Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002900

Physical Location & Seq

Genomic Coordinates Reverse (-)

14518552 .. 14536539

Gene Structure 17988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3882 bp

ATGACGTCGTTTCTGGGCTTCCTGATCGCTCTCTCCTTCTTACAGCTGTTCTGCTTTGGCCCTTTGATTACTGCAGAGAAGACCGGTACGCCTCGTCTTCTCCCTTCTGACGTCACCTCTCCGGAAATACACTCGGAAGAGTACTGTGCGATGTATGATATATGTGGAGAACGCAGTGATGGCAAAGTGTTGAATTGCCCTTATGGTTCCCCCTCTGTCAAGCCTGATGAGCTATTTTCTGCCAAAATCCAAAGTTTGTGTCCAACAATAAGTGGAAATGTTTGTTGCACCGAGTTTCAGTTTGAGACGTTGCGAGCACAGGTTCAACAAGCAATTCCATTTCTTGTAGGCTGTCCGGCATGCTTGAGGAATTTCCTAAATCTGTTTTGTGAGCTATCTTGCTCTCCAAAGCAGAGTCTATTTATCAATGTGACTTCTATATCCGAGGTTAGTGGAAATATGACTGTGGATGGGATTGACTATTTCATATCTGACTCTTTTGGAAAAGGACTGTATGACTCGTGTAAGGATGTTAAATTTGGCACTATGAATACACGGGCCATAGAATTTATTGGTGCTGGTGCTAAAAATTTTAAAGAATGGTTTGACTTTCTTGGTGAGAAAGCACCCCCTGGTTTCCCTGGTTCACCTTATTCCATTGACTTCAAGTTAACCGTCCCTGAGTCATCTAATATGGAGCTCATGAACATGTCAGTTTACTCATGTGCTGACACTTCACTAGGCTGCTCTTGTGGTGATTGCCCTTCATCTCCTGCGTGTTCTAATTCTGAACCACCTCCGCACAAGAAAGAGCTATGCTCCATCAAAATTTTATTTGTTGAGATCAAGTGCATCGATTTTTCTGTTGCCATCATGTATATTCTCTTCGTTTCTGCATTCTTTGGTTGGGGCTTATTTTATGGGAAAAGAGAAAGGAGGAGAACTGGATCTACCAAGGAACCATTGTTGAGTGCCATTGATGATGATGATGATATCAACCCTGTTAACTTACAAAAGGATGAAAGTATTTCCATAAAGGGGCATGAGGTGGATCCTCTAGTTACTGAAGAGGTCGAACTATCTCTTATTCAGGAATATATGTCCAGGTTTTTCAGGAGTTATGGAATCTGGGTTTCTAGAAATCCCACTCTTGTGCTCTTTTCCTCGGTGGGGATTGTTCTTATACTCTGTATAGGTCTAGTTCGTTTCCAGGTGGAGACACGGCCAGAAAAGCTGTGGGTAGGTCCTGGTAGCAAGGCAGCGGAAGAGAAACAATTTTTCGACAGACATCTTGCCCCCTTCTACAGAATTGAGCAGCTCATTATAGCGACTATCCCAGATTCAGAGAATGGCAAGTCACCCAGTATTGTCACAGACGAAAATATTCAATTGCTTTTCGACATGCAAGACAAGGTTGACAGAATTCGTGCTAATTATTCTGGTTCGATGGTAGCTCTAACTGAAATTTGCTTGAAGCCTATTGGCCAAGATTGTGCCACTCAAAGCATTTTGCAGTATTTTAAAATGAACCCGGAAAACTTTGACATGTATGGAGGAGTTGTACATGCTGAGTATTGCTTTCAGCATTATTCTTCTGCAGAAACATGTTTAAGTGCCTTTCAGGCTCCTCTTGATCCAAGCACTGCCTTGGGAGGATTCTCTGGGAACAACTATTCAGAGGCTTCGGCATTTGTAGTCACGTACCCAGTTAATAATGCAGTTGACGATGTAGGAAATGAAAATGGGAAAGCATTGGCTTGGGAGAAGGCTTTCATTCAGTTATCAAAGGAAGAACTGCTGCCAATGGTGTTGTCTCGGAATCTGAGCCTCTCGTTTTCAGCGGAAAGCTCAATTGAGGAAGAGTTAAAAAGAGAAAGTACCGCAGATGTTATAACCATAATAGTAAGCTATCTGGTAATGTTCATCTATATATCTCTGACATTGGGAGATGCACCTCAGATATCTTCTTTTTACCTCTCTTCCAAGGTCCTGCTTGGTTTGTCAGGAGTATTGCTTGTAATGGTTTCTGTCCTTGGATCTGTTGGATTTTTCAGTGCTTTGGGAGTTAAATCTACATTAATCATAATGGAAGTCATTCCTTTTCTTGTCCTGGCTGTTGGTGTAGATAACATGTGTATTTTGGTACATGCCGTCAAACGGCAATCACCGGAGTGGCCTTTAGAAAGACGAATAAGTAATGCACTGGTTGAAGTTGGCCCATCCATAACGCTGGCTAGTTTGTCTGAGGTTTTGGCTTTTGCAGTGGGTAGCTTCATTCCTATGCCTGCGTGCCGAGTGTTCTCCATGTTTGCAGCCCTTGCTGTATTGCTGGACTTCTTTCTGCAAGTTACTGCATTTGTTGCATTGATATACTTTGACTTTTTGAGAGCTGCGGATGGCAGGGTTGATTGTTTTCCATGCATAAAAGTATCATCTTCCTCTGTGGAATCCACTGAAGGAATCAATCAGGGAAGCACTGGATTGTTGGCTCGCTATATGAAGGAAGTGCATGCACGCATTCTTGAGTCATGGGTGGTTAAGATGATTCTCATTGCCATCTTTATTGGCTTTACCTTGGCAAGCATTGCATTTTGTTCTAGGATTGAAACAGGTTTGGAGCAGCAGATTGTCCTTCCCCGGGACTCTTACCTTCAGGGGTATTTCAATAGTATCTCAGAGTATCTCAGGGTTGGACCACCATTATACTTTGTTGTTAAGGATTACAACTACAGCTCGGAATCAAGACATACAAACCAGTTATGTTCCATTAGCCAATGTGAATCGAACTCTCTTTTGAATGAGATATCAAGAGCTTCTTTAACACCAGAATCAAGCTACATTGCCAAGCCGGCTGCCTCTTGGCTTGATGATTTTCTTGTATGGGTATCCCCCGAGGCTTTTGGTTGCTGTCGGAAATTTTTAAATGCTTCCTATTGTCCACCTGATGACCAGCCGCCTTGCTGTTCACCGGATGATGGACCTTGTGGCCTTGGTGGAGTCTGCAAAGATTGTACAACTTGCTTTCGCCACTCGGATTTGGTTGATGATCGTCCATCTACATCACAATTTAGGGAGAAGCTTCCTTGGTTCCTCAATGCACTGCCATCCGCTGATTGCGCAAAAGGTGGCCATGGTGCTTACACTAATAGTGTGGATCTCAATGGTTATGGAAATGGCATTATACGAGCATCTGAGTTTCGCACCTATCACACGCCACTTAACAAACAAGGTGATTACGTAAATTCCTTGAGAGCAGCACGGGAGTTCAGCTCAAGAATGTCTGATTCCTTAAAGATGGATATCTTTCCATACTCAGTGTTCTACATCTTCTTTGAGCAATATCTCGATATATGGAGGATAGCTCTGATCAACATTGCTATAGCTCTTGGTGCAATCTTCATTGTCTGTCTGCTTATCACTTCCAGCTTATGGAGTTCAGCAATTCTTATACTTGTCTTGGCAATGATTGTGGTGGACCTAATGGGGGTGATGGCCATTTTGGATATCCAACTAAATGCGGTTTCGGTAGTAAATCTCATAATGTCGATTGGAATTGCTGTCGAGTTCTGTGTGCATATAACACATGCTTACTTGGTGAGCCATGGGGACCGAAATGAACGAGCAAAGAAAGCTCTAACTAAAGTCGGACCTTCTGTGTTCAGTGGAATCACACTTACAAAGCTAGTTGGAGTGATTGTCCTTTGCTTCTCAAGATCAGAAATTTTTGTGGTTTATTATTTCCAAATGTACCTGGCGTTGGTTCTTATTGGTTTCTTGCATGGGCTTGTATTTTTACCGGTGGTGTTGAGCATGTTTGGTCCACTGAAGAGGCTTACAAATATTGAGATTCAAGAAGTTGAATCTTCATCAAACTTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

1294

Amino Acids

142.8

Weight (kDa)

5.02

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPC1_MLD	PF22314	132 - 323	1e-35	NPC1, middle luminal domain
Patched	PF02460	346 - 498	2.8e-32	Patched SSD
Sterol-sensing	PF12349	368 - 517	3.5e-46	Sterol-sensing domain of SREBP cleavage-activation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38350 AT4G38350
fragaria_vesca	FvH4_2g16650 FvH4_2g16650 FvH4_2g16650 FvH4_2g16650
malus_domestica	MD10G1139800.v1.1
