Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

3227158 .. 3230440

Gene Structure 3283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G044800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAATCAGACGCAGAAGACACCAAGTCCCAAATGACCCAAAACCCATCAACGCCACAAACCCACAGGCACAAGAAGAAGAAGAAGAAAATCCCAACAGTCCAAGCCACAATCCAAGTCGTCCCAGACATCCCAGAGAAAACCCCTCCTTTGGTAGGCTATTTCCCATGTAGCTTCGACCCCACCAAGAGCCCATACTCCAATTCAACCGATGTTGGGTTGTTTAGGGACAGCAAAAAACCTAGAAGACTTCAGATTGTGGTGACCCCAAATGGGACCAATGTTGATTTTGTTGGCACTAACTATACTGGTGAGGCCACGACTGGGCAGAGCTGCAATTTTGCACTTGGGGTTCTTGATAAGGCCACCCAGACTTTGAAGATTTTGCCCGTTGCTTCTAACAAGATATTTAGATTACAACCAATGGTTAGAGGCTATAACTACTCTGCTAAGGAGCCTGAAAGTTCAGTGAAGGAACAACTTACTGGAGAAGAGAAGGCCGAGAAGCAAATGGAGCTCCAGAGTCGCTATGGAACGAAGAAGGCAATTAGGGAGAGCAAAAAACTGCGCTCCTTGAAGCAAGAAGACGGTCCTGAATCTCAAAAGGATTTGGATGCCAAAATCAAACTCATTGTGCCAAACAAGGAGGCTCTAGAAAGTACTGAAAGCCAAATCTCTCGCCATATCCCACCATTTAATGAATCTGCCACCACTCCCCAAGAAGCATATTCACTGGACAAGATCATCCTCACAGGAGAGTGGGATCTACTTGGAGATATTTATGAGCATTTTCAAGGTGGAGCAGAAGTTTCATGGGATGCTTTCCCAAGATTTGTTTGCCACAGAATCCATAAATTGCAGGATATTGAGGTTGACGAGGAGAAGTTTAAGCTTTCTTGCATATTCTCATACATTACGCATCTTATAAAGTTCAAAGATCAGCATTCCATGGATGGTATTTCCTCGTCCAGGACCCACAGGATCCCAAACCTTCTATTCCATAAGTTTTCAACTATGTTTCCTACGGAGTCAAAGGGCCTATCAAATGAGAAAACTAATCTCCTCATTAGTTATGTCTTGGTGCTTACTCTTTTCGTGGATGAATTCGAGACAGATTTAACAGATATAGCAAAGGATCTGAGAATGAGCGCAATAGCTTTGAGAAAGCATTATGAGAACCTTGGTTGCAAGCTCGTACGCAAAAGAAACGTAATGTTTGCTACCCTTCCAGTCCCTCTACAATTTCCACAATTGCGGCAGAGGCGGCAGAAGCGCAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

428

Amino Acids

48.74

Weight (kDa)

