Rw6G022470

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003514
Physical Location & Seq
Reverse (-)
44362082 .. 44364761
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022470.1

Sequence Viewer

Length: 1149 bp
ATGTTTTCTGCAGTTTTCTTCTGTGGGAGCCATTTTGTTGTCACAGATTACAAAGAGAAGTTTTTATCATGGGGATTGGTTGATGCTATGCACAATGCAATATCTAAAAATTGCGAGGCTCAATGCAGATCTGAGGGAATTGAGGCATTACCTAAAGGAATTGTTTCCAAGACATCTGACTTTGTAATGCAACCACTATGGGGACCCCGAACTCAAAAGAAACCAAAGTCATCAACAAACTTATTGGCCATTGCAGTTGGAATCAAGCAAAAAGACAGTGTAAACAAAATTGTAAAGAAGTTTCTATCCAGCAATTTCGTCGTGATGCTATTTCATTATGATGGTAATGTAAATGACTGGAGGGATTTGGAATGGAGTGGTCGGGCCATACATGTATCTGCCATGAATCAAACCAAGTGGTGGTATGCAAAGCGATTCTTACACCCAGATATTGTTTCTGAGTATGCATTCATCTTCCTATGGGATGAAGACCTTGGAATCGAAAACTTTAATGTTGGAAGATATCTATCAATTATTAGAAAAGAGGGGCTTGAAATTTCACAGCCAGGACTTGATCCTGACAACTCGGAGGTGCATCATGATTTTACAGCAAGAGACAAGAGATCAGAAGTACATAGGAAGATAAACAAGACAATTGGTGGTGGAAGGCGTTGCAATGAAAATAGCACAGATCCTCCATGCACAGGGTTTGTTGAAATGATGGCCCCTGTTTTTTCAAGAGCATCCTGGCGCTGCGTGTGGCATATGATTCAGAATGACTTGGTTCATGCATGGGGCTTGGATTTTCAGCTTGGTTATTGTGCACAGGGTGATCGAACCCAAAATATCGGAATTGTTGATTCTGAGTACATTGTTCATTACGGTCTTCCTACACTAGGGGGTTCTGCAGCAAACAAAACAAATGCTGAAGAACAAGATCAAGCTGCTAAAAATATGTCTACTTCAAAAAACTGGTATATAATCAAAACTAATGTACCATCGCAGTCATCTCCATCTGACCCTAGAACTGAGGTGAGAAAGCTATCATTTGTTGAACTCGAAATTTTCAAAAACAGATGGAAAAAGGCAATTAGAGAAGATAATTGCTGGGTTGATCCATACCAGAAGCCACCACAGCAGAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

382

Amino Acids

43.7

Weight (kDa)