prunus_persica	Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280781
rosa_laevigata	RLG00000013029
rosa_multiflora	Rmu_sc0001197.1_g000010
rosa_roxburghii	Rroxscaffold_7G00187670
rosa_rugosa	Rorug06G0134400
rosa_samantha	Rh6AG247100 Rh6BG249400 Rh6CG250500 Rh6DG241900
rosa_wichuraiana	Rw6G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1892
AatII	GACGTC	2 cut(s)	8, 114
Acc16I	TGCGCA	1 cut(s)	3118
AccB7I	CCANNNNNTGG	1 cut(s)	3429
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	8 cut(s)	800, 1262, 1841, 1881, 2393, 2954, 3108, 3518
AclWI	GGATC	6 cut(s)	955, 1046, 1059, 1628, 2044, 3162
AcoI	YGGCCR	4 cut(s)	1223, 1483, 3127, 3492
AcuI	CTGAAG	4 cut(s)	1086, 2475, 2636, 3845
AcyI	GRCGYC	2 cut(s)	5, 111
AfaI	GTAC	8 cut(s)	88, 143, 1563, 1703, 1879, 2145, 3013, 3749
AfiI	CCNNNNNNNGG	8 cut(s)	1038, 1170, 2157, 2638, 2975, 3429, 3484, 3757
AflIII	ACRYGT	4 cut(s)	708, 1545, 1604, 2130
AgeI	ACCGGT	2 cut(s)	83, 3796
AjnI	CCWGG	7 cut(s)	631, 640, 1103, 1209, 1246, 2109, 3750
AleI	CACNNNNGTG	2 cut(s)	1151, 2170
Alw21I	GWGCWC	3 cut(s)	319, 702, 1158
Alw26I	GTCTC	3 cut(s)	299, 1211, 1818
AlwI	GGATC	6 cut(s)	955, 1046, 1059, 1628, 2044, 3162
Ama87I	CYCGRG	2 cut(s)	2637, 2891
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	9 cut(s)	58, 558, 1223, 1483, 2174, 2215, 2986, 3127, 3492
ApeKI	GCWGC	9 cut(s)	744, 1259, 1315, 1798, 2312, 2390, 2620, 2852, 3254
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AseI	ATTAAT	1 cut(s)	2078
AsiGI	ACCGGT	2 cut(s)	83, 3796
Asp700I	GAANNNNTTC	3 cut(s)	1383, 1769, 2094
AspLEI	GCGC	1 cut(s)	3119
AsuC2I	CCSGG	3 cut(s)	1532, 2638, 2639
AvaI	CYCGRG	2 cut(s)	2637, 2891
AvaII	GGWCC	8 cut(s)	1244, 1987, 2693, 2978, 3475, 3607, 3647, 3818
BalI	TGGCCA	3 cut(s)	1485, 3129, 3494
BamHI	GGATCC	1 cut(s)	1051
BanII	GRGCYC	1 cut(s)	702
BarI	GAAGNNNNNNTAC	2 cut(s)	869, 901
BauI	CACGAG	1 cut(s)	520
BbsI	GAAGAC	2 cut(s)	86, 89
Bbv12I	GWGCWC	3 cut(s)	319, 702, 1158
BbvI	GCAGC	9 cut(s)	731, 1271, 1327, 1785, 2324, 2377, 2632, 2839, 3266
BceAI	ACGGC	3 cut(s)	1238, 2135, 2174
BciT130I	CCWGG	7 cut(s)	633, 642, 1105, 1211, 1248, 2111, 3752
BciVI	GTATCC	1 cut(s)	2896
BclI	TGATCA	1 cut(s)	3366
BcnI	CCSGG	3 cut(s)	1532, 2638, 2639
BcoDI	GTCTC	3 cut(s)	299, 1211, 1818
BfaI	CTAG	7 cut(s)	740, 1058, 1137, 1199, 2235, 2598, 3683
