Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029020.1

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

1699 .. 2061

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029020.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgcagaccttgaagcaagaagatgatccggattctcaaaatgatatggatgcaatcaaacaaggtatgacaaacagggaggatactgaagcttctgaaggccatacagaccgcaataccccaccatttaatgcttctgccaccactccccaggaggcttatccactggataaaatcatcaccacaggggagtggaaattcctccaagatattaataagcttttggaaggtggagcagaaatctcacagaattcttttccaacatttgtttgcaaccggatccataaactgcagctgattgaggtcagggttcgaaagttagttgtaatgtttaatattcagttgtgtttaggtgaattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

120

Amino Acids

13.62

Weight (kDa)

4.72

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	3 cut(s)	20, 274, 287
AcsI	RAATTY	2 cut(s)	197, 250
AcuI	CTGAAG	2 cut(s)	108, 117
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	92, 220, 295
AluI	AGCT	3 cut(s)	92, 220, 295
AlwI	GGATC	3 cut(s)	20, 274, 287
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	197, 250
AseI	ATTAAT	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	76
BfmI	CTRYAG	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	2 cut(s)	28, 276
Bse1I	ACTGG	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	304
BshFI	GGCC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	29, 277
BsnI	GGCC	1 cut(s)	102
Bsp119I	TTCGAA	1 cut(s)	313
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	25, 279
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	102
BspEI	TCCGGA	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	3 cut(s)	20, 274, 287
BspT104I	TTCGAA	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	25, 279
Bst2UI	CCWGG	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	28, 282
BstMBI	GATC	2 cut(s)	25, 279
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	164
CviJI	RGCY	5 cut(s)	92, 102, 158, 220, 295
CviKI_1	RGCY	5 cut(s)	92, 102, 158, 220, 295
DpnI	GATC	2 cut(s)	27, 281
DpnII	GATC	2 cut(s)	25, 279
Eco57I	CTGAAG	2 cut(s)	108, 117
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	150
FaiI	YATR	5 cut(s)	47, 68, 105, 285, 361
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	29, 277
HindIII	AAGCTT	2 cut(s)	90, 218
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	29, 277
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	92, 221
HpyCH4V	TGCA	4 cut(s)	4, 53, 273, 292
Kpn2I	TCCGGA	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	25, 279
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	8 cut(s)	42, 61, 137, 152, 164, 171, 290, 292
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	40
MalI	GATC	2 cut(s)	27, 281
MboI	GATC	2 cut(s)	25, 279
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	1 cut(s)	279
MluCI	AATT	3 cut(s)	197, 250, 356
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	4 cut(s)	73, 148, 212, 295
MroI	TCCGGA	1 cut(s)	28
MseI	TTAA	3 cut(s)	129, 213, 333
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	2 cut(s)	29, 277
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	25, 279
NlaIV	GGNNCC	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	295
SaqAI	TTAA	3 cut(s)	129, 213, 333
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	2 cut(s)	25, 279
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	8 cut(s)	11, 67, 94, 222, 232, 297, 306, 355
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	313
Sse9I	AATT	3 cut(s)	197, 250, 356
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	150
TaqI	TCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	197, 250, 356
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	129, 213, 333
Tru9I	TTAA	3 cut(s)	129, 213, 333
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	292
TspRI	CASTG	1 cut(s)	171
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	2 cut(s)	197, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.