FvH4_6g34180

DNA-directed RNA polymerase I subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
26977929 .. 26981656
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34180.t1

Sequence Viewer

Length: 1311 bp
ATGGATTCAGACACAGAAAAAACCAGGTCCCAAATGACGGCAACCAAATCAGAGCCATCAACACCATCGAAAAAGCACAAGAAGAGGAAGAGGGTCGCAGCAGAAGCCGACCCGGAGAAGCCCCAACAAGTCCAAGCCACCATCAGAGTCATCCCGGGAAACCCAGAGAGGATCCCACCTCTGGTGGGCTATTTCCCATCTGGGTTTGACCCGACCCAGAACCCAGACCCGGATTCAACCAAAGTTGGAGTCTTTAGGCACAAGGAGAGAGGTGGGACTAGGCTTCAGGTTGTGGTGACCCCAAACAAGGAGCCTAAGGTTGATTTTGTTGGGACTAGCTATGCTGGTGAGGCTCAGGCTGGGGAGCTCTGCAGTTATGGACTTGGGATTCTTGATAAGGCCACACAGACATTGAAGATTGTGCCTATTGCTAGCAACAAGATATTTAGATTGGAGGCAAAGATTCAAGGCCTTGACTCTGCTGGTAAGGAGCCTGCAGGTTCAGGTATTGGAGAACTTTCTACACTGGAGAAGGCAAAAAGACGTAATGAACTTCATAATCTTTACGGAACAAAGAAGTCTATAAGACAGAATAAAAAAATGCAAACCTTGAAGCAAGAAGATGATCCTGATTCTCAAAATGATCTGGATGCAATCAAACAAGGTATGATAGACAGGGAGGATACTGAAGCTTCTGAAGGCCATAAAGATCGCAATACCCCACCATTTAATGCTTCTGCCACCACTCCCCATGAGGCTTATCCACTGGATAAGATCATCACCACAGAAGAGTGGAAATTCCTCCAAGATATTTATAAGCTTTCGGAAGGTGGAGCAGAAATTTCACAGGTTTCTTTTCCAGCATTTGTATGCAACCGGGTCCATAAACTGCAGCTGATTGAGGATGAAGACAAGAGGAATAAGCTGTCTTGTATTTTCTCATATATTACGCATCTTGTAAAGTTCAAAGATCTGCATTCCATGGATGGGTTTTCCTCGGCAAAGGGACACAGATTCCCAAGCATGATAAAGGATAAATTTTCGACCATGTTTGATGCAGTGTCAAAGAGGCTATCAACTGAGAAAAATAATCTTCTCATTAGTTATGTCTTGGTGCTCACACTTTTTGCGGATGAATTCCAAACAAGTATGACAGACATAGCAAAGGATCTGAGAATGAGTAATGCAACTTTAAGGACGCATTATGAGACCTTGGGTTGCAAGGTGTCTAAGAAGAACGATGTATCAACAGTCACCCTTCCTGTGCCCCTCCAGTTTCCAACAGTGAGGCGCAAGCGACGCAATAGATGA

Protein Analysis

437

Amino Acids

48.9

Weight (kDa)

