FvH4_2g17530

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003514
Physical Location & Seq
Reverse (-)
15070526 .. 15073987
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17530.t5

Sequence Viewer

Length: 969 bp
ATGAAGAAGACCACCATTTCTATTTCTCAGAAGGACCCTAAACGAAGGAGCTTATTCTTTCGTTCATGTCTCCTTTCTACCCTGCTTATGCTTTCTGCAGTTTTCTTCTTTGGGAGCCATTTTGTTGTCACAGATTATAAAGAGAAGTTCTTATCATGGGAACTGATTGATGCTATGCACAATGCAATGTCTAAAAAATGCGAGGCTCAATGCAGACCTGAGGGAACAGAGGCATTACCTAAAGGAATTGTTTCCAAGACCTCTGATTTTGTAATGCAGCCGTTATGGGGACCCCGAACTCCAAAGAAACCAAAGTCATCAACAAATTTACTTGCCATGGCAGTTGGAATCAAGCAAAAAGAAAGTGCAAACAAAATTGTAAACAAGTTTCTATCAAGTGATTTCGTCGTAATGCTATTTCTTTATGATGGTAATGTAAATGATTGGAGGGATTTGGAATGGAGTGGTCAGGCCATACATGTATCTGCTATGAATCAAACCAAGTGGTGGTATGCGAAGCGATTCTTACACCCAGATATTGTTTCTGAGTATGCATTCATCTTCCTTTGGGATGAAGACCTTGGAATTGAGAACTTTAATGTTGGAAGATATCTGTCAATTATTAAAAAAGAGGGGCTTCAAATATCACAGCCAGCACTTGATCCTGACAACTCAGAGGTTCATCATGATCTTACAGCAAGAGACAAGAAATCAGAAGTACATAGAAAGTTAAACAAGACAATTGGTGGTGGAAGGCGTTGCGATGAAAATAGCACAGATCCTCCATGCACAGGGTTTGTGGAAATGATGGCTCCAGTATTTTCAAGAGCATCCTGGCGCTGTGTGTGGCATATGATTCAGAATGACTTGGTCATGCATGGGGATTGGATTTTCAGCTTGGTTATTGTGCACAGACGAATGCTGAAGAACAAGATCAAGCTGCTAAAAATACAAGCTTACCTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

323

Amino Acids

37.15

Weight (kDa)

