Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007974.1

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Reverse (-)

5742 .. 8922

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007974.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atggattcagaagacaccatatcccaacaagagccatcaacaccagctcgcaagcacaagaagaagaggatgaaagtcgcaccagaagacacgcgaagcaacccacagaagccccaaacagtcatcaaagtcattccaggaaacccagagagaatggcacctttggtgggctatttcccatctgggtttgatcccaccaaaagctcagatctaaactcaaccaaagttggggtcttcaggcacaaagagagaagtggtactcggcttcagcttgtggtaaccccagaaaaggatgctgaagttgatttcgttggaactagctatgctggtgaggctcaggctggggagcactgtgcttatggacttggtattcttgataaggccacccacacattgaagattgtgcctattgctaataacaaggtatttagattagaaccaaaagttcaaggtgctgactcctctaataaggagcttgcaagttcagtgattggaaaactttctgcacatgagaagacagaaaaacttacagaacttcataatcgttatggaacaaagaagtcaatacggcagaacaaaagaatgcaaaccttgaagcacggagatgatcctgttgctcaaaatgatttgaatgcaatcaaaaatggtatgacaaacagggaggatcttgaagaagtttccgaatgccataatgatcgcaataccccaccatttaatgcttctgccaccactccccaggaggcttatccactggacaagatcatctccacagcagagtggaaattcctccaagatatccataagcttgtggaagggggatcagaacttccccggtttgttagcaaccgaatccataaactgcagcagattgtggatgaagagaagaagaacaagcttgcttgtattttctcatatattatgcaccttataaagttcaaagatctgcattccatggagctcaaggagatttcagctgatgaagagaagaagaacaagcttgcttgtattttctcatatattatgcaccttataaagttcaaagatctgcattccatggagctcaaggggcatttctttccaaaggcccacagattcccaagcattataagggacaaattttcaagaatgtttgatgcagtgtcgagaaagctatcaaccgaaaaaagtaatcttctcattagttatgtcctggtgctcactctatttgtggatgaattccaaacaagtttgacagacatagcaaaggatctgagaatgagtacctcaaagttgaggacgcattatgagatcttgggttgcaaggtgtctaagaagaacaactttataacggttacccttcctgtccccctccaatttccaacactgaagcgcaagcgaagcaatagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

462

Amino Acids

52.53

Weight (kDa)

