC	1 cut(s)	1116
AspLEI	GCGC	1 cut(s)	935
AspS9I	GGNCC	6 cut(s)	92, 230, 259, 556, 1065, 1159
AsuC2I	CCSGG	3 cut(s)	160, 629, 749
AsuHPI	GGTGA	2 cut(s)	460, 1115
AsuII	TTCGAA	3 cut(s)	146, 434, 509
AsuNHI	GCTAGC	1 cut(s)	646
AvaII	GGWCC	4 cut(s)	92, 230, 556, 1159
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	915
BbvCI	CCTCAGC	1 cut(s)	1190
BbvI	GCAGC	3 cut(s)	115, 118, 1206
BccI	CCATC	7 cut(s)	65, 466, 511, 803, 984, 1144, 1232
BciT130I	CCWGG	1 cut(s)	1235
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	3 cut(s)	160, 629, 749
BcoDI	GTCTC	3 cut(s)	585, 626, 821
BfaI	CTAG	2 cut(s)	647, 869
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	3 cut(s)	129, 132, 1195
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	3 cut(s)	130, 133, 1196
Bme1390I	CCNGG	4 cut(s)	160, 629, 749, 1235
Bme18I	GGWCC	4 cut(s)	92, 230, 556, 1159
BmgT120I	GGNCC	6 cut(s)	92, 230, 259, 556, 1065, 1159
BmiI	GGNNCC	5 cut(s)	94, 157, 250, 570, 1161
BmrFI	CCNGG	4 cut(s)	160, 629, 749, 1235
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	4 cut(s)	49, 143, 628, 1009
BmtI	GCTAGC	1 cut(s)	650
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	1190
Bpu1102I	GCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	3 cut(s)	146, 434, 509
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	3 cut(s)	160, 629, 749
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	3 cut(s)	159, 627, 1099
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 550, 565
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	1235
BseDI	CCNNGG	3 cut(s)	159, 627, 1099
BseGI	GGATG	2 cut(s)	283, 1243
BseLI	CCNNNNNNNGG	3 cut(s)	180, 550, 565
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	4 cut(s)	696, 845, 1016, 1204
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	3 cut(s)	115, 118, 1206
BseYI	CCCAGC	1 cut(s)	1131
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	933
BshFI	GGCC	2 cut(s)	260, 1066
BsiHKAI	GWGCWC	1 cut(s)	915
BsiSI	CCGG	4 cut(s)	159, 219, 629, 748
BslFI	GGGAC	1 cut(s)	1145
BslI	CCNNNNNNNGG	3 cut(s)	180, 550, 565
BsmAI	GTCTC	3 cut(s)	585, 626, 821
BsmFI	GGGAC	1 cut(s)	1145
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	260, 1066
Bso31I	GGTCTC	1 cut(s)	585
Bsp119I	TTCGAA	3 cut(s)	146, 434, 509
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp143I	GATC	3 cut(s)	3, 352, 709
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	2 cut(s)	931, 1150
BspANI	GGCC	2 cut(s)	260, 1066
BspCNI	CTCAG	4 cut(s)	697, 844, 1015, 1203
BspFNI	CGCG	1 cut(s)	933
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	5 cut(s)	94, 157, 250, 570, 1161
BspOI	GCTAGC	1 cut(s)	650
BspPI	GGATC	2 cut(s)	347, 717
BspQI	GCTCTTC	1 cut(s)	903
BspT104I	TTCGAA	3 cut(s)	146, 434, 509
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	159, 627, 1099
BssMI	GATC	3 cut(s)	3, 352, 709
BssT1I	CCWWGG	1 cut(s)	1099
Bst2UI	CCWGG	1 cut(s)	1235