9.19

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
AciI	CCGC	2 cut(s)	1255, 1264
AclWI	GGATC	4 cut(s)	771, 976, 989, 1143
AcsI	RAATTY	1 cut(s)	1103
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	661, 1197
AfiI	CCNNNNNNNGG	6 cut(s)	151, 155, 216, 273, 324, 969
AgsI	TTSAA	6 cut(s)	207, 379, 577, 794, 934, 1011
AhdI	GACNNNNNGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	968
AluBI	AGCT	6 cut(s)	174, 333, 517, 892, 1157, 1192
AluI	AGCT	6 cut(s)	174, 333, 517, 892, 1157, 1192
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	1103
AlwI	GGATC	4 cut(s)	771, 976, 989, 1143
AoxI	GGCC	4 cut(s)	315, 363, 498, 1036
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	1103
AspLEI	GCGC	3 cut(s)	570, 1151, 1275
AspS9I	GGNCC	4 cut(s)	276, 590, 972, 1036
AsuHPI	GGTGA	2 cut(s)	274, 323
AvaII	GGWCC	3 cut(s)	276, 590, 972
BamHI	GGATCC	1 cut(s)	981
BanII	GRGCYC	2 cut(s)	194, 519
BbsI	GAAGAC	3 cut(s)	24, 253, 591
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	2 cut(s)	55, 947
BciT130I	CCWGG	1 cut(s)	970
BcoDI	GTCTC	1 cut(s)	1103
BfaI	CTAG	2 cut(s)	243, 653
BisI	GCNGC	3 cut(s)	334, 1256, 1265
BlsI	GCNGC	3 cut(s)	335, 1257, 1266
BmcAI	AGTACT	1 cut(s)	661
Bme1390I	CCNGG	1 cut(s)	970
Bme18I	GGWCC	3 cut(s)	276, 590, 972
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmgT120I	GGNCC	4 cut(s)	276, 590, 972, 1036
BmiI	GGNNCC	4 cut(s)	277, 456, 974, 983
BmrFI	CCNGG	1 cut(s)	970
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	3 cut(s)	604, 808, 928
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	3 cut(s)	24, 253, 591
BpmI	CTGGAG	2 cut(s)	503, 507
Bpu10I	CCTNAGC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	948, 1180
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	6 cut(s)	151, 155, 216, 273, 324, 969
Bse1I	ACTGG	5 cut(s)	313, 328, 490, 738, 1229
BseBI	CCWGG	1 cut(s)	970
BseDI	CCNNGG	2 cut(s)	948, 1180
BseGI	GGATG	6 cut(s)	129, 619, 744, 823, 958, 1105
BseLI	CCNNNNNNNGG	6 cut(s)	151, 155, 216, 273, 324, 969
BseMII	CTCAG	1 cut(s)	1130
BseNI	ACTGG	5 cut(s)	313, 328, 490, 738, 1229
BseRI	GAGGAG	2 cut(s)	893, 1052
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	4 cut(s)	317, 365, 500, 1038
BsiHKAI	GWGCWC	1 cut(s)	519
BsiWI	CGTACG	1 cut(s)	1195
BslFI	GGGAC	5 cut(s)	13, 107, 242, 289, 1217
BslI	CCNNNNNNNGG	6 cut(s)	151, 155, 216, 273, 324, 969
BsmAI	GTCTC	1 cut(s)	1103
BsmFI	GGGAC	5 cut(s)	13, 107, 242, 289, 1217
BsmI	GAATGC	1 cut(s)	943
BsnI	GGCC	4 cut(s)	317, 365, 500, 1038
Bsp1286I	GDGCHC	2 cut(s)	194, 519
Bsp143I	GATC	5 cut(s)	741, 763, 937, 981, 1135
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	2 cut(s)	1255, 1264
BspANI	GGCC	4 cut(s)	317, 365, 500, 1038
BspCNI	CTCAG	1 cut(s)	1131
BspLI	GGNNCC	4 cut(s)	277, 456, 974, 983
BspPI	GGATC	4 cut(s)	771, 976, 989, 1143
BsrI	ACTGG	5 cut(s)	313, 328, 490, 738, 1229
BssECI	CCNNGG	2 cut(s)	948, 1180
BssMI	GATC	5 cut(s)	741, 763, 937, 981, 1135
BssT1I	CCWWGG	2 cut(s)	948, 1180
Bst2UI	CCWGG	1 cut(s)	970
Bst4CI	ACNGT	2 cut(s)	100, 590