BfmI	CTRYAG	5 cut(s)	72, 1303, 1596, 2728, 3378
BfuI	GTATCC	1 cut(s)	2896
BglI	GCCNNNNNGGC	2 cut(s)	1622, 2849
BmcAI	AGTACT	1 cut(s)	143
Bme18I	GGWCC	8 cut(s)	1244, 1987, 2693, 2978, 3475, 3607, 3647, 3818
BmeT110I	CYCGRG	2 cut(s)	2637, 2891
BmiI	GGNNCC	6 cut(s)	208, 960, 1053, 1626, 3089, 3608
BmrI	ACTGGG	2 cut(s)	1356, 1700
BmsI	GCATC	3 cut(s)	861, 1939, 3197
BmuI	ACTGGG	2 cut(s)	1356, 1700
BpiI	GAAGAC	2 cut(s)	86, 89
BplI	GAGNNNNNCTC	6 cut(s)	803, 835, 3254, 3286, 3346, 3378
BpuEI	CTTGAG	5 cut(s)	385, 2543, 3256, 3268, 3694
BpuMI	CCSGG	3 cut(s)	1532, 2638, 2639
Bsa29I	ATCGAT	1 cut(s)	855
BsaAI	YACGTR	2 cut(s)	1701, 3238
BsaBI	GATNNNNATC	1 cut(s)	3299
BsaHI	GRCGYC	2 cut(s)	5, 111
BsaWI	WCCGGW	5 cut(s)	83, 121, 2167, 2968, 3796
BsaXI	ACNNNNNCTCC	4 cut(s)	1545, 1575, 3681, 3711
Bsc4I	CCNNNNNNNGG	8 cut(s)	1038, 1170, 2157, 2638, 2975, 3429, 3484, 3757
Bse118I	RCCGGY	3 cut(s)	83, 2848, 3796
Bse1I	ACTGG	6 cut(s)	949, 1362, 1706, 2208, 2482, 2755
Bse3DI	GCAATG	5 cut(s)	2550, 2583, 2838, 3372, 3468
Bse8I	GATNNNNATC	1 cut(s)	3299
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	7 cut(s)	633, 642, 1105, 1211, 1248, 2111, 3752
BseCI	ATCGAT	1 cut(s)	855
BseGI	GGATG	7 cut(s)	475, 535, 1024, 2219, 2401, 2977, 3104
BseJI	GATNNNNATC	1 cut(s)	3299
BseLI	CCNNNNNNNGG	8 cut(s)	1038, 1170, 2157, 2638, 2975, 3429, 3484, 3757
BseMI	GCAATG	5 cut(s)	2550, 2583, 2838, 3372, 3468
BseMII	CTCAG	9 cut(s)	672, 1560, 1814, 1970, 2235, 2688, 2698, 3183, 3327
BseNI	ACTGG	6 cut(s)	949, 1362, 1706, 2208, 2482, 2755
BseRI	GAGGAG	3 cut(s)	952, 1569, 1617
BseXI	GCAGC	9 cut(s)	731, 1271, 1327, 1785, 2324, 2377, 2632, 2839, 3266
BshFI	GGCC	9 cut(s)	60, 560, 1225, 1485, 2176, 2217, 2988, 3129, 3494
BshTI	ACCGGT	2 cut(s)	83, 3796
BshVI	ATCGAT	1 cut(s)	855
BsiHKAI	GWGCWC	3 cut(s)	319, 702, 1158
BsiHKCI	CYCGRG	2 cut(s)	2637, 2891
BsiSI	CCGG	9 cut(s)	84, 122, 356, 1532, 2168, 2638, 2849, 2969, 3797
BslFI	GGGAC	3 cut(s)	662, 2654, 3620
BslI	CCNNNNNNNGG	8 cut(s)	1038, 1170, 2157, 2638, 2975, 3429, 3484, 3757
BsmAI	GTCTC	3 cut(s)	299, 1211, 1818
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	3 cut(s)	662, 2654, 3620
BsmI	GAATGC	2 cut(s)	896, 2517
BsnI	GGCC	9 cut(s)	60, 560, 1225, 1485, 2176, 2217, 2988, 3129, 3494
BsoBI	CYCGRG	2 cut(s)	2637, 2891
Bsp1286I	GDGCHC	3 cut(s)	319, 702, 1158
Bsp13I	TCCGGA	1 cut(s)	121
Bsp1407I	TGTACA	2 cut(s)	1561, 3011
Bsp19I	CCATGG	2 cut(s)	3130, 3601
BspACI	CCGC	8 cut(s)	800, 1262, 1841, 1881, 2393, 2954, 3108, 3518
BspANI	GGCC	9 cut(s)	60, 560, 1225, 1485, 2176, 2217, 2988, 3129, 3494
BspCNI	CTCAG	9 cut(s)	673, 1561, 1815, 1969, 2236, 2687, 2697, 3184, 3326
BspDI	ATCGAT	1 cut(s)	855
BspEI	TCCGGA	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	6 cut(s)	208, 960, 1053, 1626, 3089, 3608
BspMAI	CTGCAG	2 cut(s)	76, 1600
BspPI	GGATC	6 cut(s)	955, 1046, 1059, 1628, 2044, 3162
BsrDI	GCAATG	5 cut(s)	2550, 2583, 2838, 3372, 3468
BsrFI	RCCGGY	3 cut(s)	83, 2848, 3796
BsrGI	TGTACA	2 cut(s)	1561, 3011
BsrI	ACTGG	6 cut(s)	949, 1362, 1706, 2208, 2482, 2755
BssAI	RCCGGY	3 cut(s)	83, 2848, 3796
BssNI	GRCGYC	2 cut(s)	5, 111
BssSI	CACGAG	1 cut(s)	520
BssT1I	CCWWGG	9 cut(s)	954, 1647, 1983, 2032, 2574, 2989, 3083, 3130, 3601
Bst2BI	CACGAG	1 cut(s)	520
Bst2UI	CCWGG	7 cut(s)	633, 642, 1105, 1211, 1248, 2111, 3752
Bst4CI	ACNGT	4 cut(s)	146, 466, 513, 676
Bst6I	CTCTTC	7 cut(s)	132, 890, 1062, 1260, 1854, 1984, 3821
BstACI	GRCGYC	2 cut(s)	5, 111
BstAPI	GCANNNNNTGC	3 cut(s)	2318, 2360, 2585
BstAUI	TGTACA	2 cut(s)	1561, 3011
BstBAI	YACGTR	2 cut(s)	1701, 3238
BstDEI	CTNAG	9 cut(s)	681, 1569, 1823, 1956, 2244, 2674, 2684, 3192, 3313
BstDSI	CCRYGG	2 cut(s)	3130, 3601
BstF5I	GGATG	7 cut(s)	475, 535, 1024, 2219, 2401, 2977, 3104
BstHHI	GCGC	1 cut(s)	3119
BstMAI	GTCTC	3 cut(s)	299, 1211, 1818
BstNI	CCWGG	7 cut(s)	633, 642, 1105, 1211, 1248, 2111, 3752
BstSFI	CTRYAG	5 cut(s)	72, 1303, 1596, 2728, 3378
BstSNI	TACGTA	1 cut(s)	3238
BstV1I	GCAGC	9 cut(s)	731, 1271, 1327, 1785, 2324, 2377, 2632, 2839, 3266
BstV2I	GAAGAC	2 cut(s)	86, 89
BstX2I	RGATCY	4 cut(s)	947, 1051, 2036, 3154
BstXI	CCANNNNNNTGG	1 cut(s)	2230
BstYI	RGATCY	4 cut(s)	947, 1051, 2036, 3154
Bsu15I	ATCGAT	1 cut(s)	855
BsuI	GTATCC	1 cut(s)	2896
BsuRI	GGCC	9 cut(s)	60, 560, 1225, 1485, 2176, 2217, 2988, 3129, 3494
BsuTUI	ATCGAT	1 cut(s)	855
BtgI	CCRYGG	2 cut(s)	3130, 3601
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	7 cut(s)	475, 535, 1024, 2219, 2401, 2977, 3104
BtsI	GCAGTG	4 cut(s)	181, 1641, 2268, 3098
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	3119
Cfr10I	RCCGGY	3 cut(s)	83, 2848, 3796
Cfr9I	CCCGGG	1 cut(s)	2637
ClaI	ATCGAT	1 cut(s)	855
Csp6I	GTAC	8 cut(s)	87, 142, 1562, 1702, 1878, 2144, 3012, 3748
