Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001197.1

Orthogroup ID

OG0002900

Physical Location & Seq

Genomic Coordinates Forward (+)

40516 .. 60899

Gene Structure 20384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001197.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4275 bp

atgatggattcggacccatcacacaccaggaacgccgccaacgctggcctgcattctctatccctatctcaaaacgatataagtgttttggaaggttttgctgatgctgggtacctctctaacccacacaaagcgaaagcgaaccaaaccaaaatgacgtcgtttctggctttcctcgctgctctttccttcttacagctgctcttctttggaccttcgttgagtgcagagaagactgtctcgcctggtcttctcacttctgacgtcacttctcggaaaacacactcggaagactactgtgcaatgtatgatatatgtggagaacgcagtgacggcaaagtcttgaattgcccttatggttccccctctgtgaagctgctcttctttggaccttcgttgagtgcagagaagactgtctcgcctggtcttctcacttctgacctgctcttctttggaccttcgttgagtgcagagaagactgtctcgcctggtcttctcacttctgacgtcacttctcggaaaacacactcggaagactactgtgcaatgtatgatatatgtggagaacgcagtgacggcaaagtcttgaattgcccttatggttccccctctgtgaagcctgacgagctattttctgccaaaatccaaagtttgtgtccaactataagtggaaatgtttgttgcactgagcttcagtttgaaacgttgcgagcacaggttcaacaagcaattccatttcttgtaggctgtccagcatgcttgaggaatttcctaaatttgttttgtgagctatcttgctctccaaagcagagtctgtttatcaatgtgacttctatctccgaggttagtggcaatatgactgtggatgggatcgactattacatatctgacacttttggaaaaggactgtacaactcgtgtaaggatgttaaatttggtactatgaacacacgggccatagaatttattggtgctggtgctaaaaattttaaagaatggtttgattttcttggtgagaaagcagcccttggtttccctggttcaccttatgccattgacttcaagttaaccgttcccgagtcatctaatatggagctcatgaacatgtcagtttattcatgtgctgacacttcactaggctgctcttgtggtgattgcccttcatctcctgcgtgttctaattctgaacctcctccacacaagaaagagcaatgctccataaaaattctatctattgagatcaaatgcattgatgtttcagtagccatcatgtatattcttttagtttttgcattctttgtttggggcttgttttatcggaaaagagaaaggaggagagctggatctactaaggaaccattgttgagtgccattgatgatgatgatatcaaccctgttaacttacaaaaggatgaaagttttgccagaaaggggcatgaggtggatcttcaagttacagaagaggtcgaactatcttttattcaggaatatatgtcaagctttttcaggagatatggaatctgggtttctagaaatcccactcttgtgctctttacctcggtggggattgttcttatactctgtataggtctagttcgtttccaggtggagacacggccagagaagctgtgggtaggtcctggcagcaaggcagcggaggagaaacaattctttgacagacatcttgctcccttctacagaattgagcagctcattatagcaactgtcccagattcaaagcatggcgagtcacccagtattgtcacagatgacaatattcaattactttttgacatacaagacaaggttgacggaattcgtgctaattattctggctcagtggtagctttaactgaaatttgcttgaagcctattggccaagattgtgccactcaaagcattttgcagtattttaaaatggaccctgaaaattttgacatctatggaggagttgtacatgccgagtattgctttcagcattattcttctgcagaaacatgtttaagtgcctttcaggctccacttgatccaagcactgccttgggagggttctctggaaacaattattctgaggcttctgcattcgtagtcacctacccagttaataatgcagttgatgatgtaggaaatgagaatggaaaggcactggcttgggagaaggcttttattcagttagcaaaggatgaactgctgccaatggtgctgtctcggaatctgactctctcattttcggccgaaagttcaattgaggaagagttaaaaagagaaagtactgcagatgttataaccataatagtaagctatctggtaatgtttctgtatatatctctgacattgggagatgcacctcaaatatcttctctttacctctcatccaaggtcctgcttggtttgtcaggagtattgcttgtaatgctttctgttcttggatctgttggatttttcagtgctgtgggagttaaatctacattaatcataatggaagtcattcctttccttgttttggctgttggtgtagataacatgtgtatattggtacatgctgtgaaacggcaatcaccggagttacctttagaaagacgaataagtaatgcactggttgaagttggtccatccataacactggctagtttgtctgaggttttggcctttgcggtgggaagcttcattcctatgccagcatgccgagtcttctccatgtttgctgctcttgctgttttgctggacttctttctgcaagttactgcatttgttgcattgatatactttgactttttgagagctgaggatggcagggttgattgttttccatgcataaaagtctcgtcatcctttgtggaatccactgaaggaatctatcatggaagaactggattgttggctcgctatatgaaggaagtgcatgcacgtattcttgattcatgggtggttaagatggttatcgttgctatctttgttggttttacctgggcaagcattgcattatgttctaggattgaaacgggtttggagcagcagattgtccttccccgggactcttacctccaggggtatttcaatagtatctcagagtatctcagggttggaccaccattatactttgttgtaaaggattacaactacagctcagaatcaagacatacaaaccagttatgctccattagccaatgtgaatcgaactctcttttgaatgagatatcaagagcttctttaacaccagaatcaagctacattgctaagccagctgcctcttggcttgatgattttcttgtatggatatcccccgaggcttttggttgctgtcggaagtttttaaatgcttcttattgtccacctgatgaccagccaccttgctgttcacctgatgatggaccttgtggccttggtggagtgtgcaaagattgtacaacttgctttcgccactcagatttgattgatgatcgtccatctacagcacaatttagagagaagcttccttggttccttaatgcactgccatccgctgattgcgcaaaaggaggccatggtgcttacactaatagtgtggatctcaatggttatggaaatggcattataagagcgtccgagtttcgcacctatcacacgccacttaacaaacaaggtgattatgtaaattcaatgagagcagcacgggagttcagctcaagaatgtctgattccttaaagatggatatctttccatactcggtgttctacatcttctttgagcaatatctggatatatggagaatagctttgatcaacattgctatagctcttggtgcaatcttccttgtctgtctgcttattacttccagcttatggagttcagcaattctcatacttgtcttggcaatgattgttgtggacctaatgggagtgatggccattttggatatccaactaaatgcggtttctgtagtaaatctcataatgtcgatcggaattgctgtagagttctgtgttcatataacacatgcttacttggtgaaccatggggacagaaaccaacgagcaaagaaagctttaactaaagttggaccttctgtgttcagtggaatcacacttacaaagctagttggagtgattgtcctttgcttctcaagatcagaaatttttgtggtttattatttccaaatgtacctggcgttggttgttattggtttcttgcatgggcttgtatttttaccggtggtgttgagcatgtttggtccactgaagaggcttacaaattttgagattcaagaagtagaatcttcatcaagctcaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