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	1190
BstDEI	CTNAG	2 cut(s)	450, 1139
BstDSI	CCRYGG	1 cut(s)	948
BstEII	GGTNACC	1 cut(s)	262
BstENI	CCTNNNNNAGG	2 cut(s)	153, 967
BstF5I	GGATG	6 cut(s)	129, 619, 744, 823, 958, 1105
BstHHI	GCGC	3 cut(s)	570, 1151, 1275
BstKTI	GATC	5 cut(s)	744, 766, 940, 984, 1138
BstMAI	GTCTC	1 cut(s)	1103
BstMBI	GATC	5 cut(s)	741, 763, 937, 981, 1135
BstMWI	GCNNNNNNNGC	4 cut(s)	514, 1261, 1264, 1270
BstNI	CCWGG	1 cut(s)	970
BstPI	GGTNACC	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	968
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	3 cut(s)	24, 253, 591
BstX2I	RGATCY	3 cut(s)	763, 981, 1135
BstYI	RGATCY	3 cut(s)	763, 981, 1135
BsuRI	GGCC	4 cut(s)	317, 365, 500, 1038
BtgI	CCRYGG	1 cut(s)	948
BtsCI	GGATG	6 cut(s)	129, 619, 744, 823, 958, 1105
BtsIMutI	CAGTG	2 cut(s)	474, 731
Cac8I	GCNNGC	1 cut(s)	1190
CfoI	GCGC	3 cut(s)	570, 1151, 1275
Cfr13I	GGNCC	4 cut(s)	276, 590, 972, 1036
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	660, 1196
CviAII	CATG	3 cut(s)	168, 813, 949
CviQI	GTAC	2 cut(s)	660, 1196
DdeI	CTNAG	2 cut(s)	450, 1139
DpnI	GATC	5 cut(s)	743, 765, 939, 983, 1137
DpnII	GATC	5 cut(s)	741, 763, 937, 981, 1135
DriI	GACNNNNNGTC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	486
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	2 cut(s)	948, 1180
Eco24I	GRGCYC	2 cut(s)	194, 519
Eco47I	GGWCC	3 cut(s)	276, 590, 972
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	517
EcoNI	CCTNNNNNAGG	2 cut(s)	153, 967
EcoO109I	RGGNCCY	2 cut(s)	972, 1036
EcoO65I	GGTNACC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	1103
EcoRII	CCWGG	1 cut(s)	968
EcoT14I	CCWWGG	2 cut(s)	948, 1180
EcoT38I	GRGCYC	2 cut(s)	194, 519
ErhI	CCWWGG	2 cut(s)	948, 1180
FaeI	CATG	3 cut(s)	171, 816, 952
FaqI	GGGAC	5 cut(s)	13, 107, 242, 289, 1217
FatI	CATG	3 cut(s)	167, 812, 948
Fnu4HI	GCNGC	3 cut(s)	334, 1256, 1265
FokI	GGATG	6 cut(s)	116, 626, 731, 830, 965, 1112
FriOI	GRGCYC	2 cut(s)	194, 519
Fsp4HI	GCNGC	3 cut(s)	334, 1256, 1265
FspBI	CTAG	2 cut(s)	243, 653
GlaI	GCGC	3 cut(s)	569, 1150, 1274
GluI	GCNGC	3 cut(s)	334, 1256, 1265
GsuI	CTGGAG	2 cut(s)	503, 507
HaeIII	GGCC	4 cut(s)	317, 365, 500, 1038
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	3 cut(s)	570, 1151, 1275
Hin1II	CATG	3 cut(s)	171, 816, 952
Hin6I	GCGC	3 cut(s)	568, 1149, 1273
HinP1I	GCGC	3 cut(s)	568, 1149, 1273
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	890
HinfI	GANTC	6 cut(s)	5, 523, 596, 701, 846, 1028
HphI	GGTGA	2 cut(s)	274, 323
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	3 cut(s)	10, 255, 1140
Hpy188III	TCNNGA	5 cut(s)	356, 520, 593, 653, 1108
Hpy8I	GTNNAC	1 cut(s)	874
HpyAV	CCTTC	5 cut(s)	466, 490, 535, 1001, 1235
HpyCH4III	ACNGT	2 cut(s)	100, 590
HpyCH4IV	ACGT	1 cut(s)	1209
HpyCH4V	TGCA	5 cut(s)	336, 344, 859, 900, 1188
HpyF10VI	GCNNNNNNNGC	4 cut(s)	514, 1261, 1264, 1270
HpyF3I	CTNAG	2 cut(s)	450, 1139
HpySE526I	ACGT	1 cut(s)	1209
Hsp92II	CATG	3 cut(s)	171, 816, 952