8.49

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 41 - 365 2e-143 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 420
AccI GTMKAC 1 cut(s) 959
AclWI GGATC 3 cut(s) 569, 686, 1109
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 2 cut(s) 555, 1062
AcuI CTGAAG 1 cut(s) 948
AdeI CACNNNGTG 1 cut(s) 830
AfaI GTAC 3 cut(s) 633, 869, 996
AfiI CCNNNNNNNGG 4 cut(s) 200, 420, 704, 896
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 6 cut(s) 554, 716, 738, 966, 1055, 1069
AjnI CCWGG 2 cut(s) 565, 746
AluBI AGCT 3 cut(s) 811, 944, 1042
AluI AGCT 3 cut(s) 811, 944, 1042
Alw21I GWGCWC 1 cut(s) 826
Alw26I GTCTC 1 cut(s) 609
Alw44I GTGCAC 1 cut(s) 822
AlwI GGATC 3 cut(s) 569, 686, 1109
AoxI GGCC 3 cut(s) 246, 384, 723
ApaLI GTGCAC 1 cut(s) 822
ApeKI GCWGC 3 cut(s) 753, 908, 944
ApoI RAATTY 2 cut(s) 555, 1062
Asp700I GAANNNNTTC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 753
AspS9I GGNCC 3 cut(s) 203, 384, 724
AsuHPI GGTGA 2 cut(s) 842, 1045
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 826
BaeI ACNNNNGTAYC 2 cut(s) 978, 1011
BalI TGGCCA 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 495, 878
Bbv12I GWGCWC 1 cut(s) 826
BbvI GCAGC 3 cut(s) 740, 920, 931
BccI CCATC 5 cut(s) 335, 715, 1006, 1021, 1071
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 2 cut(s) 567, 748
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 2 cut(s) 896, 1023
BfmI CTRYAG 2 cut(s) 9, 906
BfoI RGCGCY 1 cut(s) 754
BglII AGATCT 1 cut(s) 128
BisI GCNGC 3 cut(s) 754, 909, 945
BlsI GCNGC 3 cut(s) 755, 910, 946
Bme1390I CCNGG 2 cut(s) 567, 748
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 3 cut(s) 203, 384, 724
BmiI GGNNCC 4 cut(s) 29, 204, 205, 726
BmrFI CCNGG 2 cut(s) 567, 748
BmsI GCATC 4 cut(s) 73, 315, 604, 752
BpiI GAAGAC 2 cut(s) 495, 878
BpmI CTGGAG 1 cut(s) 379
BsaBI GATNNNNATC 1 cut(s) 526
BsaJI CCNNGG 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 420, 704, 896
Bse1I ACTGG 2 cut(s) 362, 977
Bse3DI GCAATG 2 cut(s) 249, 682
Bse8I GATNNNNATC 1 cut(s) 526
BseBI CCWGG 2 cut(s) 567, 748
BseDI CCNNGG 1 cut(s) 493
BseGI GGATG 2 cut(s) 490, 743
BseJI GATNNNNATC 1 cut(s) 526
BseLI CCNNNNNNNGG 4 cut(s) 200, 420, 704, 896
BseMI GCAATG 2 cut(s) 249, 682
BseMII CTCAG 4 cut(s) 123, 450, 855, 1020
BseNI ACTGG 2 cut(s) 362, 977
BseSI GKGCMC 1 cut(s) 826
BseXI GCAGC 3 cut(s) 740, 920, 931
BseYI CCCAGC 1 cut(s) 1107
BshFI GGCC 3 cut(s) 248, 386, 725
BsiHKAI GWGCWC 1 cut(s) 826
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 200, 420, 704, 896
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 3 cut(s) 248, 386, 725
Bsp1286I GDGCHC 1 cut(s) 826
Bsp143I GATC 7 cut(s) 128, 574, 623, 691, 832, 937, 1114
BspANI GGCC 3 cut(s) 248, 386, 725
BspCNI CTCAG 4 cut(s) 124, 451, 856, 1021
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 4 cut(s) 29, 204, 205, 726
BspMAI CTGCAG 2 cut(s) 13, 910
BspPI GGATC 3 cut(s) 569, 686, 1109
BsrDI GCAATG 2 cut(s) 249, 682
BsrI ACTGG 2 cut(s) 362, 977
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 7 cut(s) 128, 574, 623, 691, 832, 937, 1114
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 2 cut(s) 567, 748
Bst4CI ACNGT 2 cut(s) 278, 884
BstDEI CTNAG 4 cut(s) 132, 459, 864, 1029
BstENI CCTNNNNNAGG 1 cut(s) 894
BstF5I GGATG 2 cut(s) 490, 743
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 7 cut(s) 131, 577, 626, 694, 835, 940, 1117
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 7 cut(s) 128, 574, 623, 691, 832, 937, 1114
BstMWI GCNNNNNNNGC 1 cut(s) 1135
BstNI CCWGG 2 cut(s) 567, 748
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 565, 746
BstSFI CTRYAG 2 cut(s) 9, 906
BstSLI GKGCMC 1 cut(s) 826
BstV1I GCAGC 3 cut(s) 740, 920, 931
BstV2I GAAGAC 2 cut(s) 495, 878
BstX2I RGATCY 2 cut(s) 128, 691
BstYI RGATCY 2 cut(s) 128, 691
BsuRI GGCC 3 cut(s) 248, 386, 725
BtgZI GCGATG 1 cut(s) 984
BtsCI GGATG 2 cut(s) 490, 743
BtsIMutI CAGTG 1 cut(s) 283
CciI TCATGA 1 cut(s) 598
CfoI GCGC 1 cut(s) 753