1424

Amino Acids

156.64

Weight (kDa)

5.19

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38350 AT4G38350
fragaria_vesca	FvH4_2g16650 FvH4_2g16650 FvH4_2g16650 FvH4_2g16650
malus_domestica	MD10G1139800.v1.1
prunus_persica	Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280781
rosa_laevigata	RLG00000013029
rosa_multiflora	Rmu_sc0001197.1_g000010
rosa_roxburghii	Rroxscaffold_7G00187670
rosa_rugosa	Rorug06G0134400
rosa_samantha	Rh6AG247100 Rh6BG249400 Rh6CG250500 Rh6DG241900
rosa_wichuraiana	Rw6G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2285, 3575
AasI	GACNNNNNNGTC	2 cut(s)	338, 581
AatII	GACGTC	3 cut(s)	161, 267, 510
Acc16I	TGCGCA	1 cut(s)	3511
Acc36I	ACCTGC	1 cut(s)	450
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	3822
AciI	CCGC	5 cut(s)	36, 1655, 2654, 3501, 3911
AclI	AACGTT	1 cut(s)	704
AclWI	GGATC	6 cut(s)	878, 1351, 1452, 2021, 2437, 3555
AcoI	YGGCCR	4 cut(s)	1616, 1876, 2232, 3885
AcuI	CTGAAG	3 cut(s)	677, 2868, 4238
AcyI	GRCGYC	3 cut(s)	158, 264, 507
AfaI	GTAC	8 cut(s)	113, 911, 940, 1956, 2272, 2538, 3406, 4142
AfiI	CCNNNNNNNGG	8 cut(s)	1431, 1563, 2046, 2503, 3031, 3368, 3822, 4150
AflIII	ACRYGT	3 cut(s)	1104, 1997, 2523
AgeI	ACCGGT	1 cut(s)	4189
AleI	CACNNNNGTG	1 cut(s)	1544
Alw21I	GWGCWC	3 cut(s)	715, 1098, 1551
Alw26I	GTCTC	6 cut(s)	244, 421, 487, 1604, 2211, 2827
AlwI	GGATC	6 cut(s)	878, 1351, 1452, 2021, 2437, 3555
AlwNI	CAGNNNCTG	1 cut(s)	814
Ama87I	CYCGRG	3 cut(s)	1076, 3030, 3284
AoxI	GGCC	9 cut(s)	46, 954, 1616, 1876, 2232, 2646, 3379, 3520, 3885
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AseI	ATTAAT	1 cut(s)	2471
AsiGI	ACCGGT	1 cut(s)	4189
Asp700I	GAANNNNTTC	2 cut(s)	1667, 2487
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	3512
AsuC2I	CCSGG	2 cut(s)	3031, 3032
AsuHPI	GGTGA	9 cut(s)	1025, 1035, 1163, 1743, 2083, 2550, 3351, 3635, 4000
AvaI	CYCGRG	3 cut(s)	1076, 3030, 3284
BalI	TGGCCA	2 cut(s)	1878, 3887
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	1098
BauI	CACGAG	1 cut(s)	916
