Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003514

Physical Location & Seq

Genomic Coordinates Reverse (-)

15054355 .. 15057692

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAAGAAGACCACCATTTCTATTTCTCAGAAGGACCCTAAACGAAGGAAGTTATTCTTTCGTTCATGTCTCCTTTCTAGCCTGCTGATGCTTTCTGCAGTTTTCTTCTTTGGAAGCCATTTTGTTGTCACAGATTATAAAGAGAAGTTCTTATCATGGGGATTGGTTGATGCTATGCACAATGCAATGTCTAAAAATTGCGAGGCTCAATGCAGACCTGAGGGAACAGAGGCATTACCTAAAGGAATTGTTTCCAAGACCTCTGATTTTGTAATGCAGCCGTTATGGGGACCCCGAACTCCAAAGAAACCAAAGTCATCAACAAATTTACTTGCCATGGCAGTTGGAATTAAGCAAAAAGAAAGTGCAAACAAAATTGTAAACAAGTTTCTATCAAGTGATTTCGTCGTAATGCTATTTCATTATGATGGTAATGTAAATGATTGGCGGGATTTGGAATGGAGTGGTCAGGCCATACATGTATCTGCTATGAATCAAACCAAGTGGTGGTATGCGAAGCGATTCTTACACCCAGATATTGTTTCTGAGTATGCATTCATCTTCCTTTGGGATGAAGACCTTGGAATTGAGAACTTTAATGTTGGAAGATATCTATCAATTATTAAAAAAGAGGGGCTTGAAATATCACAGCCAGCACTTGATCCTGACAGCTCGGAGGTGCATCATGATCTTACAGCAAGAGACAAGAGATCAGAAGTACATAGAAAGATAAACAAGACAATTGGTGGTGGAAGGCGTTGCAATGAAAATAGCACAGATCCTCCATGCACAGGGTTTGTTGAAATGATGGCTCCTGTATTTTCAAGAGCATCGTGGCGCTGTGTGTGGCATATGATTCAGAATGACTTGGTTCATGCATGGGGATTGGATTTTCAGCTTGGTTATTGTTCACAGGGTGATCGAACCAAAAACATAGGAATTGTTGATTCTGAGTACATTGTTCATTATGGTCTTCCTACACTAGGGGGTTCTGCAGCAAACAAAACGAATGCTGAAGAACAAGATCAAGCTGCTAAAAATATAAGCTTGCCTACTTCAGAACAACTGGCACCATCACGGTCACCTCCATCTGGCCCTAGAATTGAGGTGAGGAAGCTATCCTTAGTTGAACTAGAAAGATTCAAGAACAGATGGAAAAAGGCAATTAGAGAAGATAATTGCTGGGTTGATCCATACCAACAGCCACCACAGCAGAGTAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

409

Amino Acids

46.51

Weight (kDa)