CspAI	ACCGGT	2 cut(s)	83, 3796
CspCI	CAANNNNNGTGG	2 cut(s)	3450, 3485
CviQI	GTAC	8 cut(s)	87, 142, 1562, 1702, 1878, 2144, 3012, 3748
DdeI	CTNAG	9 cut(s)	681, 1569, 1823, 1956, 2244, 2674, 2684, 3192, 3313
DraI	TTTAAA	3 cut(s)	595, 1522, 2922
EaeI	YGGCCR	4 cut(s)	1223, 1483, 3127, 3492
Eam1104I	CTCTTC	7 cut(s)	132, 890, 1062, 1260, 1854, 1984, 3821
EarI	CTCTTC	7 cut(s)	132, 890, 1062, 1260, 1854, 1984, 3821
Ecl136II	GAGCTC	1 cut(s)	700
Eco105I	TACGTA	1 cut(s)	3238
Eco130I	CCWWGG	9 cut(s)	954, 1647, 1983, 2032, 2574, 2989, 3083, 3130, 3601
Eco24I	GRGCYC	1 cut(s)	702
Eco32I	GATATC	5 cut(s)	994, 1962, 2805, 3301, 3505
Eco47I	GGWCC	8 cut(s)	1244, 1987, 2693, 2978, 3475, 3607, 3647, 3818
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	4 cut(s)	1086, 2475, 2636, 3845
Eco88I	CYCGRG	2 cut(s)	2637, 2891
EcoICRI	GAGCTC	1 cut(s)	700
EcoO109I	RGGNCCY	2 cut(s)	1244, 1987
EcoRI	GAATTC	1 cut(s)	1422
EcoRII	CCWGG	7 cut(s)	631, 640, 1103, 1209, 1246, 2109, 3750
EcoRV	GATATC	5 cut(s)	994, 1962, 2805, 3301, 3505
EcoT14I	CCWWGG	9 cut(s)	954, 1647, 1983, 2032, 2574, 2989, 3083, 3130, 3601
EcoT22I	ATGCAT	1 cut(s)	2423
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	9 cut(s)	954, 1647, 1983, 2032, 2574, 2989, 3083, 3130, 3601
Esp3I	CGTCTC	1 cut(s)	299
FalI	AAGNNNNNCTT	2 cut(s)	2800, 2832
FaqI	GGGAC	3 cut(s)	662, 2654, 3620
FbaI	TGATCA	1 cut(s)	3366
FokI	GGATG	7 cut(s)	482, 542, 1031, 2206, 2408, 2984, 3091
FriOI	GRGCYC	1 cut(s)	702
FspBI	CTAG	7 cut(s)	740, 1058, 1137, 1199, 2235, 2598, 3683
FspI	TGCGCA	1 cut(s)	3118
GlaI	GCGC	1 cut(s)	3118
HaeIII	GGCC	9 cut(s)	60, 560, 1225, 1485, 2176, 2217, 2988, 3129, 3494
HapII	CCGG	9 cut(s)	84, 122, 356, 1532, 2168, 2638, 2849, 2969, 3797
HhaI	GCGC	1 cut(s)	3119
Hin1I	GRCGYC	2 cut(s)	5, 111
Hin6I	GCGC	1 cut(s)	3117
HinP1I	GCGC	1 cut(s)	3117
HincII	GTYRAC	4 cut(s)	672, 1006, 1417, 1723
HindII	GTYRAC	4 cut(s)	672, 1006, 1417, 1723
HindIII	AAGCTT	1 cut(s)	3077
HpaI	GTTAAC	2 cut(s)	672, 1006
HpaII	CCGG	9 cut(s)	84, 122, 356, 1532, 2168, 2638, 2849, 2969, 3797
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	4 cut(s)	146, 466, 513, 676
HpyCH4IV	ACGT	5 cut(s)	5, 111, 308, 1700, 3237
HpyF3I	CTNAG	9 cut(s)	681, 1569, 1823, 1956, 2244, 2674, 2684, 3192, 3313
HpySE526I	ACGT	5 cut(s)	5, 111, 308, 1700, 3237