BbsI	GAAGAC	9 cut(s)	239, 242, 297, 416, 419, 482, 485, 540, 2683
Bbv12I	GWGCWC	3 cut(s)	715, 1098, 1551
BbvCI	CCTCAGC	1 cut(s)	2784
BceAI	ACGGC	4 cut(s)	349, 592, 1631, 2567
BclI	TGATCA	1 cut(s)	3759
BcnI	CCSGG	2 cut(s)	3031, 3032
BcoDI	GTCTC	6 cut(s)	244, 421, 487, 1604, 2211, 2827
BfaI	CTAG	6 cut(s)	1136, 1530, 1592, 2628, 2991, 4076
BfmI	CTRYAG	8 cut(s)	1696, 1989, 2274, 3121, 3450, 3771, 3918, 3951
BfuAI	ACCTGC	1 cut(s)	450
BglI	GCCNNNNNGGC	1 cut(s)	2015
BlpI	GCTNAGC	1 cut(s)	3237
BmcAI	AGTACT	1 cut(s)	2272
BmeT110I	CYCGRG	3 cut(s)	1076, 3030, 3284
BmiI	GGNNCC	8 cut(s)	15, 113, 361, 604, 1356, 1923, 2019, 3482
BmrI	ACTGGG	2 cut(s)	1749, 2093
BmsI	GCATC	2 cut(s)	94, 2332
BmuI	ACTGGG	2 cut(s)	1749, 2093
BpiI	GAAGAC	9 cut(s)	239, 242, 297, 416, 419, 482, 485, 540, 2683
BplI	GAGNNNNNCTC	4 cut(s)	1199, 1231, 3647, 3679
BpmI	CTGGAG	1 cut(s)	3029
Bpu10I	CCTNAGC	1 cut(s)	2784
Bpu1102I	GCTNAGC	1 cut(s)	3237
BpuEI	CTTGAG	4 cut(s)	781, 3649, 4087, 4252
BpuMI	CCSGG	2 cut(s)	3031, 3032
BsaAI	YACGTR	1 cut(s)	2909
BsaBI	GATNNNNATC	2 cut(s)	2939, 3692
BsaHI	GRCGYC	3 cut(s)	158, 264, 507
BsaWI	WCCGGW	2 cut(s)	2560, 4189
BsaXI	ACNNNNNCTCC	4 cut(s)	1938, 1968, 4074, 4104
Bsc4I	CCNNNNNNNGG	8 cut(s)	1431, 1563, 2046, 2503, 3031, 3368, 3822, 4150
Bse118I	RCCGGY	1 cut(s)	4189
Bse1I	ACTGG	7 cut(s)	1755, 2099, 2151, 2601, 2628, 2875, 3148
Bse3DI	GCAATG	7 cut(s)	309, 552, 1217, 2976, 3231, 3765, 3861
Bse8I	GATNNNNATC	2 cut(s)	2939, 3692
BseGI	GGATG	9 cut(s)	871, 931, 1417, 2188, 2372, 2612, 2794, 2828, 3497
BseJI	GATNNNNATC	2 cut(s)	2939, 3692
BseLI	CCNNNNNNNGG	8 cut(s)	1431, 1563, 2046, 2503, 3031, 3368, 3822, 4150
BseMI	GCAATG	7 cut(s)	309, 552, 1217, 2976, 3231, 3765, 3861
BseMII	CTCAG	9 cut(s)	678, 1851, 2061, 2628, 2775, 3081, 3091, 3141, 3438
BseNI	ACTGG	7 cut(s)	1755, 2099, 2151, 2601, 2628, 2875, 3148
BseRI	GAGGAG	4 cut(s)	1182, 1348, 1673, 1962
BseX3I	CGGCCG	1 cut(s)	2232
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	3 cut(s)	246, 423, 489
Bsh1285I	CGRYCG	2 cut(s)	2235, 3942
BshFI	GGCC	9 cut(s)	48, 956, 1618, 1878, 2234, 2648, 3381, 3522, 3887
BshNI	GGYRCC	1 cut(s)	111
BshTI	ACCGGT	1 cut(s)	4189
BsiEI	CGRYCG	2 cut(s)	2235, 3942
BsiHKAI	GWGCWC	3 cut(s)	715, 1098, 1551
BsiHKCI	CYCGRG	3 cut(s)	1076, 3030, 3284