9.01

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	1 - 278	9.8e-127	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12840 AT4G12840 AT4G12840
fragaria_vesca	FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530
malus_domestica	MD05G1154100.v1.1 MD10G1148400.v1.1
prunus_persica	Prupe.8G187400_v2.0.a1 Prupe.8G187400_v2.0.a1 Prupe.8G187400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0282241
rosa_laevigata	RLG00000012898
rosa_multiflora	Rmu_sc0014549.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186370
rosa_rugosa	Rorug02G0256100 Rorug03G0287100 Rorug03G0287200 Rorug06G0146600 Rorug07G0302200
rosa_samantha	Rh6AG259700 Rh6BG263000 Rh6CG261900 Rh6DG253900
rosa_wichuraiana	Rw6G022470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	1069
AccB7I	CCANNNNNTGG	1 cut(s)	507
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	3 cut(s)	656, 773, 1184
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	2 cut(s)	1035, 1041
AdeI	CACNNNGTG	1 cut(s)	917
AfaI	GTAC	2 cut(s)	720, 956
AfiI	CCNNNNNNNGG	5 cut(s)	287, 507, 791, 983, 1091
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	5 cut(s)	641, 803, 825, 1130, 1144
AluBI	AGCT	5 cut(s)	672, 898, 1031, 1047, 1117
AluI	AGCT	5 cut(s)	672, 898, 1031, 1047, 1117
Alw26I	GTCTC	2 cut(s)	74, 696
AlwI	GGATC	3 cut(s)	656, 773, 1184
AoxI	GGCC	2 cut(s)	471, 1093
ApeKI	GCWGC	3 cut(s)	277, 995, 1031
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	3 cut(s)	53, 250, 521
AspLEI	GCGC	1 cut(s)	840
AspS9I	GGNCC	3 cut(s)	34, 290, 1094
AsuHPI	GGTGA	3 cut(s)	929, 1074, 1120
AvaII	GGWCC	2 cut(s)	34, 290
AxyI	CCTNAGG	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	1069
BbsI	GAAGAC	3 cut(s)	14, 582, 965
BbvI	GCAGC	3 cut(s)	289, 1007, 1018
BccI	CCATC	5 cut(s)	422, 802, 1081, 1096, 1146
BceAI	ACGGC	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	74, 696
BfaI	CTAG	4 cut(s)	78, 983, 1098, 1133
BfmI	CTRYAG	2 cut(s)	96, 993
BfoI	RGCGCY	1 cut(s)	841
BisI	GCNGC	3 cut(s)	278, 996, 1032
BlsI	GCNGC	3 cut(s)	279, 997, 1033
Bme18I	GGWCC	2 cut(s)	34, 290
BmgT120I	GGNCC	3 cut(s)	34, 290, 1094
BmiI	GGNNCC	5 cut(s)	36, 291, 292, 813, 1071
BmsI	GCATC	4 cut(s)	78, 160, 691, 839
BpiI	GAAGAC	3 cut(s)	14, 582, 965
BsaBI	GATNNNNATC	1 cut(s)	613
BsaJI	CCNNGG	2 cut(s)	336, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	766, 796
Bsc4I	CCNNNNNNNGG	5 cut(s)	287, 507, 791, 983, 1091
Bse1I	ACTGG	1 cut(s)	1071
Bse21I	CCTNAGG	1 cut(s)	219
Bse3DI	GCAATG	2 cut(s)	192, 769
Bse8I	GATNNNNATC	1 cut(s)	613
BseDI	CCNNGG	2 cut(s)	336, 580
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	613
BseLI	CCNNNNNNNGG	5 cut(s)	287, 507, 791, 983, 1091
BseMI	GCAATG	2 cut(s)	192, 769
BseMII	CTCAG	4 cut(s)	41, 210, 537, 942
BseNI	ACTGG	1 cut(s)	1071
BseXI	GCAGC	3 cut(s)	289, 1007, 1018
BseYI	CCCAGC	1 cut(s)	1182
BshFI	GGCC	2 cut(s)	473, 1095
BshNI	GGYRCC	1 cut(s)	1069
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	5 cut(s)	287, 507, 791, 983, 1091
BsmAI	GTCTC	2 cut(s)	74, 696
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	2 cut(s)	554, 1015
BsnI	GGCC	2 cut(s)	473, 1095
Bsp143I	GATC	7 cut(s)	661, 688, 710, 778, 919, 1024, 1189
