Rorug06G0146600

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003514
Physical Location & Seq
Reverse (-)
20925317 .. 20926671
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0146600.1

Sequence Viewer

Length: 882 bp
ATGGCTCGTGTTGCAAACAGTGTGTGCACAAGTCCTAATGAAGAAGAGAATGAGCTGAGAAAAGGGCCATGGACGCTTGACGAAGACACCCTGCTCATAAATTACATTGCCAACCACGGCGAAGGCCATTGGAATGCCTTAGCAAAATGTGCAGGATTGAAAAGGACAGGAAAAAGCTGCAGATTGAGGTGGCTTAATTATCTGAAACCCGACATCAAGCATGGGAACCTTACTCCACAAGAACAACTCTTGATCCTTGAACTCCATTTCGAGTGGGGTAACAGGTGGTCAAAAATAGCGCAACATTTGCCAGGAAGAACAGACAATGAGATTAAGACCTACTGGAGAACAAGGGTGCAGAAACAGGCGCGCCAACTTAATATTGAGTCTAATAGCAAGAGGTTTCTTGATGCGGTTCGATGTTTCTGGATGCCGACTTTGCATCAGAAGATGGAGCAAACTTCTTCACTTAGTTTAGACCCTTCTTCTTCTTCTTCTCTACGTAATTCTCAAATCTCTGTAGCTCCTTCTCTGTCTCCTCAAACTTACTCAGTTTCTTCTTCTCCACCAAGCAAGGTGGTCTCACACGTATCTGATTATTCCCCAATTGGAAATTCAAGCCCAAGTCATAATAGTCTTTCCTCGGATTCTCTTATTTCACAGCTGCCTCAAATTCAAGAACAACCAGCAAGTTCATCCCATGCCTTTGAAGCTCTAAATGACAATTATTATGTGGACTATGACATGGAGGGTTTTAGCGTTGACCCTGTTTCAGAAATGGCCTCTTTTGACACTTCACAGTTTGATTGCCAGACGGCAGAAAGTGATTGGATACCAGACAATTATATGACTGACACTTTATGGAGCATGCAGGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

293

Amino Acids

33.15

Weight (kDa)