BsiSI	CCGG	3 cut(s)	2561, 3031, 4190
BslFI	GGGAC	3 cut(s)	1712, 3047, 4013
BslI	CCNNNNNNNGG	8 cut(s)	1431, 1563, 2046, 2503, 3031, 3368, 3822, 4150
BsmAI	GTCTC	6 cut(s)	244, 421, 487, 1604, 2211, 2827
BsmFI	GGGAC	3 cut(s)	1712, 3047, 4013
BsmI	GAATGC	3 cut(s)	52, 1292, 2081
BsnI	GGCC	9 cut(s)	48, 956, 1618, 1878, 2234, 2648, 3381, 3522, 3887
BsoBI	CYCGRG	3 cut(s)	1076, 3030, 3284
Bsp1286I	GDGCHC	3 cut(s)	715, 1098, 1551
Bsp1407I	TGTACA	3 cut(s)	909, 1954, 3404
Bsp1720I	GCTNAGC	1 cut(s)	3237
Bsp19I	CCATGG	2 cut(s)	3523, 3994
BspACI	CCGC	5 cut(s)	36, 1655, 2654, 3501, 3911
BspANI	GGCC	9 cut(s)	48, 956, 1618, 1878, 2234, 2648, 3381, 3522, 3887
BspCNI	CTCAG	9 cut(s)	679, 1850, 2062, 2629, 2776, 3080, 3090, 3140, 3437
BspHI	TCATGA	1 cut(s)	1098
BspLI	GGNNCC	8 cut(s)	15, 113, 361, 604, 1356, 1923, 2019, 3482
BspMAI	CTGCAG	2 cut(s)	1993, 2278
BspMI	ACCTGC	1 cut(s)	450
BspPI	GGATC	6 cut(s)	878, 1351, 1452, 2021, 2437, 3555
BspQI	GCTCTTC	3 cut(s)	209, 386, 452
BspT107I	GGYRCC	1 cut(s)	111
BsrDI	GCAATG	7 cut(s)	309, 552, 1217, 2976, 3231, 3765, 3861
BsrFI	RCCGGY	1 cut(s)	4189
BsrGI	TGTACA	3 cut(s)	909, 1954, 3404
BsrI	ACTGG	7 cut(s)	1755, 2099, 2151, 2601, 2628, 2875, 3148
BssAI	RCCGGY	1 cut(s)	4189
BssNI	GRCGYC	3 cut(s)	158, 264, 507
BssSI	CACGAG	1 cut(s)	916
BssT1I	CCWWGG	7 cut(s)	1027, 2040, 2376, 3382, 3476, 3523, 3994
Bst2BI	CACGAG	1 cut(s)	916
Bst4CI	ACNGT	9 cut(s)	238, 299, 415, 481, 542, 862, 909, 1072, 1726
Bst6I	CTCTTC	6 cut(s)	209, 386, 452, 1455, 2247, 4214
BstACI	GRCGYC	3 cut(s)	158, 264, 507
BstAPI	GCANNNNNTGC	2 cut(s)	2753, 2978
BstAUI	TGTACA	3 cut(s)	909, 1954, 3404
BstBAI	YACGTR	1 cut(s)	2909
BstDSI	CCRYGG	2 cut(s)	3523, 3994
BstF5I	GGATG	9 cut(s)	871, 931, 1417, 2188, 2372, 2612, 2794, 2828, 3497
BstHHI	GCGC	1 cut(s)	3512
BstMAI	GTCTC	6 cut(s)	244, 421, 487, 1604, 2211, 2827
BstMCI	CGRYCG	2 cut(s)	2235, 3942
BstSFI	CTRYAG	8 cut(s)	1696, 1989, 2274, 3121, 3450, 3771, 3918, 3951
BstV2I	GAAGAC	9 cut(s)	239, 242, 297, 416, 419, 482, 485, 540, 2683
BstX2I	RGATCY	4 cut(s)	1343, 1444, 2429, 3547
BstXI	CCANNNNNNTGG	1 cut(s)	2623
BstYI	RGATCY	4 cut(s)	1343, 1444, 2429, 3547
BstZI	CGGCCG	1 cut(s)	2232
BsuRI	GGCC	9 cut(s)	48, 956, 1618, 1878, 2234, 2648, 3381, 3522, 3887