9.27

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_I_A49 PF06870 77 - 427 2.9e-51 A49-like RNA polymerase I associated factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 816
Acc36I ACCTGC 1 cut(s) 488
AciI CCGC 1 cut(s) 1130
AclWI GGATC 4 cut(s) 166, 179, 620, 1176
AcsI RAATTY 4 cut(s) 797, 840, 1037, 1136
AcuI CTGAAG 3 cut(s) 269, 708, 717
AfiI CCNNNNNNNGG 6 cut(s) 37, 181, 185, 229, 307, 987
AgsI TTSAA 5 cut(s) 237, 415, 467, 613, 967
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 6 cut(s) 339, 367, 692, 820, 895, 925
AluI AGCT 6 cut(s) 339, 367, 692, 820, 895, 925
Alw21I GWGCWC 2 cut(s) 369, 1119
Alw26I GTCTC 1 cut(s) 1202
AlwI GGATC 4 cut(s) 166, 179, 620, 1176
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 3 cut(s) 399, 469, 700
ApeKI GCWGC 2 cut(s) 98, 892
ApoI RAATTY 4 cut(s) 797, 840, 1037, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AspLEI GCGC 1 cut(s) 1293
AspS9I GGNCC 2 cut(s) 27, 880
AsuC2I CCSGG 5 cut(s) 113, 155, 156, 230, 878
AsuHPI GGTGA 4 cut(s) 307, 359, 772, 1246
AsuNHI GCTAGC 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 2 cut(s) 27, 880
AxyI CCTNAGG 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 1269
BamHI GGATCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 915
Bbv12I GWGCWC 2 cut(s) 369, 1119
BbvI GCAGC 2 cut(s) 110, 904
BccI CCATC 5 cut(s) 64, 73, 149, 205, 980
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 1 cut(s) 676
BcnI CCSGG 5 cut(s) 113, 155, 156, 230, 878
BcoDI GTCTC 1 cut(s) 1202
BfaI CTAG 3 cut(s) 279, 336, 432
BfmI CTRYAG 3 cut(s) 370, 495, 890
BfuAI ACCTGC 1 cut(s) 488
BfuI GTATCC 1 cut(s) 676
BglII AGATCT 1 cut(s) 970
BisI GCNGC 2 cut(s) 99, 893
BlsI GCNGC 2 cut(s) 100, 894
Bme1390I CCNGG 6 cut(s) 25, 113, 155, 156, 230, 878
Bme18I GGWCC 2 cut(s) 27, 880
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 27, 880
BmiI GGNNCC 5 cut(s) 29, 173, 312, 492, 881
BmrFI CCNGG 6 cut(s) 25, 113, 155, 156, 230, 878
BmsI GCATC 3 cut(s) 640, 961, 1045
BmtI GCTAGC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 915
BpmI CTGGAG 2 cut(s) 548, 1256
Bpu10I CCTNAGC 1 cut(s) 354
BpuMI CCSGG 5 cut(s) 113, 155, 156, 230, 878
BsaI GGTCTC 1 cut(s) 1202
BsaJI CCNNGG 4 cut(s) 154, 981, 996, 1212
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 181, 185, 229, 307, 987
Bse1I ACTGG 3 cut(s) 531, 771, 1273
Bse21I CCTNAGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 4 cut(s) 154, 981, 996, 1212
BseGI GGATG 5 cut(s) 150, 655, 910, 991, 1138
BseLI CCNNNNNNNGG 6 cut(s) 37, 181, 185, 229, 307, 987
BseMII CTCAG 3 cut(s) 368, 1071, 1163
BseNI ACTGG 3 cut(s) 531, 771, 1273
BseSI GKGCMC 1 cut(s) 1269
BseXI GCAGC 2 cut(s) 110, 904
BseYI CCCAGC 1 cut(s) 359
BshFI GGCC 3 cut(s) 401, 471, 702
BsiHKAI GWGCWC 2 cut(s) 369, 1119
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 4 cut(s) 113, 155, 230, 877
BslFI GGGAC 4 cut(s) 13, 289, 346, 1020
BslI CCNNNNNNNGG 6 cut(s) 37, 181, 185, 229, 307, 987
BsmAI GTCTC 1 cut(s) 1202
BsmFI GGGAC 4 cut(s) 13, 289, 346, 1020
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 3 cut(s) 401, 471, 702
Bso31I GGTCTC 1 cut(s) 1202
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 3 cut(s) 369, 1119, 1269
Bsp143I GATC 7 cut(s) 171, 625, 643, 709, 774, 970, 1168
Bsp19I CCATGG 1 cut(s) 981
BspACI CCGC 1 cut(s) 1130
BspANI GGCC 3 cut(s) 401, 471, 702
BspCNI CTCAG 3 cut(s) 367, 1072, 1164
BspLI GGNNCC 5 cut(s) 29, 173, 312, 492, 881