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	473, 1095
BspCNI	CTCAG	4 cut(s)	40, 211, 538, 943
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	5 cut(s)	36, 291, 292, 813, 1071
BspMAI	CTGCAG	2 cut(s)	100, 997
BspPI	GGATC	3 cut(s)	656, 773, 1184
BspT107I	GGYRCC	1 cut(s)	1069
BsrDI	GCAATG	2 cut(s)	192, 769
BsrI	ACTGG	1 cut(s)	1071
BssECI	CCNNGG	2 cut(s)	336, 580
BssMI	GATC	7 cut(s)	661, 688, 710, 778, 919, 1024, 1189
BssT1I	CCWWGG	2 cut(s)	336, 580
Bst4CI	ACNGT	1 cut(s)	1080
BstC8I	GCNNGC	3 cut(s)	83, 654, 1049
BstDEI	CTNAG	5 cut(s)	27, 219, 546, 951, 1123
BstDSI	CCRYGG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	1080
BstENI	CCTNNNNNAGG	1 cut(s)	981
BstF5I	GGATG	1 cut(s)	577
BstH2I	RGCGCY	1 cut(s)	841
BstHHI	GCGC	1 cut(s)	840
BstKTI	GATC	7 cut(s)	664, 691, 713, 781, 922, 1027, 1192
BstMAI	GTCTC	2 cut(s)	74, 696
BstMBI	GATC	7 cut(s)	661, 688, 710, 778, 919, 1024, 1189
BstMWI	GCNNNNNNNGC	1 cut(s)	1210
BstNSI	RCATGY	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	1080
BstSFI	CTRYAG	2 cut(s)	96, 993
BstV1I	GCAGC	3 cut(s)	289, 1007, 1018
BstV2I	GAAGAC	3 cut(s)	14, 582, 965
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
Bsu36I	CCTNAGG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	473, 1095
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	83, 654, 1049
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	840
Cfr13I	GGNCC	3 cut(s)	34, 290, 1094
Csp6I	GTAC	2 cut(s)	719, 955
CspCI	CAANNNNNGTGG	2 cut(s)	485, 520
CviAII	CATG	8 cut(s)	66, 156, 337, 479, 686, 786, 875, 879
CviQI	GTAC	2 cut(s)	719, 955
DdeI	CTNAG	5 cut(s)	27, 219, 546, 951, 1123
DpnI	GATC	7 cut(s)	663, 690, 712, 780, 921, 1026, 1191
DpnII	GATC	7 cut(s)	661, 688, 710, 778, 919, 1024, 1189
DraIII	CACNNNGTG	1 cut(s)	917
Eco130I	CCWWGG	2 cut(s)	336, 580
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	34, 290
Eco57I	CTGAAG	2 cut(s)	1035, 1041
Eco81I	CCTNAGG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	1080
EcoNI	CCTNNNNNAGG	1 cut(s)	981
EcoO109I	RGGNCCY	2 cut(s)	34, 290
EcoO65I	GGTNACC	1 cut(s)	1080
EcoRV	GATATC	1 cut(s)	611
EcoT14I	CCWWGG	2 cut(s)	336, 580
EcoT22I	ATGCAT	2 cut(s)	556, 880
ErhI	CCWWGG	2 cut(s)	336, 580
FaeI	CATG	8 cut(s)	69, 159, 340, 482, 689, 789, 878, 882
FalI	AAGNNNNNCTT	8 cut(s)	41, 73, 509, 541, 621, 653, 1106, 1138
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	8 cut(s)	65, 155, 336, 478, 685, 785, 874, 878
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	1 cut(s)	852
Fnu4HI	GCNGC	3 cut(s)	278, 996, 1032
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	278, 996, 1032
FspBI	CTAG	4 cut(s)	78, 983, 1098, 1133
GlaI	GCGC	1 cut(s)	839
GluI	GCNGC	3 cut(s)	278, 996, 1032
GsaI	CCCAGC	1 cut(s)	1186
HaeII	RGCGCY	1 cut(s)	841
HaeIII	GGCC	2 cut(s)	473, 1095
HhaI	GCGC	1 cut(s)	840
Hin1II	CATG	8 cut(s)	69, 159, 340, 482, 689, 789, 878, 882
Hin6I	GCGC	1 cut(s)	838
HinP1I	GCGC	1 cut(s)	838
HindIII	AAGCTT	1 cut(s)	1045
HinfI	GANTC	5 cut(s)	493, 522, 856, 947, 1140
HphI	GGTGA	3 cut(s)	929, 1074, 1120
Hpy166II	GTNNAC	2 cut(s)	382, 911
Hpy188I	TCNGA	8 cut(s)	30, 265, 547, 676, 715, 861, 952, 1060
Hpy188III	TCNNGA	4 cut(s)	665, 686, 825, 1144