Hsp92I	GRCGYC	2 cut(s)	5, 111
HspAI	GCGC	1 cut(s)	3117
Kpn2I	TCCGGA	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	2848
KroNI	GCCGGC	1 cut(s)	2850
Ksp22I	TGATCA	1 cut(s)	3366
KspAI	GTTAAC	2 cut(s)	672, 1006
LmnI	GCTCC	4 cut(s)	697, 824, 1630, 2617
Lsp1109I	GCAGC	9 cut(s)	731, 1271, 1327, 1785, 2324, 2377, 2632, 2839, 3266
LweI	GCATC	3 cut(s)	861, 1939, 3197
MaeI	CTAG	7 cut(s)	740, 1058, 1137, 1199, 2235, 2598, 3683
MaeII	ACGT	5 cut(s)	5, 111, 308, 1700, 3237
MaeIII	GTNAC	7 cut(s)	112, 430, 1060, 1356, 1369, 1696, 2347
MfeI	CAATTG	2 cut(s)	1388, 1851
MflI	RGATCY	4 cut(s)	947, 1051, 2036, 3154
MhlI	GDGCHC	3 cut(s)	319, 702, 1158
MlsI	TGGCCA	3 cut(s)	1485, 3129, 3494
MluNI	TGGCCA	3 cut(s)	1485, 3129, 3494
MlyI	GAGTC	7 cut(s)	424, 488, 512, 692, 2534, 2636, 3006
MmeI	TCCRAC	7 cut(s)	287, 2023, 2671, 2891, 3532, 3625, 3667
Mox20I	TGGCCA	3 cut(s)	1485, 3129, 3494
Mph1103I	ATGCAT	1 cut(s)	2423
MroI	TCCGGA	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	2848
MroXI	GAANNNNTTC	3 cut(s)	1383, 1769, 2094
MscI	TGGCCA	3 cut(s)	1485, 3129, 3494
MslI	CAYNNNNRTG	4 cut(s)	707, 1151, 2170, 2279
Msp20I	TGGCCA	3 cut(s)	1485, 3129, 3494
MspA1I	CMGCKG	4 cut(s)	46, 1262, 1841, 3110
MspI	CCGG	9 cut(s)	84, 122, 356, 1532, 2168, 2638, 2849, 2969, 3797
MunI	CAATTG	2 cut(s)	1388, 1851
Mva1269I	GAATGC	2 cut(s)	896, 2517
MvaI	CCWGG	7 cut(s)	633, 642, 1105, 1211, 1248, 2111, 3752
NaeI	GCCGGC	1 cut(s)	2850
NciI	CCSGG	3 cut(s)	1532, 2638, 2639
NcoI	CCATGG	2 cut(s)	3130, 3601
NgoMIV	GCCGGC	1 cut(s)	2848
NlaIV	GGNNCC	6 cut(s)	208, 960, 1053, 1626, 3089, 3608
NmeAIII	GCCGAG	1 cut(s)	2318
NmuCI	GTSAC	5 cut(s)	112, 430, 1356, 1369, 1696
NsbI	TGCGCA	1 cut(s)	3118
NsiI	ATGCAT	1 cut(s)	2423
OliI	CACNNNNGTG	2 cut(s)	1151, 2170
PaeI	GCATGC	2 cut(s)	363, 2513
PagI	TCATGA	1 cut(s)	702
PciI	ACATGT	4 cut(s)	708, 1545, 1604, 2130
PctI	GAATGC	2 cut(s)	896, 2517
PdiI	GCCGGC	1 cut(s)	2850
PdmI	GAANNNNTTC	3 cut(s)	1383, 1769, 2094
PflMI	CCANNNNNTGG	1 cut(s)	3429
PinAI	ACCGGT	2 cut(s)	83, 3796
PleI	GAGTC	7 cut(s)	423, 488, 512, 691, 2533, 2636, 3005
PpsI	GAGTC	7 cut(s)	423, 488, 512, 691, 2533, 2636, 3005
Ppu21I	YACGTR	2 cut(s)	1701, 3238
PpuMI	RGGWCCY	2 cut(s)	1244, 1987
PscI	ACATGT	4 cut(s)	708, 1545, 1604, 2130
PshBI	ATTAAT	1 cut(s)	2078
PsiI	TTATAA	1 cut(s)	1892
Psp124BI	GAGCTC	1 cut(s)	702
