Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002900

Physical Location & Seq

Genomic Coordinates Reverse (-)

19043103 .. 19049640

Gene Structure 6538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0134400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGCTACATGTACCAAGAGAAGGGTTTGAACAAAAAACACAAGGATTTCTAGCTCTCTTTACAGGAGATACTGGTGAAATTGATTCAGAAGTGAGAGAACAGATTGACACACAGGTAGCAGAGTGTAGGGAGGAAGGGAAGACAGAAATTGTGCCAGGTGTTCTCTTTATAGATGAGGTGCATATGCTTGACATTGAGTGCTTTTCATTTTTGAATCGTGCTTTGGAGAATGAGATGGCTCCAATTTTAGTTATTGCTACGAAGAGAGGGATCACTACGATCAGAGGCACGAACTATAAATCCCCCCATGGGATTCCAATTGATCCCTTGATCGCCTGCATACAATCACCGTTCAGCCTTATACAGAGGGTGAAATTCACAAGATTCTTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

4.93

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	12 - 111	8.8e-47	TIP49 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0002900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38350 AT4G38350
fragaria_vesca	FvH4_2g16650 FvH4_2g16650 FvH4_2g16650 FvH4_2g16650
malus_domestica	MD10G1139800.v1.1
prunus_persica	Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1 Prupe.8G178600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280781
rosa_laevigata	RLG00000013029
rosa_multiflora	Rmu_sc0001197.1_g000010
rosa_roxburghii	Rroxscaffold_7G00187670
rosa_rugosa	Rorug06G0134400
rosa_samantha	Rh6AG247100 Rh6BG249400 Rh6CG250500 Rh6DG241900
rosa_wichuraiana	Rw6G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	281, 320
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	23, 312
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	32, 217
AjnI	CCWGG	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	2 cut(s)	7, 56
AluI	AGCT	2 cut(s)	7, 56
AlwI	GGATC	2 cut(s)	281, 320
ApoI	RAATTY	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	89, 342, 385
BbsI	GAAGAC	1 cut(s)	149
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 312
Bse1I	ACTGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	23, 312
BseNI	ACTGG	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	23, 312
Bsp143I	GATC	4 cut(s)	273, 282, 325, 333
Bsp19I	CCATGG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	281, 320
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	4 cut(s)	273, 282, 325, 333
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	276, 285, 328, 336
BstMBI	GATC	4 cut(s)	273, 282, 325, 333
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	2 cut(s)	11, 311
CviJI	RGCY	4 cut(s)	7, 56, 242, 360
CviKI_1	RGCY	4 cut(s)	7, 56, 242, 360
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	4 cut(s)	275, 284, 327, 335
DpnII	GATC	4 cut(s)	273, 282, 325, 333
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	2 cut(s)	14, 314
FaiI	YATR	9 cut(s)	12, 173, 186, 188, 300, 312, 344, 365, 397
FatI	CATG	2 cut(s)	10, 310
FauNDI	CATATG	1 cut(s)	186
FspBI	CTAG	1 cut(s)	53
Hin1II	CATG	2 cut(s)	14, 314
HinfI	GANTC	4 cut(s)	86, 217, 316, 387
HphI	GGTGA	3 cut(s)	89, 342, 385
Hpy188I	TCNGA	2 cut(s)	91, 287
Hpy188III	TCNNGA	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	17, 131
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	184, 342
Hsp92II	CATG	2 cut(s)	14, 314
Kzo9I	GATC	4 cut(s)	273, 282, 325, 333
LmnI	GCTCC	2 cut(s)	4, 247
LpnPI	CCDG	6 cut(s)	51, 60, 101, 144, 171, 352
MaeI	CTAG	1 cut(s)	53
MalI	GATC	4 cut(s)	275, 284, 327, 335
MboI	GATC	4 cut(s)	273, 282, 325, 333
MboII	GAAGA	2 cut(s)	154, 277
MfeI	CAATTG	1 cut(s)	321
MluCI	AATT	5 cut(s)	81, 150, 246, 321, 377
MnlI	CCTC	5 cut(s)	127, 172, 263, 281, 363
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	310
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	4 cut(s)	273, 282, 325, 333
NlaIII	CATG	2 cut(s)	14, 314
NlaIV	GGNNCC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	14
PciI	ACATGT	1 cut(s)	10
PfeI	GAWTC	4 cut(s)	86, 217, 316, 387
PscI	ACATGT	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	243
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
Sau3AI	GATC	4 cut(s)	273, 282, 325, 333
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	5 cut(s)	9, 58, 120, 163, 183
Sse9I	AATT	5 cut(s)	81, 150, 246, 321, 377
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	354
TasI	AATT	5 cut(s)	81, 150, 246, 321, 377
TfiI	GAWTC	4 cut(s)	86, 217, 316, 387
TspDTI	ATGAA	1 cut(s)	198
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.