BspMAI CTGCAG 3 cut(s) 374, 499, 894
BspMI ACCTGC 1 cut(s) 488
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 4 cut(s) 166, 179, 620, 1176
BspTNI GGTCTC 1 cut(s) 1202
BsrI ACTGG 3 cut(s) 531, 771, 1273
BssECI CCNNGG 4 cut(s) 154, 981, 996, 1212
BssMI GATC 7 cut(s) 171, 625, 643, 709, 774, 970, 1168
BssT1I CCWWGG 2 cut(s) 981, 1212
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 1252, 1285
Bst6I CTCTTC 3 cut(s) 77, 83, 783
BstC8I GCNNGC 3 cut(s) 433, 495, 1295
BstDEI CTNAG 5 cut(s) 315, 354, 1080, 1172, 1230
BstDSI CCRYGG 1 cut(s) 981
BstEII GGTNACC 1 cut(s) 295
BstF5I GGATG 5 cut(s) 150, 655, 910, 991, 1138
BstHHI GCGC 1 cut(s) 1293
BstKTI GATC 7 cut(s) 174, 628, 646, 712, 777, 973, 1171
BstMAI GTCTC 1 cut(s) 1202
BstMBI GATC 7 cut(s) 171, 625, 643, 709, 774, 970, 1168
BstMWI GCNNNNNNNGC 3 cut(s) 104, 350, 1299
BstNI CCWGG 1 cut(s) 25
BstPI GGTNACC 1 cut(s) 295
BstSCI CCNGG 6 cut(s) 23, 111, 153, 154, 228, 876
BstSFI CTRYAG 3 cut(s) 370, 495, 890
BstSLI GKGCMC 1 cut(s) 1269
BstV1I GCAGC 2 cut(s) 110, 904
BstV2I GAAGAC 1 cut(s) 915
BstX2I RGATCY 3 cut(s) 171, 970, 1168
BstYI RGATCY 3 cut(s) 171, 970, 1168
Bsu36I CCTNAGG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 3 cut(s) 401, 471, 702
BtgI CCRYGG 1 cut(s) 981
BtsCI GGATG 5 cut(s) 150, 655, 910, 991, 1138
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 4 cut(s) 524, 764, 1065, 1290
BveI ACCTGC 1 cut(s) 488
Cac8I GCNNGC 3 cut(s) 433, 495, 1295
CfoI GCGC 1 cut(s) 1293
Cfr13I GGNCC 2 cut(s) 27, 880
Cfr9I CCCGGG 1 cut(s) 154
CseI GACGC 1 cut(s) 1207
CsiI ACCWGGT 1 cut(s) 23
CviAII CATG 4 cut(s) 752, 982, 1024, 1048
DdeI CTNAG 5 cut(s) 315, 354, 1080, 1172, 1230
DpnI GATC 7 cut(s) 173, 627, 645, 711, 776, 972, 1170
DpnII GATC 7 cut(s) 171, 625, 643, 709, 774, 970, 1168
Eam1104I CTCTTC 3 cut(s) 77, 83, 783
EarI CTCTTC 3 cut(s) 77, 83, 783
Ecl136II GAGCTC 1 cut(s) 367
Eco130I CCWWGG 2 cut(s) 981, 1212
Eco147I AGGCCT 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 1202
Eco47I GGWCC 2 cut(s) 27, 880
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 3 cut(s) 269, 708, 717
Eco81I CCTNAGG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 27
EcoO65I GGTNACC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 1136
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 2 cut(s) 981, 1212
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 981, 1212
FaeI CATG 4 cut(s) 755, 985, 1027, 1051
FaqI GGGAC 4 cut(s) 13, 289, 346, 1020
FatI CATG 4 cut(s) 751, 981, 1023, 1047
Fnu4HI GCNGC 2 cut(s) 99, 893
FokI GGATG 5 cut(s) 137, 662, 917, 998, 1145
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 99, 893
FspBI CTAG 3 cut(s) 279, 336, 432
GlaI GCGC 1 cut(s) 1292
GluI GCNGC 2 cut(s) 99, 893
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 2 cut(s) 548, 1256
HaeIII GGCC 3 cut(s) 401, 471, 702
HapII CCGG 4 cut(s) 113, 155, 230, 877
HgaI GACGC 1 cut(s) 1207
HhaI GCGC 1 cut(s) 1293
Hin1II CATG 4 cut(s) 755, 985, 1027, 1051
Hin6I GCGC 1 cut(s) 1291
HinP1I GCGC 1 cut(s) 1291
HindIII AAGCTT 2 cut(s) 690, 818
HinfI GANTC 9 cut(s) 5, 147, 233, 249, 388, 463, 476, 632, 1014
HpaII CCGG 4 cut(s) 113, 155, 230, 877
HphI GGTGA 4 cut(s) 307, 359, 772, 1246
Hpy188I TCNGA 6 cut(s) 10, 52, 146, 697, 826, 1173
Hpy188III TCNNGA 3 cut(s) 392, 629, 647
Hpy99I CGWCG 1 cut(s) 1302
HpyAV CCTTC 4 cut(s) 526, 692, 821, 1268
HpyCH4III ACNGT 2 cut(s) 1252, 1285
HpyCH4IV ACGT 1 cut(s) 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 350, 1299