HspAI	GCGC	3 cut(s)	568, 1149, 1273
Kzo9I	GATC	5 cut(s)	741, 763, 937, 981, 1135
LmnI	GCTCC	5 cut(s)	454, 514, 522, 575, 800
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	3 cut(s)	604, 808, 928
MaeI	CTAG	2 cut(s)	243, 653
MaeII	ACGT	1 cut(s)	1209
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	5 cut(s)	743, 765, 939, 983, 1137
MboI	GATC	5 cut(s)	741, 763, 937, 981, 1135
MfeI	CAATTG	1 cut(s)	1250
MflI	RGATCY	3 cut(s)	763, 981, 1135
MhlI	GDGCHC	2 cut(s)	194, 519
MluCI	AATT	7 cut(s)	202, 337, 546, 854, 1103, 1241, 1250
MlyI	GAGTC	2 cut(s)	532, 1037
MseI	TTAA	3 cut(s)	696, 888, 1118
MspR9I	CCNGG	1 cut(s)	970
MunI	CAATTG	1 cut(s)	1250
Mva1269I	GAATGC	1 cut(s)	943
MvaI	CCWGG	1 cut(s)	970
MwoI	GCNNNNNNNGC	4 cut(s)	514, 1261, 1264, 1270
NcoI	CCATGG	1 cut(s)	948
NdeII	GATC	5 cut(s)	741, 763, 937, 981, 1135
NlaIII	CATG	3 cut(s)	171, 816, 952
NlaIV	GGNNCC	4 cut(s)	277, 456, 974, 983
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	262
PctI	GAATGC	1 cut(s)	943
PfeI	GAWTC	4 cut(s)	5, 596, 701, 846
Pfl23II	CGTACG	1 cut(s)	1195
PfoI	TCCNGGA	1 cut(s)	968
PkrI	GCNGC	3 cut(s)	335, 1257, 1266
PleI	GAGTC	2 cut(s)	531, 1036
PpsI	GAGTC	2 cut(s)	531, 1036
PpuMI	RGGWCCY	1 cut(s)	972
PsiI	TTATAA	1 cut(s)	926
Psp124BI	GAGCTC	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	972
Psp6I	CCWGG	1 cut(s)	968
PspEI	GGTNACC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	968
PspLI	CGTACG	1 cut(s)	1195
PspN4I	GGNNCC	4 cut(s)	277, 456, 974, 983
PspPI	GGNCC	4 cut(s)	276, 590, 972, 1036
PspPPI	RGGWCCY	1 cut(s)	972
PsuI	RGATCY	3 cut(s)	763, 981, 1135
RsaI	GTAC	2 cut(s)	661, 1197
RsaNI	GTAC	2 cut(s)	660, 1196
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	3 cut(s)	696, 888, 1118
SatI	GCNGC	3 cut(s)	334, 1256, 1265
Sau3AI	GATC	5 cut(s)	741, 763, 937, 981, 1135
Sau96I	GGNCC	4 cut(s)	276, 590, 972, 1036
ScaI	AGTACT	1 cut(s)	661
SchI	GAGTC	2 cut(s)	532, 1037
ScrFI	CCNGG	1 cut(s)	970
SduI	GDGCHC	2 cut(s)	194, 519
SfaNI	GCATC	3 cut(s)	604, 808, 928
SinI	GGWCC	3 cut(s)	276, 590, 972
Sse9I	AATT	7 cut(s)	202, 337, 546, 854, 1103, 1241, 1250
SsiI	CCGC	2 cut(s)	1255, 1264
SspMI	CTAG	2 cut(s)	243, 653
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	1 cut(s)	968
StyI	CCWWGG	2 cut(s)	948, 1180
TaaI	ACNGT	2 cut(s)	100, 590
TaiI	ACGT	1 cut(s)	1212
TaqI	TCGA	2 cut(s)	177, 1107
TasI	AATT	7 cut(s)	202, 337, 546, 854, 1103, 1241, 1250
TatI	WGTACW	1 cut(s)	659
TauI	GCSGC	2 cut(s)	1258, 1267
TfiI	GAWTC	4 cut(s)	5, 596, 701, 846
Tru1I	TTAA	3 cut(s)	696, 888, 1118
Tru9I	TTAA	3 cut(s)	696, 888, 1118
TscAI	CASTG	2 cut(s)	474, 738
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	714, 801, 1116
TspGWI	ACGGA	1 cut(s)	1040
TspRI	CASTG	2 cut(s)	474, 738
VpaK11BI	GGWCC	3 cut(s)	276, 590, 972
XagI	CCTNNNNNAGG	2 cut(s)	153, 967
XapI	RAATTY	1 cut(s)	1103
XbaI	TCTAGA	1 cut(s)	652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XspI	CTAG	2 cut(s)	243, 653
ZrmI	AGTACT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.