9.31

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 70 - 292 2.6e-111 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 507
AclWI GGATC 2 cut(s) 656, 773
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 944
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 3 cut(s) 287, 507, 791
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 2 cut(s) 641, 825
AjnI CCWGG 1 cut(s) 833
AluBI AGCT 4 cut(s) 51, 897, 940, 956
AluI AGCT 4 cut(s) 51, 897, 940, 956
Alw21I GWGCWC 1 cut(s) 912
Alw26I GTCTC 2 cut(s) 74, 696
Alw44I GTGCAC 1 cut(s) 908
AlwI GGATC 2 cut(s) 656, 773
AoxI GGCC 1 cut(s) 471
ApaLI GTGCAC 1 cut(s) 908
ApeKI GCWGC 2 cut(s) 277, 940
ApoI RAATTY 1 cut(s) 325
Asp700I GAANNNNTTC 2 cut(s) 250, 521
AspLEI GCGC 1 cut(s) 840
AspS9I GGNCC 2 cut(s) 34, 290
AvaII GGWCC 2 cut(s) 34, 290
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 912
BbsI GAAGAC 2 cut(s) 14, 582
Bbv12I GWGCWC 1 cut(s) 912
BbvI GCAGC 2 cut(s) 289, 927
BccI CCATC 2 cut(s) 422, 802
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 835
BcoDI GTCTC 2 cut(s) 74, 696
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 841
BisI GCNGC 2 cut(s) 278, 941
BlsI GCNGC 2 cut(s) 279, 942
Bme1390I CCNGG 1 cut(s) 835
Bme18I GGWCC 2 cut(s) 34, 290
BmgT120I GGNCC 2 cut(s) 34, 290
BmiI GGNNCC 5 cut(s) 36, 116, 291, 292, 813
BmrFI CCNGG 1 cut(s) 835
BmsI GCATC 2 cut(s) 160, 839
BpiI GAAGAC 2 cut(s) 14, 582
BpmI CTGGAG 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 336, 580
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 507, 791
Bse1I ACTGG 1 cut(s) 815
Bse21I CCTNAGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 2 cut(s) 336, 580
BseGI GGATG 2 cut(s) 577, 830
BseLI CCNNNNNNNGG 3 cut(s) 287, 507, 791
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 4 cut(s) 41, 210, 537, 687
BseNI ACTGG 1 cut(s) 815
BseSI GKGCMC 1 cut(s) 912
BseXI GCAGC 2 cut(s) 289, 927
BshFI GGCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 912
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 287, 507, 791
BsmAI GTCTC 2 cut(s) 74, 696
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 2 cut(s) 554, 924
BsnI GGCC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 912
Bsp143I GATC 4 cut(s) 661, 688, 778, 933
Bsp19I CCATGG 1 cut(s) 336
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 4 cut(s) 40, 211, 538, 686
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 5 cut(s) 36, 116, 291, 292, 813
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 2 cut(s) 656, 773
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 815
BssECI CCNNGG 2 cut(s) 336, 580
BssMI GATC 4 cut(s) 661, 688, 778, 933
BssT1I CCWWGG 2 cut(s) 336, 580
Bst2UI CCWGG 1 cut(s) 835
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 4 cut(s) 27, 219, 546, 673
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 577, 830
BstH2I RGCGCY 1 cut(s) 841
BstHHI GCGC 1 cut(s) 840
BstKTI GATC 4 cut(s) 664, 691, 781, 936
BstMAI GTCTC 2 cut(s) 74, 696
BstMBI GATC 4 cut(s) 661, 688, 778, 933
BstNI CCWGG 1 cut(s) 835
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 912
BstV1I GCAGC 2 cut(s) 289, 927
BstV2I GAAGAC 2 cut(s) 14, 582
BstX2I RGATCY 1 cut(s) 778
BstYI RGATCY 1 cut(s) 778
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 473
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 777
BtsCI GGATG 2 cut(s) 577, 830
Cac8I GCNNGC 1 cut(s) 654
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 840
Cfr13I GGNCC 2 cut(s) 34, 290
Csp6I GTAC 1 cut(s) 719
CspCI CAANNNNNGTGG 2 cut(s) 485, 520
CviAII CATG 8 cut(s) 66, 156, 337, 479, 686, 786, 874, 878
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 4 cut(s) 27, 219, 546, 673
DpnI GATC 4 cut(s) 663, 690, 780, 935
DpnII GATC 4 cut(s) 661, 688, 778, 933
Eco130I CCWWGG 2 cut(s) 336, 580
Eco32I GATATC 1 cut(s) 611
Eco47I GGWCC 2 cut(s) 34, 290
Eco57I CTGAAG 1 cut(s) 944
Eco81I CCTNAGG 1 cut(s) 219
EcoO109I RGGNCCY 2 cut(s) 34, 290
