Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005789.1

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

31221 .. 32491

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005789.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggattcagacacagaagaaaccaggtcccaagtgaccgcaaccaaagcagagccatcaaagccatcgcgcaagcacaagaagaggaagaagctcgcagcagaagccaacccggagaagcccaaatcagtgcaagccaccatcaaggtcatcccgggaaacccagagagaatcccacctctggtgggctatttcccatctgggttcgacccgacccagaacccagaccaggattcgaccaaagttggggtctttaggcacaaggagagaggtgggactaggcttcaggttgtggtgaccccaaataaggaggctaaggttgattttgttgggactagctatgctggtgaggctcaggctggggagctctgctcttatggacttgggattcttgataaggacacccagactttgaagattgtgcctattgctagcaacaagatatttagattggagccaaaaattcaaggccttcacttctctggtaaggagcctgcaagttcagcgatgggagaactttctgtacatgagaaggcagaaaaactgtcgaagaggttatcaactgagaaaagtaatcttctcattagttatgtcttggtgctcactctttttgcggatgaattccaaacaagtatgacagacatagcgaaggatctgagaatggggactgcaactttgaggacgcattatgagaagttgggctgcaaggtgtctaagaagaatgtcgtatcaacggttacccttcctgtccccctccaatttccaacagtgaggcgcaagcgacgcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

263

Amino Acids

29.04

Weight (kDa)

