Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

8548367 .. 8548714

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATGGTGTTTCCTCCGCGAAGGGCCACAGAATCCCAAGCAATCTACGCAATAAGTTCCTTAACATGTTTGATCCGGCGGCAGGTTCAAGAAGGCAAACCCTATCAAGAGAGAAGACGAATCTCCTCATTAGTTATGTCTTGGTGCTCACTCTTCATGTGGACGAGTTCCAGACAGAGTTGACAGATATAGCAAAGGATCTGAGAATGGGTGAAGCAAATGTGAAGGACCATTACGAGAACTTGGGTTGCAAGTTAACTAAAAAAAAGGGAAAACCAGTCGCGACCCTTCCTGTCCCTCTAAAATTTCCACAAGAGCAGCGGAGGCGGAAGAAGGGCAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

116

Amino Acids

13.12

Weight (kDa)

10.21

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_I_A49	PF06870	11 - 104	1.6e-19	A49-like RNA polymerase I associated factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AccII	CGCG	2 cut(s)	20, 284
AciI	CCGC	4 cut(s)	18, 80, 322, 328
AclWI	GGATC	2 cut(s)	68, 207
AcsI	RAATTY	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	90
Alw21I	GWGCWC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	68, 207
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	25, 229
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	229
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	81, 320
BlsI	GCNGC	2 cut(s)	82, 321
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	25, 229
BpiI	GAAGAC	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	20, 284
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	73, 199
Bsp68I	TCGCGA	1 cut(s)	284
BspACI	CCGC	4 cut(s)	18, 80, 322, 328
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	2 cut(s)	20, 284
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	68, 207
BsrI	ACTGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	73, 199
Bst6I	CTCTTC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	20, 284
BstKTI	GATC	2 cut(s)	76, 202
BstMBI	GATC	2 cut(s)	73, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 325
BstNSI	RCATGY	1 cut(s)	70
BstUI	CGCG	2 cut(s)	20, 284
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	10
BtuMI	TCGCGA	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	25, 229
CviAII	CATG	2 cut(s)	67, 158
CviJI	RGCY	1 cut(s)	27
CviKI_1	RGCY	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	75, 201
DpnII	GATC	2 cut(s)	73, 199
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	229
FaeI	CATG	2 cut(s)	70, 161
FaiI	YATR	4 cut(s)	68, 138, 159, 191
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	66, 157
Fnu4HI	GCNGC	2 cut(s)	81, 320
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	81, 320
GluI	GCNGC	2 cut(s)	81, 320
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	2 cut(s)	70, 161
HincII	GTYRAC	2 cut(s)	183, 258
HindII	GTYRAC	2 cut(s)	183, 258
HinfI	GANTC	2 cut(s)	33, 121
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	3 cut(s)	163, 183, 258
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	4 cut(s)	90, 108, 172, 283
Hpy8I	GTNNAC	3 cut(s)	163, 183, 258
HpyAV	CCTTC	5 cut(s)	16, 87, 220, 299, 328
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 325
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	70, 161
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	73, 199
LpnPI	CCDG	5 cut(s)	69, 90, 185, 291, 306
Lsp1109I	GCAGC	1 cut(s)	331
MalI	GATC	2 cut(s)	75, 201
MboI	GATC	2 cut(s)	73, 199
MboII	GAAGA	3 cut(s)	127, 146, 343
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	1 cut(s)	305
MnlI	CCTC	4 cut(s)	25, 137, 309, 318
MseI	TTAA	2 cut(s)	63, 257
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	77
MvnI	CGCG	2 cut(s)	20, 284
MwoI	GCNNNNNNNGC	2 cut(s)	48, 325
NdeII	GATC	2 cut(s)	73, 199
NlaIII	CATG	2 cut(s)	70, 161
NruI	TCGCGA	1 cut(s)	284
NspI	RCATGY	1 cut(s)	70
PciI	ACATGT	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	33, 121
PkrI	GCNGC	2 cut(s)	82, 321
PscI	ACATGT	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	25, 229
PsuI	RGATCY	1 cut(s)	199
RruI	TCGCGA	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	63, 257
SatI	GCNGC	2 cut(s)	81, 320
Sau3AI	GATC	2 cut(s)	73, 199
Sau96I	GGNCC	2 cut(s)	25, 229
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	1 cut(s)	88
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	4 cut(s)	18, 80, 322, 328
TasI	AATT	1 cut(s)	305
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	33, 121
Tru1I	TTAA	2 cut(s)	63, 257
Tru9I	TTAA	2 cut(s)	63, 257
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.