5.47

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 68 8.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 81 5.8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 117 2.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 124 3.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 370
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 613, 672
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 5 cut(s) 160, 260, 618, 677, 710
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 598, 630
AluBI AGCT 5 cut(s) 55, 177, 524, 664, 713
AluI AGCT 5 cut(s) 55, 177, 524, 664, 713
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 540, 586
Alw44I GTGCAC 1 cut(s) 25
AlwI GGATC 1 cut(s) 247
AoxI GGCC 3 cut(s) 65, 124, 780
ApaLI GTGCAC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 177, 664
ApoI RAATTY 2 cut(s) 613, 672
AscI GGCGCGCC 1 cut(s) 368
AspLEI GCGC 3 cut(s) 301, 370, 372
AspS9I GGNCC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 29
BauI CACGAG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 164, 651
BccI CCATC 1 cut(s) 445
BceAI ACGGC 2 cut(s) 133, 831
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 825
BcoDI GTCTC 2 cut(s) 540, 586
BfmI CTRYAG 2 cut(s) 178, 519
BfuI GTATCC 1 cut(s) 825
BisI GCNGC 2 cut(s) 178, 665
BlsI GCNGC 2 cut(s) 179, 666
Bme1390I CCNGG 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 3 cut(s) 400, 420, 451
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 139
BsaAI YACGTR 2 cut(s) 503, 589
BsaI GGTCTC 1 cut(s) 586
BsaJI CCNNGG 3 cut(s) 68, 115, 642
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 68, 115, 642
BseGI GGATG 3 cut(s) 435, 695, 882
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 47, 564
BseNI ACTGG 1 cut(s) 347
BsePI GCGCGC 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 528
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 164, 651
BsgI GTGCAG 2 cut(s) 171, 377
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 3 cut(s) 67, 126, 782
BsiHKAI GWGCWC 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 540, 586
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 3 cut(s) 67, 126, 782
Bso31I GGTCTC 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 1 cut(s) 413
BspANI GGCC 3 cut(s) 67, 126, 782
BspCNI CTCAG 2 cut(s) 48, 563
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 227
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 68, 115, 642
BssHII GCGCGC 1 cut(s) 368
BssMI GATC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 20, 801
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 2 cut(s) 149, 307
BstBAI YACGTR 2 cut(s) 503, 589
BstC8I GCNNGC 2 cut(s) 370, 869
BstDEI CTNAG 4 cut(s) 56, 139, 470, 550
BstDSI CCRYGG 2 cut(s) 68, 115
BstF5I GGATG 3 cut(s) 435, 695, 882
BstFNI CGCG 1 cut(s) 370
BstHHI GCGC 3 cut(s) 301, 370, 372
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 540, 586
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 6 cut(s) 11, 73, 149, 307, 439, 710
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 178, 519
BstSLI GKGCMC 1 cut(s) 29
BstSNI TACGTA 1 cut(s) 503
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 164, 651
BstV2I GAAGAC 1 cut(s) 90
BsuI GTATCC 1 cut(s) 825
BsuRI GGCC 3 cut(s) 67, 126, 782
BtgI CCRYGG 2 cut(s) 68, 115
BtsCI GGATG 3 cut(s) 435, 695, 882
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 370, 869
CfoI GCGC 3 cut(s) 301, 370, 372
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 1 cut(s) 82
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 5 cut(s) 69, 221, 701, 745, 868
DdeI CTNAG 4 cut(s) 56, 139, 470, 550
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco105I TACGTA 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 5 cut(s) 72, 224, 704, 748, 871
FatI CATG 5 cut(s) 68, 220, 700, 744, 867
Fnu4HI GCNGC 2 cut(s) 178, 665
FokI GGATG 2 cut(s) 442, 682
Fsp4HI GCNGC 2 cut(s) 178, 665
GlaI GCGC 3 cut(s) 300, 369, 371
GluI GCNGC 2 cut(s) 178, 665
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 3 cut(s) 67, 126, 782
HgaI GACGC 1 cut(s) 82
HhaI GCGC 3 cut(s) 301, 370, 372
Hin1II CATG 5 cut(s) 72, 224, 704, 748, 871
Hin6I GCGC 3 cut(s) 299, 368, 370
HinP1I GCGC 3 cut(s) 299, 368, 370
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 2 cut(s) 386, 647
Hpy166II GTNNAC 3 cut(s) 27, 736, 763
Hpy188I TCNGA 5 cut(s) 204, 447, 595, 646, 775
Hpy188III TCNNGA 4 cut(s) 250, 407, 427, 677
Hpy8I GTNNAC 3 cut(s) 27, 736, 763
HpyAV CCTTC 3 cut(s) 116, 492, 537
HpyCH4III ACNGT 2 cut(s) 20, 801
HpyCH4IV ACGT 2 cut(s) 502, 588
HpyCH4V TGCA 7 cut(s) 14, 27, 152, 180, 358, 442, 871
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 73, 149, 307, 439, 710
HpyF3I CTNAG 4 cut(s) 56, 139, 470, 550
HpySE526I ACGT 2 cut(s) 502, 588
Hsp92II CATG 5 cut(s) 72, 224, 704, 748, 871
HspAI GCGC 3 cut(s) 299, 368, 370
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 454, 529, 864
Lsp1109I GCAGC 2 cut(s) 164, 651
LweI GCATC 3 cut(s) 400, 420, 451
MaeII ACGT 2 cut(s) 502, 588
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MfeI CAATTG 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 8 cut(s) 100, 196, 505, 606, 613, 672, 724, 841
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 7 cut(s) 180, 393, 549, 652, 678, 742, 793
MseI TTAA 3 cut(s) 195, 333, 378
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 664
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 6 cut(s) 11, 73, 149, 307, 439, 710
NcoI CCATGG 1 cut(s) 68
NdeII GATC 1 cut(s) 252
NlaIII CATG 5 cut(s) 72, 224, 704, 748, 871
NlaIV GGNNCC 1 cut(s) 227
NspI RCATGY 1 cut(s) 871
PaeI GCATGC 1 cut(s) 871
PalAI GGCGCGCC 1 cut(s) 368
PauI GCGCGC 1 cut(s) 368
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 647
PkrI GCNGC 2 cut(s) 179, 666
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 2 cut(s) 503, 589
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 182
PteI GCGCGC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 664
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 3 cut(s) 195, 333, 378
SatI GCNGC 2 cut(s) 178, 665
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 29
SfaNI GCATC 3 cut(s) 400, 420, 451
SfcI CTRYAG 2 cut(s) 178, 519
SgsI GGCGCGCC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 132
SnaBI TACGTA 1 cut(s) 503
SphI GCATGC 1 cut(s) 871
Sse9I AATT 8 cut(s) 100, 196, 505, 606, 613, 672, 724, 841
SsiI CCGC 1 cut(s) 413
SspI AATATT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 20, 801
TaiI ACGT 2 cut(s) 505, 591
TaqI TCGA 2 cut(s) 270, 418
TasI AATT 8 cut(s) 100, 196, 505, 606, 613, 672, 724, 841
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 3 cut(s) 195, 333, 378
Tru9I TTAA 3 cut(s) 195, 333, 378
TscAI CASTG 1 cut(s) 25
TseI GCWGC 2 cut(s) 177, 664
TspDTI ATGAA 2 cut(s) 54, 684
TspRI CASTG 1 cut(s) 25
VneI GTGCAC 1 cut(s) 25
XapI RAATTY 2 cut(s) 613, 672
XceI RCATGY 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.