EcoRII CCWGG 1 cut(s) 833
EcoRV GATATC 1 cut(s) 611
EcoT14I CCWWGG 2 cut(s) 336, 580
EcoT22I ATGCAT 2 cut(s) 556, 879
ErhI CCWWGG 2 cut(s) 336, 580
FaeI CATG 8 cut(s) 69, 159, 340, 482, 689, 789, 877, 881
FalI AAGNNNNNCTT 4 cut(s) 509, 541, 621, 653
FaqI GGGAC 1 cut(s) 303
FatI CATG 8 cut(s) 65, 155, 336, 478, 685, 785, 873, 877
FauNDI CATATG 1 cut(s) 852
Fnu4HI GCNGC 2 cut(s) 278, 941
FokI GGATG 2 cut(s) 584, 817
Fsp4HI GCNGC 2 cut(s) 278, 941
GlaI GCGC 1 cut(s) 839
GluI GCNGC 2 cut(s) 278, 941
GsuI CTGGAG 1 cut(s) 798
HaeII RGCGCY 1 cut(s) 841
HaeIII GGCC 1 cut(s) 473
HhaI GCGC 1 cut(s) 840
Hin1II CATG 8 cut(s) 69, 159, 340, 482, 689, 789, 877, 881
Hin6I GCGC 1 cut(s) 838
HinP1I GCGC 1 cut(s) 838
HindIII AAGCTT 1 cut(s) 954
HinfI GANTC 4 cut(s) 348, 493, 522, 856
Hpy166II GTNNAC 2 cut(s) 382, 910
Hpy188I TCNGA 6 cut(s) 30, 265, 547, 676, 715, 861
Hpy188III TCNNGA 3 cut(s) 665, 686, 825
Hpy8I GTNNAC 2 cut(s) 382, 910
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 25, 39, 747
HpyF3I CTNAG 4 cut(s) 27, 219, 546, 673
Hsp92II CATG 8 cut(s) 69, 159, 340, 482, 689, 789, 877, 881
HspAI GCGC 1 cut(s) 838
KflI GGGWCCC 1 cut(s) 290
Kzo9I GATC 4 cut(s) 661, 688, 778, 933
LmnI GCTCC 3 cut(s) 48, 114, 817
Lsp1109I GCAGC 2 cut(s) 289, 927
LweI GCATC 2 cut(s) 160, 839
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 663, 690, 780, 935
MboI GATC 4 cut(s) 661, 688, 778, 933
MboII GAAGA 7 cut(s) 16, 19, 97, 553, 587, 618, 937
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 1 cut(s) 912
MluCI AATT 6 cut(s) 246, 325, 375, 585, 618, 741
MmeI TCCRAC 2 cut(s) 325, 583
MnlI CCTC 8 cut(s) 196, 214, 223, 271, 441, 625, 670, 792
Mph1103I ATGCAT 2 cut(s) 556, 879
MroXI GAANNNNTTC 2 cut(s) 250, 521
MseI TTAA 3 cut(s) 597, 624, 731
MspR9I CCNGG 1 cut(s) 835
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 2 cut(s) 554, 924
MvaI CCWGG 1 cut(s) 835
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 852
NdeII GATC 4 cut(s) 661, 688, 778, 933
NlaIII CATG 8 cut(s) 69, 159, 340, 482, 689, 789, 877, 881
NlaIV GGNNCC 5 cut(s) 36, 116, 291, 292, 813
NmuCI GTSAC 1 cut(s) 127
NsiI ATGCAT 2 cut(s) 556, 879
NspI RCATGY 1 cut(s) 482
PagI TCATGA 1 cut(s) 685
PciI ACATGT 1 cut(s) 478
PctI GAATGC 2 cut(s) 554, 924
PdmI GAANNNNTTC 2 cut(s) 250, 521
PfeI GAWTC 4 cut(s) 348, 493, 522, 856
PflFI GACNNNGTC 1 cut(s) 869
PflMI CCANNNNNTGG 1 cut(s) 507
PkrI GCNGC 2 cut(s) 279, 942
PpuMI RGGWCCY 2 cut(s) 34, 290
PscI ACATGT 1 cut(s) 478
PsiI TTATAA 1 cut(s) 138
Psp5II RGGWCCY 2 cut(s) 34, 290
Psp6I CCWGG 1 cut(s) 833
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 5 cut(s) 36, 116, 291, 292, 813
PspPI GGNCC 2 cut(s) 34, 290
PspPPI RGGWCCY 2 cut(s) 34, 290
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 778
PsyI GACNNNGTC 1 cut(s) 869
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
SaqAI TTAA 3 cut(s) 597, 624, 731
SatI GCNGC 2 cut(s) 278, 941
Sau3AI GATC 4 cut(s) 661, 688, 778, 933
Sau96I GGNCC 2 cut(s) 34, 290
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 1 cut(s) 912
SfaNI GCATC 2 cut(s) 160, 839
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 34, 290
Sse9I AATT 6 cut(s) 246, 325, 375, 585, 618, 741
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 2 cut(s) 336, 580
TasI AATT 6 cut(s) 246, 325, 375, 585, 618, 741
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 4 cut(s) 348, 493, 522, 856
Tru1I TTAA 3 cut(s) 597, 624, 731
Tru9I TTAA 3 cut(s) 597, 624, 731
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 277, 940
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 7 cut(s) 17, 54, 506, 547, 588, 671, 780
Tth111I GACNNNGTC 1 cut(s) 869
Van91I CCANNNNNTGG 1 cut(s) 507
VneI GTGCAC 1 cut(s) 908
VpaK11BI GGWCC 2 cut(s) 34, 290
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 482
XmnI GAANNNNTTC 2 cut(s) 250, 521
Zsp2I ATGCAT 2 cut(s) 556, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.