HpyF3I CTNAG 5 cut(s) 315, 354, 1080, 1172, 1230
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 4 cut(s) 755, 985, 1027, 1051
HspAI GCGC 1 cut(s) 1291
Kzo9I GATC 7 cut(s) 171, 625, 643, 709, 774, 970, 1168
LmnI GCTCC 4 cut(s) 310, 364, 490, 833
Lsp1109I GCAGC 2 cut(s) 110, 904
LweI GCATC 3 cut(s) 640, 961, 1045
MabI ACCWGGT 1 cut(s) 23
MaeI CTAG 3 cut(s) 279, 336, 432
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 295, 1252
MalI GATC 7 cut(s) 173, 627, 645, 711, 776, 972, 1170
MboI GATC 7 cut(s) 171, 625, 643, 709, 774, 970, 1168
MboII GAAGA 8 cut(s) 94, 100, 427, 632, 800, 920, 1085, 1246
MflI RGATCY 3 cut(s) 171, 970, 1168
MhlI GDGCHC 3 cut(s) 369, 1119, 1269
MluCI AATT 4 cut(s) 797, 840, 1037, 1136
MlyI GAGTC 3 cut(s) 156, 258, 470
MmeI TCCRAC 2 cut(s) 226, 1304
MseI TTAA 2 cut(s) 729, 1193
MslI CAYNNNNRTG 1 cut(s) 868
MspA1I CMGCKG 1 cut(s) 895
MspI CCGG 4 cut(s) 113, 155, 230, 877
MspR9I CCNGG 6 cut(s) 25, 113, 155, 156, 230, 878
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 3 cut(s) 104, 350, 1299
NciI CCSGG 5 cut(s) 113, 155, 156, 230, 878
NcoI CCATGG 1 cut(s) 981
NdeII GATC 7 cut(s) 171, 625, 643, 709, 774, 970, 1168
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 4 cut(s) 755, 985, 1027, 1051
NlaIV GGNNCC 5 cut(s) 29, 173, 312, 492, 881
NmeAIII GCCGAG 1 cut(s) 977
NmuCI GTSAC 2 cut(s) 295, 1252
PceI AGGCCT 1 cut(s) 471
PctI GAATGC 1 cut(s) 976
PfeI GAWTC 6 cut(s) 5, 233, 388, 463, 632, 1014
PkrI GCNGC 2 cut(s) 100, 894
PleI GAGTC 3 cut(s) 155, 257, 470
PpsI GAGTC 3 cut(s) 155, 257, 470
PpuMI RGGWCCY 1 cut(s) 27
PsiI TTATAA 1 cut(s) 816
Psp124BI GAGCTC 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 5 cut(s) 29, 173, 312, 492, 881
PspPI GGNCC 2 cut(s) 27, 880
PspPPI RGGWCCY 1 cut(s) 27
PstI CTGCAG 3 cut(s) 374, 499, 894
PsuI RGATCY 3 cut(s) 171, 970, 1168
PvuII CAGCTG 1 cut(s) 895
RseI CAYNNNNRTG 1 cut(s) 868
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 729, 1193
SatI GCNGC 2 cut(s) 99, 893
Sau3AI GATC 7 cut(s) 171, 625, 643, 709, 774, 970, 1168
Sau96I GGNCC 2 cut(s) 27, 880
SbfI CCTGCAGG 1 cut(s) 499
SchI GAGTC 3 cut(s) 156, 258, 470
ScrFI CCNGG 6 cut(s) 25, 113, 155, 156, 230, 878
SdaI CCTGCAGG 1 cut(s) 499
SduI GDGCHC 3 cut(s) 369, 1119, 1269
SexAI ACCWGGT 1 cut(s) 23
SfaNI GCATC 3 cut(s) 640, 961, 1045
SfcI CTRYAG 3 cut(s) 370, 495, 890
SinI GGWCC 2 cut(s) 27, 880
SmaI CCCGGG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 868
Sse8387I CCTGCAGG 1 cut(s) 499
Sse9I AATT 4 cut(s) 797, 840, 1037, 1136
SseBI AGGCCT 1 cut(s) 471
SsiI CCGC 1 cut(s) 1130
SspMI CTAG 3 cut(s) 279, 336, 432
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 471
StyD4I CCNGG 6 cut(s) 23, 111, 153, 154, 228, 876
StyI CCWWGG 2 cut(s) 981, 1212
TaaI ACNGT 2 cut(s) 1252, 1285
TaiI ACGT 1 cut(s) 547
TaqI TCGA 2 cut(s) 68, 1043
TasI AATT 4 cut(s) 797, 840, 1037, 1136
TfiI GAWTC 6 cut(s) 5, 233, 388, 463, 632, 1014
Tru1I TTAA 2 cut(s) 729, 1193
Tru9I TTAA 2 cut(s) 729, 1193
TscAI CASTG 4 cut(s) 531, 771, 1065, 1290
TseFI GTSAC 2 cut(s) 295, 1252
TseI GCWGC 2 cut(s) 98, 892
Tsp45I GTSAC 2 cut(s) 295, 1252
TspDTI ATGAA 4 cut(s) 545, 564, 921, 1149
TspGWI ACGGA 1 cut(s) 582
TspMI CCCGGG 1 cut(s) 154
TspRI CASTG 4 cut(s) 531, 771, 1065, 1290
VpaK11BI GGWCC 2 cut(s) 27, 880
XapI RAATTY 4 cut(s) 797, 840, 1037, 1136
XmaI CCCGGG 1 cut(s) 154
XspI CTAG 3 cut(s) 279, 336, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.