Bst4CI	ACNGT	3 cut(s)	198, 1039, 1053
Bst6I	CTCTTC	1 cut(s)	903
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstBI	TTCGAA	3 cut(s)	146, 434, 509
BstC8I	GCNNGC	2 cut(s)	573, 648
BstDEI	CTNAG	6 cut(s)	468, 642, 705, 831, 1002, 1190
BstF5I	GGATG	2 cut(s)	283, 1243
BstFNI	CGCG	1 cut(s)	933
BstHHI	GCGC	1 cut(s)	935
BstKTI	GATC	3 cut(s)	6, 355, 712
BstMAI	GTCTC	3 cut(s)	585, 626, 821
BstMBI	GATC	3 cut(s)	3, 352, 709
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 397, 647, 1194
BstNI	CCWGG	1 cut(s)	1235
BstSCI	CCNGG	4 cut(s)	158, 627, 747, 1233
BstUI	CGCG	1 cut(s)	933
BstV1I	GCAGC	3 cut(s)	115, 118, 1206
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	260, 1066
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	283, 1243
BtsIMutI	CAGTG	2 cut(s)	292, 1190
Cac8I	GCNNGC	2 cut(s)	573, 648
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	935
Cfr13I	GGNCC	6 cut(s)	92, 230, 259, 556, 1065, 1159
Csp6I	GTAC	2 cut(s)	770, 973
CviAII	CATG	3 cut(s)	515, 766, 1156
CviQI	GTAC	2 cut(s)	770, 973
DdeI	CTNAG	6 cut(s)	468, 642, 705, 831, 1002, 1190
DpnI	GATC	3 cut(s)	5, 354, 711
DpnII	GATC	3 cut(s)	3, 352, 709
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
Eco130I	CCWWGG	1 cut(s)	1099
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	4 cut(s)	92, 230, 556, 1159
Eco57I	CTGAAG	1 cut(s)	572
EcoO109I	RGGNCCY	2 cut(s)	230, 259
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	1233
EcoT14I	CCWWGG	1 cut(s)	1099
EcoT22I	ATGCAT	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	1099
FaeI	CATG	3 cut(s)	518, 769, 1159
FaqI	GGGAC	1 cut(s)	1145
FatI	CATG	3 cut(s)	514, 765, 1155
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	3 cut(s)	129, 132, 1195
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	129, 132, 1195
FspBI	CTAG	2 cut(s)	647, 869
GlaI	GCGC	1 cut(s)	934
GluI	GCNGC	3 cut(s)	129, 132, 1195
GsaI	CCCAGC	1 cut(s)	1135
HaeIII	GGCC	2 cut(s)	260, 1066
HapII	CCGG	4 cut(s)	159, 219, 629, 748
HhaI	GCGC	1 cut(s)	935
Hin1II	CATG	3 cut(s)	518, 769, 1159
Hin6I	GCGC	1 cut(s)	933
HinP1I	GCGC	1 cut(s)	933
HinfI	GANTC	7 cut(s)	184, 511, 701, 739, 829, 940, 1217
HpaII	CCGG	4 cut(s)	159, 219, 629, 748
HphI	GGTGA	2 cut(s)	460, 1115
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	5 cut(s)	495, 706, 834, 1033, 1141
Hpy188III	TCNNGA	6 cut(s)	168, 246, 313, 515, 530, 1121
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	2 cut(s)	361, 1176
HpyAV	CCTTC	4 cut(s)	370, 517, 898, 956
HpyCH4III	ACNGT	3 cut(s)	198, 1039, 1053
HpyCH4V	TGCA	8 cut(s)	62, 134, 241, 290, 457, 851, 996, 1155
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 397, 647, 1194
HpyF3I	CTNAG	6 cut(s)	468, 642, 705, 831, 1002, 1190
Hsp92II	CATG	3 cut(s)	518, 769, 1159
HspAI	GCGC	1 cut(s)	933
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 352, 709
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	2 cut(s)	248, 568
Lsp1109I	GCAGC	3 cut(s)	115, 118, 1206