9.45

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	929, 1031, 1106, 1325
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	1 cut(s)	94
AclWI	GGATC	5 cut(s)	185, 602, 672, 826, 1254
AcsI	RAATTY	3 cut(s)	782, 1115, 1214
AcuI	CTGAAG	4 cut(s)	220, 251, 318, 1385
AfaI	GTAC	2 cut(s)	259, 1261
AfiI	CCNNNNNNNGG	3 cut(s)	167, 228, 289
AgsI	TTSAA	8 cut(s)	397, 449, 595, 631, 671, 937, 1039, 1122
AjnI	CCWGG	3 cut(s)	136, 735, 1188
Alw21I	GWGCWC	4 cut(s)	351, 960, 1062, 1197
AlwI	GGATC	5 cut(s)	185, 602, 672, 826, 1254
AoxI	GGCC	2 cut(s)	381, 1083
ApeKI	GCWGC	1 cut(s)	862
ApoI	RAATTY	3 cut(s)	782, 1115, 1214
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
Asp700I	GAANNNNTTC	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	1371
AspS9I	GGNCC	1 cut(s)	1084
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	2 cut(s)	960, 1062
BbsI	GAAGAC	4 cut(s)	18, 93, 226, 521
Bbv12I	GWGCWC	4 cut(s)	351, 960, 1062, 1197
BbvI	GCAGC	1 cut(s)	874
BccI	CCATC	2 cut(s)	43, 187
BceAI	ACGGC	1 cut(s)	584
BciT130I	CCWGG	3 cut(s)	138, 737, 1190
BcnI	CCSGG	1 cut(s)	832
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	860
BglII	AGATCT	4 cut(s)	208, 940, 1042, 1287
BisI	GCNGC	1 cut(s)	863
BlsI	GCNGC	1 cut(s)	864
Bme1390I	CCNGG	4 cut(s)	138, 737, 832, 1190
BmgT120I	GGNCC	1 cut(s)	1084
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	4 cut(s)	138, 737, 832, 1190
BmsI	GCATC	2 cut(s)	283, 1123
BpiI	GAAGAC	4 cut(s)	18, 93, 226, 521
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	944, 1046
BpuMI	CCSGG	1 cut(s)	832
BsaJI	CCNNGG	4 cut(s)	735, 830, 951, 1053
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 228, 289
Bse1I	ACTGG	1 cut(s)	756
BseBI	CCWGG	3 cut(s)	138, 737, 1190
BseDI	CCNNGG	4 cut(s)	735, 830, 951, 1053
BseGI	GGATG	4 cut(s)	75, 298, 880, 1216
BseLI	CCNNNNNNNGG	3 cut(s)	167, 228, 289
BseMII	CTCAG	3 cut(s)	219, 350, 1241
BseNI	ACTGG	1 cut(s)	756
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	1 cut(s)	874
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	383, 1085
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	4 cut(s)	351, 960, 1062, 1197
BsiSI	CCGG	1 cut(s)	832
BslFI	GGGAC	2 cut(s)	1124, 1328
BslI	CCNNNNNNNGG	3 cut(s)	167, 228, 289
BsmFI	GGGAC	2 cut(s)	1124, 1328
BsmI	GAATGC	5 cut(s)	588, 637, 689, 946, 1048
BsnI	GGCC	2 cut(s)	383, 1085
Bsp1286I	GDGCHC	4 cut(s)	351, 960, 1062, 1197
Bsp19I	CCATGG	2 cut(s)	951, 1053
BspANI	GGCC	2 cut(s)	383, 1085
BspCNI	CTCAG	3 cut(s)	218, 349, 1242
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	864
BspPI	GGATC	5 cut(s)	185, 602, 672, 826, 1254
BspT107I	GGYRCC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	756
BssECI	CCNNGG	4 cut(s)	735, 830, 951, 1053
BssT1I	CCWWGG	2 cut(s)	951, 1053
Bst2UI	CCWGG	3 cut(s)	138, 737, 1190
Bst4CI	ACNGT	3 cut(s)	121, 353, 1330
Bst6I	CTCTTC	3 cut(s)	59, 873, 975
BstC8I	GCNNGC	6 cut(s)	49, 53, 477, 897, 999, 1373
BstDEI	CTNAG	4 cut(s)	205, 336, 1250, 1308
BstDSI	CCRYGG	2 cut(s)	951, 1053
BstEII	GGTNACC	2 cut(s)	277, 1330
BstF5I	GGATG	4 cut(s)	75, 298, 880, 1216
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	1371
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 1066, 1377
BstNI	CCWGG	3 cut(s)	138, 737, 1190
BstPI	GGTNACC	2 cut(s)	277, 1330
BstSCI	CCNGG	4 cut(s)	136, 735, 830, 1188
BstSFI	CTRYAG	1 cut(s)	860
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	874
BstV2I	GAAGAC	4 cut(s)	18, 93, 226, 521
BstX2I	RGATCY	6 cut(s)	208, 664, 940, 1042, 1246, 1287
BstYI	RGATCY	6 cut(s)	208, 664, 940, 1042, 1246, 1287
BsuRI	GGCC	2 cut(s)	383, 1085
BtgI	CCRYGG	2 cut(s)	951, 1053
BtsCI	GGATG	4 cut(s)	75, 298, 880, 1216
BtsI	GCAGTG	1 cut(s)	1143
BtsIMutI	CAGTG	5 cut(s)	349, 492, 749, 1143, 1361
Cac8I	GCNNGC	6 cut(s)	49, 53, 477, 897, 999, 1373
CfoI	GCGC	1 cut(s)	1371
Cfr13I	GGNCC	1 cut(s)	1084
CseI	GACGC	1 cut(s)	1285
Csp6I	GTAC	2 cut(s)	258, 1260
CviAII	CATG	3 cut(s)	509, 952, 1054
CviQI	GTAC	2 cut(s)	258, 1260
DdeI	CTNAG	4 cut(s)	205, 336, 1250, 1308
Eam1104I	CTCTTC	3 cut(s)	59, 873, 975
EarI	CTCTTC	3 cut(s)	59, 873, 975
Ecl136II	GAGCTC	2 cut(s)	958, 1060
Eco130I	CCWWGG	2 cut(s)	951, 1053
Eco24I	GRGCYC	2 cut(s)	960, 1062