BtgI	CCRYGG	2 cut(s)	3523, 3994
BtsCI	GGATG	9 cut(s)	871, 931, 1417, 2188, 2372, 2612, 2794, 2828, 3497
BtsI	GCAGTG	4 cut(s)	334, 577, 2034, 3491
BveI	ACCTGC	1 cut(s)	450
CaiI	CAGNNNCTG	1 cut(s)	814
CciI	TCATGA	1 cut(s)	1098
CfoI	GCGC	1 cut(s)	3512
Cfr10I	RCCGGY	1 cut(s)	4189
Cfr9I	CCCGGG	1 cut(s)	3030
CseI	GACGC	1 cut(s)	3570
Csp6I	GTAC	8 cut(s)	112, 910, 939, 1955, 2271, 2537, 3405, 4141
CspAI	ACCGGT	1 cut(s)	4189
CviQI	GTAC	8 cut(s)	112, 910, 939, 1955, 2271, 2537, 3405, 4141
DraI	TTTAAA	3 cut(s)	991, 1915, 3315
DrdI	GACNNNNNNGTC	2 cut(s)	338, 581
DseDI	GACNNNNNNGTC	2 cut(s)	338, 581
EaeI	YGGCCR	4 cut(s)	1616, 1876, 2232, 3885
EagI	CGGCCG	1 cut(s)	2232
Eam1104I	CTCTTC	6 cut(s)	209, 386, 452, 1455, 2247, 4214
EarI	CTCTTC	6 cut(s)	209, 386, 452, 1455, 2247, 4214
Ecl136II	GAGCTC	1 cut(s)	1096
EclXI	CGGCCG	1 cut(s)	2232
Eco130I	CCWWGG	7 cut(s)	1027, 2040, 2376, 3382, 3476, 3523, 3994
Eco24I	GRGCYC	1 cut(s)	1098
Eco32I	GATATC	5 cut(s)	1387, 3198, 3279, 3694, 3898
Eco52I	CGGCCG	1 cut(s)	2232
Eco53kI	GAGCTC	1 cut(s)	1096
Eco57I	CTGAAG	3 cut(s)	677, 2868, 4238
Eco88I	CYCGRG	3 cut(s)	1076, 3030, 3284
EcoICRI	GAGCTC	1 cut(s)	1096
EcoO109I	RGGNCCY	2 cut(s)	1637, 2380
EcoRI	GAATTC	1 cut(s)	1815
EcoRV	GATATC	5 cut(s)	1387, 3198, 3279, 3694, 3898
EcoT14I	CCWWGG	7 cut(s)	1027, 2040, 2376, 3382, 3476, 3523, 3994
EcoT22I	ATGCAT	2 cut(s)	1250, 2816
EcoT38I	GRGCYC	1 cut(s)	1098
ErhI	CCWWGG	7 cut(s)	1027, 2040, 2376, 3382, 3476, 3523, 3994
FalI	AAGNNNNNCTT	6 cut(s)	365, 397, 1011, 1043, 3193, 3225
FaqI	GGGAC	3 cut(s)	1712, 3047, 4013
FbaI	TGATCA	1 cut(s)	3759
FokI	GGATG	9 cut(s)	878, 938, 1424, 2195, 2359, 2599, 2801, 2815, 3484
FriOI	GRGCYC	1 cut(s)	1098
FspBI	CTAG	6 cut(s)	1136, 1530, 1592, 2628, 2991, 4076
FspI	TGCGCA	1 cut(s)	3511
GlaI	GCGC	1 cut(s)	3511
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	3029
HaeIII	GGCC	9 cut(s)	48, 956, 1618, 1878, 2234, 2648, 3381, 3522, 3887
HapII	CCGG	3 cut(s)	2561, 3031, 4190
HgaI	GACGC	1 cut(s)	3570
HhaI	GCGC	1 cut(s)	3512
Hin1I	GRCGYC	3 cut(s)	158, 264, 507
Hin6I	GCGC	1 cut(s)	3510
HinP1I	GCGC	1 cut(s)	3510
HincII	GTYRAC	3 cut(s)	1068, 1399, 1810
HindII	GTYRAC	3 cut(s)	1068, 1399, 1810
HindIII	AAGCTT	4 cut(s)	1498, 2662, 3470, 4023
HpaI	GTTAAC	2 cut(s)	1068, 1399