Hpy8I	GTNNAC	2 cut(s)	382, 911
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	3 cut(s)	25, 39, 747
HpyCH4III	ACNGT	1 cut(s)	1080
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1210
HpyF3I	CTNAG	5 cut(s)	27, 219, 546, 951, 1123
Hsp92II	CATG	8 cut(s)	69, 159, 340, 482, 689, 789, 878, 882
HspAI	GCGC	1 cut(s)	838
KflI	GGGWCCC	1 cut(s)	290
Kzo9I	GATC	7 cut(s)	661, 688, 710, 778, 919, 1024, 1189
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	3 cut(s)	289, 1007, 1018
LweI	GCATC	4 cut(s)	78, 160, 691, 839
MaeI	CTAG	4 cut(s)	78, 983, 1098, 1133
MaeIII	GTNAC	2 cut(s)	127, 1080
MalI	GATC	7 cut(s)	663, 690, 712, 780, 921, 1026, 1191
MboI	GATC	7 cut(s)	661, 688, 710, 778, 919, 1024, 1189
MboII	GAAGA	9 cut(s)	16, 19, 97, 553, 587, 618, 965, 1028, 1184
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	778
MmeI	TCCRAC	2 cut(s)	325, 583
Mph1103I	ATGCAT	2 cut(s)	556, 880
MroXI	GAANNNNTTC	3 cut(s)	53, 250, 521
MseI	TTAA	3 cut(s)	351, 597, 624
MslI	CAYNNNNRTG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	554, 1015
MwoI	GCNNNNNNNGC	1 cut(s)	1210
NcoI	CCATGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	7 cut(s)	661, 688, 710, 778, 919, 1024, 1189
NlaIII	CATG	8 cut(s)	69, 159, 340, 482, 689, 789, 878, 882
NlaIV	GGNNCC	5 cut(s)	36, 291, 292, 813, 1071
NmuCI	GTSAC	2 cut(s)	127, 1080
NsiI	ATGCAT	2 cut(s)	556, 880
NspI	RCATGY	1 cut(s)	482
PagI	TCATGA	1 cut(s)	685
PciI	ACATGT	1 cut(s)	478
PctI	GAATGC	2 cut(s)	554, 1015
PdmI	GAANNNNTTC	3 cut(s)	53, 250, 521
PfeI	GAWTC	5 cut(s)	493, 522, 856, 947, 1140
PflMI	CCANNNNNTGG	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	279, 997, 1033
PpuMI	RGGWCCY	2 cut(s)	34, 290
PscI	ACATGT	1 cut(s)	478
PsiI	TTATAA	1 cut(s)	138
Psp5II	RGGWCCY	2 cut(s)	34, 290
PspEI	GGTNACC	1 cut(s)	1080
PspFI	CCCAGC	1 cut(s)	1182
PspN4I	GGNNCC	5 cut(s)	36, 291, 292, 813, 1071
PspPI	GGNCC	3 cut(s)	34, 290, 1094
PspPPI	RGGWCCY	2 cut(s)	34, 290
PstI	CTGCAG	2 cut(s)	100, 997
PsuI	RGATCY	1 cut(s)	778
RsaI	GTAC	2 cut(s)	720, 956
RsaNI	GTAC	2 cut(s)	719, 955
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	351, 597, 624
SatI	GCNGC	3 cut(s)	278, 996, 1032
Sau3AI	GATC	7 cut(s)	661, 688, 710, 778, 919, 1024, 1189
Sau96I	GGNCC	3 cut(s)	34, 290, 1094
SfaNI	GCATC	4 cut(s)	78, 160, 691, 839
SfcI	CTRYAG	2 cut(s)	96, 993
SinI	GGWCC	2 cut(s)	34, 290
SmiMI	CAYNNNNRTG	1 cut(s)	426
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	4 cut(s)	78, 983, 1098, 1133
StyI	CCWWGG	2 cut(s)	336, 580
TaaI	ACNGT	1 cut(s)	1080
TaqI	TCGA	1 cut(s)	922
TatI	WGTACW	2 cut(s)	718, 954
TfiI	GAWTC	5 cut(s)	493, 522, 856, 947, 1140
Tru1I	TTAA	3 cut(s)	351, 597, 624
Tru9I	TTAA	3 cut(s)	351, 597, 624
TseFI	GTSAC	2 cut(s)	127, 1080
TseI	GCWGC	3 cut(s)	277, 995, 1031
Tsp45I	GTSAC	2 cut(s)	127, 1080
TspDTI	ATGAA	9 cut(s)	17, 54, 410, 506, 547, 588, 780, 863, 953
Van91I	CCANNNNNTGG	1 cut(s)	507
VpaK11BI	GGWCC	2 cut(s)	34, 290
XagI	CCTNNNNNAGG	1 cut(s)	981
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	482
XmnI	GAANNNNTTC	3 cut(s)	53, 250, 521
XspI	CTAG	4 cut(s)	78, 983, 1098, 1133
Zsp2I	ATGCAT	2 cut(s)	556, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.