9.75

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	2 cut(s)	39, 614
AclWI	GGATC	1 cut(s)	660
AcsI	RAATTY	2 cut(s)	462, 620
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	5 cut(s)	181, 185, 229, 246, 307
AgsI	TTSAA	2 cut(s)	415, 467
AjnI	CCWGG	2 cut(s)	23, 228
AluBI	AGCT	3 cut(s)	94, 339, 367
AluI	AGCT	3 cut(s)	94, 339, 367
Alw21I	GWGCWC	2 cut(s)	369, 603
AlwI	GGATC	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	98, 702
ApoI	RAATTY	2 cut(s)	462, 620
ArsI	GACNNNNNNTTYG	4 cut(s)	234, 266, 658, 690
AspLEI	GCGC	2 cut(s)	72, 777
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	3 cut(s)	113, 155, 156
AsuHPI	GGTGA	2 cut(s)	307, 359
AsuNHI	GCTAGC	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	369, 603
BbvI	GCAGC	2 cut(s)	110, 689
BccI	CCATC	5 cut(s)	64, 73, 149, 205, 502
BciT130I	CCWGG	2 cut(s)	25, 230
BcnI	CCSGG	3 cut(s)	113, 155, 156
BfaI	CTAG	3 cut(s)	279, 336, 432
BisI	GCNGC	2 cut(s)	99, 703
BlsI	GCNGC	2 cut(s)	100, 704
Bme1390I	CCNGG	5 cut(s)	25, 113, 155, 156, 230
Bme18I	GGWCC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	29, 456, 492
BmrFI	CCNGG	5 cut(s)	25, 113, 155, 156, 230
BmtI	GCTAGC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu10I	CCTNAGC	2 cut(s)	315, 354
BpuMI	CCSGG	3 cut(s)	113, 155, 156
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 185, 229, 246, 307
BseBI	CCWGG	2 cut(s)	25, 230
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	150, 622
BseLI	CCNNNNNNNGG	5 cut(s)	181, 185, 229, 246, 307
BseMII	CTCAG	3 cut(s)	368, 555, 647
BseXI	GCAGC	2 cut(s)	110, 689
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	471
BsiHKAI	GWGCWC	2 cut(s)	369, 603
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	113, 155
BslFI	GGGAC	5 cut(s)	13, 289, 346, 679, 734
BslI	CCNNNNNNNGG	5 cut(s)	181, 185, 229, 246, 307
BsmFI	GGGAC	5 cut(s)	13, 289, 346, 679, 734
BsnI	GGCC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	369, 603
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	1 cut(s)	652
BspACI	CCGC	2 cut(s)	39, 614
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	3 cut(s)	367, 556, 648
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	29, 456, 492
BspOI	GCTAGC	1 cut(s)	435
BspPI	GGATC	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	652
Bst2UI	CCWGG	2 cut(s)	25, 230
Bst4CI	ACNGT	3 cut(s)	546, 736, 769
Bst6I	CTCTTC	2 cut(s)	77, 545
BstAUI	TGTACA	1 cut(s)	523
BstC8I	GCNNGC	6 cut(s)	74, 96, 135, 433, 495, 779
BstDEI	CTNAG	5 cut(s)	315, 354, 564, 656, 714
BstEII	GGTNACC	2 cut(s)	295, 736
BstF5I	GGATG	2 cut(s)	150, 622
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	72, 777
BstKTI	GATC	1 cut(s)	655
BstMBI	GATC	1 cut(s)	652
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 61, 104, 350, 503, 783
BstNI	CCWGG	2 cut(s)	25, 230
BstPI	GGTNACC	2 cut(s)	295, 736
BstSCI	CCNGG	5 cut(s)	23, 111, 153, 154, 228
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	110, 689
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	471
BtgZI	GCGATG	2 cut(s)	51, 521
BtsCI	GGATG	2 cut(s)	150, 622
BtsIMutI	CAGTG	2 cut(s)	135, 774
Cac8I	GCNNGC	6 cut(s)	74, 96, 135, 433, 495, 779
CfoI	GCGC	2 cut(s)	72, 777
Cfr13I	GGNCC	1 cut(s)	27
Cfr9I	CCCGGG	1 cut(s)	154
CseI	GACGC	1 cut(s)	691
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	1 cut(s)	527
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	5 cut(s)	315, 354, 564, 656, 714
DpnI	GATC	1 cut(s)	654
DpnII	GATC	1 cut(s)	652
Eam1104I	CTCTTC	2 cut(s)	77, 545
EarI	CTCTTC	2 cut(s)	77, 545
Ecl136II	GAGCTC	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	154
Eco91I	GGTNACC	2 cut(s)	295, 736
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	27
EcoO65I	GGTNACC	2 cut(s)	295, 736
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	23, 228
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	1 cut(s)	530
FaiI	YATR	7 cut(s)	342, 378, 528, 591, 635, 644, 690
FaqI	GGGAC	5 cut(s)	13, 289, 346, 679, 734
FatI	CATG	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	99, 703
FokI	GGATG	2 cut(s)	137, 629
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	99, 703
FspBI	CTAG	3 cut(s)	279, 336, 432
GlaI	GCGC	2 cut(s)	71, 776
GluI	GCNGC	2 cut(s)	99, 703
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	2 cut(s)	113, 155
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	2 cut(s)	72, 777
Hin1II	CATG	1 cut(s)	530
Hin6I	GCGC	2 cut(s)	70, 775
HinP1I	GCGC	2 cut(s)	70, 775
HinfI	GANTC	4 cut(s)	5, 171, 233, 388
HpaII	CCGG	2 cut(s)	113, 155
HphI	GGTGA	2 cut(s)	307, 359
Hpy188I	TCNGA	2 cut(s)	10, 657
Hpy188III	TCNNGA	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	786
HpyAV	CCTTC	4 cut(s)	482, 526, 643, 752
HpyCH4III	ACNGT	3 cut(s)	546, 736, 769
HpyCH4V	TGCA	4 cut(s)	133, 497, 671, 705
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 61, 104, 350, 503, 783
HpyF3I	CTNAG	5 cut(s)	315, 354, 564, 656, 714
Hsp92II	CATG	1 cut(s)	530
HspAI	GCGC	2 cut(s)	70, 775
Kzo9I	GATC	1 cut(s)	652
LmnI	GCTCC	3 cut(s)	364, 454, 490
Lsp1109I	GCAGC	2 cut(s)	110, 689
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	3 cut(s)	279, 336, 432
MaeIII	GTNAC	3 cut(s)	34, 295, 736
MalI	GATC	1 cut(s)	654
MboI	GATC	1 cut(s)	652
MboII	GAAGA	7 cut(s)	29, 94, 100, 427, 562, 569, 730
MfeI	CAATTG	1 cut(s)	787
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	369, 603
MluCI	AATT	4 cut(s)	462, 620, 758, 787
MmeI	TCCRAC	1 cut(s)	788
MnlI	CCTC	9 cut(s)	78, 189, 263, 304, 343, 546, 672, 764, 765
MspI	CCGG	2 cut(s)	113, 155
MspR9I	CCNGG	5 cut(s)	25, 113, 155, 156, 230
MunI	CAATTG	1 cut(s)	787
MvaI	CCWGG	2 cut(s)	25, 230
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	6 cut(s)	47, 61, 104, 350, 503, 783
NciI	CCSGG	3 cut(s)	113, 155, 156
NdeII	GATC	1 cut(s)	652
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	3 cut(s)	29, 456, 492
NmuCI	GTSAC	2 cut(s)	34, 295
PceI	AGGCCT	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	5, 171, 233, 388
PkrI	GCNGC	2 cut(s)	100, 704
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	23, 228
PspEI	GGTNACC	2 cut(s)	295, 736
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	23, 228
PspN4I	GGNNCC	3 cut(s)	29, 456, 492
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	369
SatI	GCNGC	2 cut(s)	99, 703
Sau3AI	GATC	1 cut(s)	652
Sau96I	GGNCC	1 cut(s)	27
ScrFI	CCNGG	5 cut(s)	25, 113, 155, 156, 230
SduI	GDGCHC	2 cut(s)	369, 603
SexAI	ACCWGGT	1 cut(s)	23
SinI	GGWCC	1 cut(s)	27
SmaI	CCCGGG	1 cut(s)	156
Sse9I	AATT	4 cut(s)	462, 620, 758, 787
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	2 cut(s)	39, 614
SspMI	CTAG	3 cut(s)	279, 336, 432
SstI	GAGCTC	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	471
StyD4I	CCNGG	5 cut(s)	23, 111, 153, 154, 228
TaaI	ACNGT	3 cut(s)	546, 736, 769
TaqI	TCGA	3 cut(s)	207, 236, 548
TasI	AATT	4 cut(s)	462, 620, 758, 787
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	4 cut(s)	5, 171, 233, 388
TscAI	CASTG	2 cut(s)	135, 774
TseFI	GTSAC	2 cut(s)	34, 295
TseI	GCWGC	2 cut(s)	98, 702
Tsp45I	GTSAC	2 cut(s)	34, 295
TspDTI	ATGAA	1 cut(s)	633
TspMI	CCCGGG	1 cut(s)	154
TspRI	CASTG	2 cut(s)	135, 774
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	2 cut(s)	462, 620
XmaI	CCCGGG	1 cut(s)	154
XspI	CTAG	3 cut(s)	279, 336, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.