HpaII	CCGG	3 cut(s)	2561, 3031, 4190
HphI	GGTGA	9 cut(s)	1025, 1035, 1163, 1743, 2083, 2550, 3351, 3635, 4000
Hpy166II	GTNNAC	9 cut(s)	1043, 1068, 1399, 1810, 3332, 3359, 3868, 3991, 4214
Hpy8I	GTNNAC	9 cut(s)	1043, 1068, 1399, 1810, 3332, 3359, 3868, 3991, 4214
Hpy99I	CGWCG	1 cut(s)	163
HpyCH4III	ACNGT	9 cut(s)	238, 299, 415, 481, 542, 862, 909, 1072, 1726
HpyCH4IV	ACGT	5 cut(s)	158, 264, 507, 704, 2908
HpySE526I	ACGT	5 cut(s)	158, 264, 507, 704, 2908
Hsp92I	GRCGYC	3 cut(s)	158, 264, 507
HspAI	GCGC	1 cut(s)	3510
KpnI	GGTACC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	3759
KspAI	GTTAAC	2 cut(s)	1068, 1399
LguI	GCTCTTC	3 cut(s)	209, 386, 452
LmnI	GCTCC	6 cut(s)	1093, 1220, 1693, 2023, 3010, 3161
LweI	GCATC	2 cut(s)	94, 2332
MaeI	CTAG	6 cut(s)	1136, 1530, 1592, 2628, 2991, 4076
MaeII	ACGT	5 cut(s)	158, 264, 507, 704, 2908
MfeI	CAATTG	1 cut(s)	2244
MflI	RGATCY	4 cut(s)	1343, 1444, 2429, 3547
MhlI	GDGCHC	3 cut(s)	715, 1098, 1551
MlsI	TGGCCA	2 cut(s)	1878, 3887
MluNI	TGGCCA	2 cut(s)	1878, 3887
MlyI	GAGTC	6 cut(s)	820, 1088, 1757, 2212, 2697, 3029
MmeI	TCCRAC	7 cut(s)	683, 2416, 3064, 3284, 3925, 4018, 4060
Mox20I	TGGCCA	2 cut(s)	1878, 3887
Mph1103I	ATGCAT	2 cut(s)	1250, 2816
MroXI	GAANNNNTTC	2 cut(s)	1667, 2487
MscI	TGGCCA	2 cut(s)	1878, 3887
MslI	CAYNNNNRTG	3 cut(s)	1103, 1544, 2672
Msp20I	TGGCCA	2 cut(s)	1878, 3887
MspA1I	CMGCKG	4 cut(s)	199, 1655, 3245, 3503
MspI	CCGG	3 cut(s)	2561, 3031, 4190
MunI	CAATTG	1 cut(s)	2244
Mva1269I	GAATGC	3 cut(s)	52, 1292, 2081
NciI	CCSGG	2 cut(s)	3031, 3032
NcoI	CCATGG	2 cut(s)	3523, 3994
NlaIV	GGNNCC	8 cut(s)	15, 113, 361, 604, 1356, 1923, 2019, 3482
NmeAIII	GCCGAG	2 cut(s)	1987, 2711
NmuCI	GTSAC	8 cut(s)	265, 329, 508, 572, 826, 1749, 1762, 2089
NsbI	TGCGCA	1 cut(s)	3511
NsiI	ATGCAT	2 cut(s)	1250, 2816
OliI	CACNNNNGTG	1 cut(s)	1544
PaeI	GCATGC	3 cut(s)	759, 2685, 2906
PagI	TCATGA	1 cut(s)	1098
PciI	ACATGT	3 cut(s)	1104, 1997, 2523
PciSI	GCTCTTC	3 cut(s)	209, 386, 452
PctI	GAATGC	3 cut(s)	52, 1292, 2081
PdmI	GAANNNNTTC	2 cut(s)	1667, 2487
PflMI	CCANNNNNTGG	1 cut(s)	3822
PinAI	ACCGGT	1 cut(s)	4189
Ple19I	CGATCG	1 cut(s)	3942
PleI	GAGTC	6 cut(s)	819, 1087, 1756, 2212, 2696, 3029
PpsI	GAGTC	6 cut(s)	819, 1087, 1756, 2212, 2696, 3029