Eco32I	GATATC	1 cut(s)	796
Eco53kI	GAGCTC	2 cut(s)	958, 1060
Eco57I	CTGAAG	4 cut(s)	220, 251, 318, 1385
Eco91I	GGTNACC	2 cut(s)	277, 1330
EcoICRI	GAGCTC	2 cut(s)	958, 1060
EcoO65I	GGTNACC	2 cut(s)	277, 1330
EcoRI	GAATTC	1 cut(s)	1214
EcoRII	CCWGG	3 cut(s)	136, 735, 1188
EcoRV	GATATC	1 cut(s)	796
EcoT14I	CCWWGG	2 cut(s)	951, 1053
EcoT38I	GRGCYC	2 cut(s)	960, 1062
ErhI	CCWWGG	2 cut(s)	951, 1053
FaeI	CATG	3 cut(s)	512, 955, 1057
FalI	AAGNNNNNCTT	2 cut(s)	1304, 1336
FaqI	GGGAC	2 cut(s)	1124, 1328
FatI	CATG	3 cut(s)	508, 951, 1053
Fnu4HI	GCNGC	1 cut(s)	863
FokI	GGATG	4 cut(s)	82, 305, 887, 1223
FriOI	GRGCYC	2 cut(s)	960, 1062
Fsp4HI	GCNGC	1 cut(s)	863
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	1370
GluI	GCNGC	1 cut(s)	863
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	383, 1085
HapII	CCGG	1 cut(s)	832
HgaI	GACGC	1 cut(s)	1285
HhaI	GCGC	1 cut(s)	1371
Hin1II	CATG	3 cut(s)	512, 955, 1057
Hin6I	GCGC	1 cut(s)	1369
HinP1I	GCGC	1 cut(s)	1369
HindIII	AAGCTT	3 cut(s)	803, 893, 995
HinfI	GANTC	4 cut(s)	5, 458, 849, 1092
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	1 cut(s)	341
Hpy188I	TCNGA	5 cut(s)	10, 208, 682, 823, 1251
Hpy188III	TCNNGA	4 cut(s)	374, 668, 1122, 1143
HpyAV	CCTTC	2 cut(s)	806, 1346
HpyCH4III	ACNGT	3 cut(s)	121, 353, 1330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 1066, 1377
HpyF3I	CTNAG	4 cut(s)	205, 336, 1250, 1308
Hsp92II	CATG	3 cut(s)	512, 955, 1057
HspAI	GCGC	1 cut(s)	1369
LmnI	GCTCC	4 cut(s)	346, 472, 955, 1057
Lsp1109I	GCAGC	1 cut(s)	874
LweI	GCATC	2 cut(s)	283, 1123
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	277, 1330
MflI	RGATCY	6 cut(s)	208, 664, 940, 1042, 1246, 1287
MhlI	GDGCHC	4 cut(s)	351, 960, 1062, 1197
MluCI	AATT	4 cut(s)	782, 1115, 1214, 1352
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	292, 1382
MnlI	CCTC	9 cut(s)	60, 325, 472, 655, 733, 797, 1266, 1273, 1358
MroXI	GAANNNNTTC	1 cut(s)	499
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	1 cut(s)	832
MspR9I	CCNGG	4 cut(s)	138, 737, 832, 1190
Mva1269I	GAATGC	5 cut(s)	588, 637, 689, 946, 1048
MvaI	CCWGG	3 cut(s)	138, 737, 1190
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	332, 1066, 1377
NciI	CCSGG	1 cut(s)	832
NcoI	CCATGG	2 cut(s)	951, 1053
NlaIII	CATG	3 cut(s)	512, 955, 1057
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	241
PctI	GAATGC	5 cut(s)	588, 637, 689, 946, 1048
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	5, 849, 1092
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	864
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PsiI	TTATAA	4 cut(s)	929, 1031, 1106, 1325
Psp124BI	GAGCTC	2 cut(s)	960, 1062
Psp6I	CCWGG	3 cut(s)	136, 735, 1188
PspEI	GGTNACC	2 cut(s)	277, 1330
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	3 cut(s)	136, 735, 1188
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	1084
PstI	CTGCAG	1 cut(s)	864
PsuI	RGATCY	6 cut(s)	208, 664, 940, 1042, 1246, 1287
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	2 cut(s)	259, 1261
RsaNI	GTAC	2 cut(s)	258, 1260
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	2 cut(s)	960, 1062
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	1 cut(s)	863
Sau96I	GGNCC	1 cut(s)	1084
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	4 cut(s)	138, 737, 832, 1190
SduI	GDGCHC	4 cut(s)	351, 960, 1062, 1197
SfaNI	GCATC	2 cut(s)	283, 1123
SfcI	CTRYAG	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	959, 1061
SmoI	CTYRAG	2 cut(s)	959, 1061
Sse9I	AATT	4 cut(s)	782, 1115, 1214, 1352
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	2 cut(s)	960, 1062
StyD4I	CCNGG	4 cut(s)	136, 735, 830, 1188
StyI	CCWWGG	2 cut(s)	951, 1053
TaaI	ACNGT	3 cut(s)	121, 353, 1330
TaqI	TCGA	1 cut(s)	1142
TasI	AATT	4 cut(s)	782, 1115, 1214, 1352
TfiI	GAWTC	3 cut(s)	5, 849, 1092
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	5 cut(s)	356, 492, 756, 1143, 1368
TseI	GCWGC	1 cut(s)	862
TspDTI	ATGAA	5 cut(s)	86, 527, 891, 993, 1227
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	5 cut(s)	356, 492, 756, 1143, 1368
XapI	RAATTY	3 cut(s)	782, 1115, 1214
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.