Psp5II	RGGWCCY	2 cut(s)	1244, 1987
Psp6I	CCWGG	7 cut(s)	631, 640, 1103, 1209, 1246, 2109, 3750
PspGI	CCWGG	7 cut(s)	631, 640, 1103, 1209, 1246, 2109, 3750
PspN4I	GGNNCC	6 cut(s)	208, 960, 1053, 1626, 3089, 3608
PspPPI	RGGWCCY	2 cut(s)	1244, 1987
PsrI	GAACNNNNNNTAC	2 cut(s)	934, 966
PstI	CTGCAG	2 cut(s)	76, 1600
PsuI	RGATCY	4 cut(s)	947, 1051, 2036, 3154
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	8 cut(s)	88, 143, 1563, 1703, 1879, 2145, 3013, 3749
RsaNI	GTAC	8 cut(s)	87, 142, 1562, 1702, 1878, 2144, 3012, 3748
RseI	CAYNNNNRTG	4 cut(s)	707, 1151, 2170, 2279
SacI	GAGCTC	1 cut(s)	702
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	7 cut(s)	424, 488, 512, 692, 2534, 2636, 3006
SduI	GDGCHC	3 cut(s)	319, 702, 1158
SfaNI	GCATC	3 cut(s)	861, 1939, 3197
SfcI	CTRYAG	5 cut(s)	72, 1303, 1596, 2728, 3378
SinI	GGWCC	8 cut(s)	1244, 1987, 2693, 2978, 3475, 3607, 3647, 3818
SmaI	CCCGGG	1 cut(s)	2639
SmiMI	CAYNNNNRTG	4 cut(s)	707, 1151, 2170, 2279
SmlI	CTYRAG	6 cut(s)	364, 2522, 3247, 3271, 3709, 3874
SmoI	CTYRAG	6 cut(s)	364, 2522, 3247, 3271, 3709, 3874
SnaBI	TACGTA	1 cut(s)	3238
SphI	GCATGC	2 cut(s)	363, 2513
SsiI	CCGC	8 cut(s)	800, 1262, 1841, 1881, 2393, 2954, 3108, 3518
SspI	AATATT	2 cut(s)	1384, 3841
SspMI	CTAG	7 cut(s)	740, 1058, 1137, 1199, 2235, 2598, 3683
SstI	GAGCTC	1 cut(s)	702
StyI	CCWWGG	9 cut(s)	954, 1647, 1983, 2032, 2574, 2989, 3083, 3130, 3601
TaaI	ACNGT	4 cut(s)	146, 466, 513, 676
TaiI	ACGT	5 cut(s)	8, 114, 311, 1703, 3240
TaqI	TCGA	9 cut(s)	855, 1074, 1281, 1398, 1445, 2783, 3345, 3545, 3561
TaqII	GACCGA	1 cut(s)	3624
TatI	WGTACW	3 cut(s)	141, 1561, 3011
TauI	GCSGC	1 cut(s)	2956
TseFI	GTSAC	5 cut(s)	112, 430, 1356, 1369, 1696
TseI	GCWGC	9 cut(s)	744, 1259, 1315, 1798, 2312, 2390, 2620, 2852, 3254
Tsp45I	GTSAC	5 cut(s)	112, 430, 1356, 1369, 1696
TspMI	CCCGGG	1 cut(s)	2637
Van91I	CCANNNNNTGG	1 cut(s)	3429
VpaK11BI	GGWCC	8 cut(s)	1244, 1987, 2693, 2978, 3475, 3607, 3647, 3818
VspI	ATTAAT	1 cut(s)	2078
XbaI	TCTAGA	1 cut(s)	1136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1233
XmaI	CCCGGG	1 cut(s)	2637
XmnI	GAANNNNTTC	3 cut(s)	1383, 1769, 2094
XspI	CTAG	7 cut(s)	740, 1058, 1137, 1199, 2235, 2598, 3683
ZraI	GACGTC	2 cut(s)	6, 112
ZrmI	AGTACT	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	2423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.