Ppu21I	YACGTR	1 cut(s)	2909
PpuMI	RGGWCCY	2 cut(s)	1637, 2380
PscI	ACATGT	3 cut(s)	1104, 1997, 2523
PshBI	ATTAAT	1 cut(s)	2471
PsiI	TTATAA	2 cut(s)	2285, 3575
Psp124BI	GAGCTC	1 cut(s)	1098
Psp1406I	AACGTT	1 cut(s)	704
Psp5II	RGGWCCY	2 cut(s)	1637, 2380
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	8 cut(s)	15, 113, 361, 604, 1356, 1923, 2019, 3482
PspPPI	RGGWCCY	2 cut(s)	1637, 2380
PstI	CTGCAG	2 cut(s)	1993, 2278
PstNI	CAGNNNCTG	1 cut(s)	814
PsuI	RGATCY	4 cut(s)	1343, 1444, 2429, 3547
PvuI	CGATCG	1 cut(s)	3942
PvuII	CAGCTG	2 cut(s)	199, 3245
RsaI	GTAC	8 cut(s)	113, 911, 940, 1956, 2272, 2538, 3406, 4142
RsaNI	GTAC	8 cut(s)	112, 910, 939, 1955, 2271, 2537, 3405, 4141
RseI	CAYNNNNRTG	3 cut(s)	1103, 1544, 2672
SacI	GAGCTC	1 cut(s)	1098
SapI	GCTCTTC	3 cut(s)	209, 386, 452
ScaI	AGTACT	1 cut(s)	2272
SchI	GAGTC	6 cut(s)	820, 1088, 1757, 2212, 2697, 3029
SduI	GDGCHC	3 cut(s)	715, 1098, 1551
SfaNI	GCATC	2 cut(s)	94, 2332
SfcI	CTRYAG	8 cut(s)	1696, 1989, 2274, 3121, 3450, 3771, 3918, 3951
SmaI	CCCGGG	1 cut(s)	3032
SmiMI	CAYNNNNRTG	3 cut(s)	1103, 1544, 2672
SmlI	CTYRAG	4 cut(s)	760, 3664, 4102, 4267
SmoI	CTYRAG	4 cut(s)	760, 3664, 4102, 4267
SphI	GCATGC	3 cut(s)	759, 2685, 2906
SsiI	CCGC	5 cut(s)	36, 1655, 2654, 3501, 3911
SspI	AATATT	1 cut(s)	1777
SspMI	CTAG	6 cut(s)	1136, 1530, 1592, 2628, 2991, 4076
SstI	GAGCTC	1 cut(s)	1098
StyI	CCWWGG	7 cut(s)	1027, 2040, 2376, 3382, 3476, 3523, 3994
TaaI	ACNGT	9 cut(s)	238, 299, 415, 481, 542, 862, 909, 1072, 1726
TaiI	ACGT	5 cut(s)	161, 267, 510, 707, 2911
TaqI	TCGA	4 cut(s)	873, 1467, 3176, 3938
TatI	WGTACW	4 cut(s)	909, 1954, 2270, 3404
TauI	GCSGC	1 cut(s)	38
TseFI	GTSAC	8 cut(s)	265, 329, 508, 572, 826, 1749, 1762, 2089
Tsp45I	GTSAC	8 cut(s)	265, 329, 508, 572, 826, 1749, 1762, 2089
TspGWI	ACGGA	1 cut(s)	1827
TspMI	CCCGGG	1 cut(s)	3030
Van91I	CCANNNNNTGG	1 cut(s)	3822
VspI	ATTAAT	1 cut(s)	2471
XbaI	TCTAGA	1 cut(s)	1529
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1626, 3249
XmaI	CCCGGG	1 cut(s)	3030
XmnI	GAANNNNTTC	2 cut(s)	1667, 2487
XspI	CTAG	6 cut(s)	1136, 1530, 1592, 2628, 2991, 4076
ZraI	GACGTC	3 cut(s)	159, 265, 508
ZrmI	AGTACT	1 cut(s)	2272
Zsp2I	ATGCAT	2 cut(s)	1250, 2816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.