LweI	GCATC	4 cut(s)	49, 143, 628, 1009
MaeI	CTAG	2 cut(s)	647, 869
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	3 cut(s)	5, 354, 711
MboI	GATC	3 cut(s)	3, 352, 709
MboII	GAAGA	8 cut(s)	135, 373, 498, 532, 578, 799, 920, 1124
MhlI	GDGCHC	1 cut(s)	915
MlyI	GAGTC	2 cut(s)	695, 823
MmeI	TCCRAC	2 cut(s)	546, 1194
Mph1103I	ATGCAT	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	1116
MseI	TTAA	4 cut(s)	81, 105, 611, 731
MspA1I	CMGCKG	1 cut(s)	1150
MspI	CCGG	4 cut(s)	159, 219, 629, 748
MspR9I	CCNGG	4 cut(s)	160, 629, 749, 1235
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	1235
MvnI	CGCG	1 cut(s)	933
MwoI	GCNNNNNNNGC	4 cut(s)	257, 397, 647, 1194
NciI	CCSGG	3 cut(s)	160, 629, 749
NdeII	GATC	3 cut(s)	3, 352, 709
NheI	GCTAGC	1 cut(s)	646
NlaIII	CATG	3 cut(s)	518, 769, 1159
NlaIV	GGNNCC	5 cut(s)	94, 157, 250, 570, 1161
NmeAIII	GCCGAG	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	64
NspV	TTCGAA	3 cut(s)	146, 434, 509
PagI	TCATGA	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	903
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	5 cut(s)	184, 511, 739, 940, 1217
PflMI	CCANNNNNTGG	1 cut(s)	565
PfoI	TCCNGGA	1 cut(s)	1233
PkrI	GCNGC	3 cut(s)	130, 133, 1196
PleI	GAGTC	2 cut(s)	695, 823
PpsI	GAGTC	2 cut(s)	695, 823
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	1233
PspFI	CCCAGC	1 cut(s)	1131
PspGI	CCWGG	1 cut(s)	1233
PspN4I	GGNNCC	5 cut(s)	94, 157, 250, 570, 1161
PspPI	GGNCC	6 cut(s)	92, 230, 259, 556, 1065, 1159
PspPPI	RGGWCCY	1 cut(s)	230
RsaI	GTAC	2 cut(s)	771, 974
RsaNI	GTAC	2 cut(s)	770, 973
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	4 cut(s)	81, 105, 611, 731
SatI	GCNGC	3 cut(s)	129, 132, 1195
Sau3AI	GATC	3 cut(s)	3, 352, 709
Sau96I	GGNCC	6 cut(s)	92, 230, 259, 556, 1065, 1159
SchI	GAGTC	2 cut(s)	695, 823
ScrFI	CCNGG	4 cut(s)	160, 629, 749, 1235
SduI	GDGCHC	1 cut(s)	915
SfaNI	GCATC	4 cut(s)	49, 143, 628, 1009
SfuI	TTCGAA	3 cut(s)	146, 434, 509
SinI	GGWCC	4 cut(s)	92, 230, 556, 1159
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SsiI	CCGC	2 cut(s)	931, 1150
SspMI	CTAG	2 cut(s)	647, 869
StyD4I	CCNGG	4 cut(s)	158, 627, 747, 1233
StyI	CCWWGG	1 cut(s)	1099
TaaI	ACNGT	3 cut(s)	198, 1039, 1053
TaqI	TCGA	8 cut(s)	31, 41, 146, 359, 434, 509, 775, 1174
TfiI	GAWTC	5 cut(s)	184, 511, 739, 940, 1217
Tru1I	TTAA	4 cut(s)	81, 105, 611, 731
Tru9I	TTAA	4 cut(s)	81, 105, 611, 731
TscAI	CASTG	2 cut(s)	292, 1190
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	3 cut(s)	128, 131, 1194
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	5 cut(s)	298, 411, 754, 772, 808
TspGWI	ACGGA	2 cut(s)	345, 1160
TspRI	CASTG	2 cut(s)	292, 1190
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	4 cut(s)	92, 230, 556, 1159
XapI	RAATTY	5 cut(s)	12, 148, 437, 864, 1142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	2 cut(s)	647, 869
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.