Cfr13I GGNCC 3 cut(s) 203, 384, 724
Csp6I GTAC 3 cut(s) 632, 868, 995
CspCI CAANNNNNGTGG 2 cut(s) 398, 433
CviAII CATG 7 cut(s) 69, 392, 403, 599, 699, 788, 792
CviQI GTAC 3 cut(s) 632, 868, 995
DdeI CTNAG 4 cut(s) 132, 459, 864, 1029
DpnI GATC 7 cut(s) 130, 576, 625, 693, 834, 939, 1116
DpnII GATC 7 cut(s) 128, 574, 623, 691, 832, 937, 1114
DraIII CACNNNGTG 1 cut(s) 830
EaeI YGGCCR 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 493
Eco32I GATATC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 948
EcoNI CCTNNNNNAGG 1 cut(s) 894
EcoO109I RGGNCCY 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 565, 746
EcoRV GATATC 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 493
EcoT22I ATGCAT 2 cut(s) 469, 793
ErhI CCWWGG 1 cut(s) 493
FaeI CATG 7 cut(s) 72, 395, 406, 602, 702, 791, 795
FalI AAGNNNNNCTT 4 cut(s) 422, 454, 534, 566
FaqI GGGAC 1 cut(s) 216
FatI CATG 7 cut(s) 68, 391, 402, 598, 698, 787, 791
FauNDI CATATG 1 cut(s) 765
FblI GTMKAC 1 cut(s) 959
Fnu4HI GCNGC 3 cut(s) 754, 909, 945
FokI GGATG 2 cut(s) 497, 730
Fsp4HI GCNGC 3 cut(s) 754, 909, 945
FspBI CTAG 2 cut(s) 896, 1023
GlaI GCGC 1 cut(s) 752
GluI GCNGC 3 cut(s) 754, 909, 945
GsaI CCCAGC 1 cut(s) 1111
GsuI CTGGAG 1 cut(s) 379
HaeII RGCGCY 1 cut(s) 754
HaeIII GGCC 3 cut(s) 248, 386, 725
HhaI GCGC 1 cut(s) 753
Hin1II CATG 7 cut(s) 72, 395, 406, 602, 702, 791, 795
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HinfI GANTC 6 cut(s) 261, 406, 435, 498, 769, 860
HphI GGTGA 2 cut(s) 842, 1045
Hpy166II GTNNAC 3 cut(s) 283, 824, 960
Hpy188I TCNGA 9 cut(s) 133, 178, 460, 589, 628, 774, 851, 865, 1018
Hpy188III TCNNGA 4 cut(s) 322, 578, 599, 738
Hpy8I GTNNAC 3 cut(s) 283, 824, 960
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 660
HpyCH4III ACNGT 2 cut(s) 278, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 1135
HpyF3I CTNAG 4 cut(s) 132, 459, 864, 1029
Hsp92II CATG 7 cut(s) 72, 395, 406, 602, 702, 791, 795
HspAI GCGC 1 cut(s) 751
KflI GGGWCCC 1 cut(s) 203
Kzo9I GATC 7 cut(s) 128, 574, 623, 691, 832, 937, 1114
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 3 cut(s) 740, 920, 931
LweI GCATC 4 cut(s) 73, 315, 604, 752
MaeI CTAG 2 cut(s) 896, 1023
MaeIII GTNAC 1 cut(s) 40
MalI GATC 7 cut(s) 130, 576, 625, 693, 834, 939, 1116
MboI GATC 7 cut(s) 128, 574, 623, 691, 832, 937, 1114
MboII GAAGA 8 cut(s) 10, 466, 500, 531, 652, 878, 941, 1109
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 2 cut(s) 128, 691
MhlI GDGCHC 1 cut(s) 826
MlsI TGGCCA 1 cut(s) 248
MluNI TGGCCA 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 238, 496
MnlI CCTC 8 cut(s) 109, 127, 136, 354, 538, 583, 705, 1024
Mox20I TGGCCA 1 cut(s) 248
Mph1103I ATGCAT 2 cut(s) 469, 793
MroXI GAANNNNTTC 1 cut(s) 163
MscI TGGCCA 1 cut(s) 248
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 248
MspR9I CCNGG 2 cut(s) 567, 748
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 2 cut(s) 567, 748
MwoI GCNNNNNNNGC 1 cut(s) 1135
NdeI CATATG 1 cut(s) 765
NdeII GATC 7 cut(s) 128, 574, 623, 691, 832, 937, 1114
NlaIII CATG 7 cut(s) 72, 395, 406, 602, 702, 791, 795
NlaIV GGNNCC 4 cut(s) 29, 204, 205, 726
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 2 cut(s) 469, 793
NspI RCATGY 1 cut(s) 395
PagI TCATGA 1 cut(s) 598
PciI ACATGT 1 cut(s) 391
PctI GAATGC 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 6 cut(s) 261, 406, 435, 498, 769, 860
PflMI CCANNNNNTGG 1 cut(s) 420
PkrI GCNGC 3 cut(s) 755, 910, 946
PpuMI RGGWCCY 1 cut(s) 203
PscI ACATGT 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 565, 746
PspFI CCCAGC 1 cut(s) 1107
PspGI CCWGG 2 cut(s) 565, 746
PspN4I GGNNCC 4 cut(s) 29, 204, 205, 726
PspPI GGNCC 3 cut(s) 203, 384, 724
PspPPI RGGWCCY 1 cut(s) 203
PstI CTGCAG 2 cut(s) 13, 910
PsuI RGATCY 2 cut(s) 128, 691
RsaI GTAC 3 cut(s) 633, 869, 996
RsaNI GTAC 3 cut(s) 632, 868, 995
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 3 cut(s) 754, 909, 945
Sau3AI GATC 7 cut(s) 128, 574, 623, 691, 832, 937, 1114
Sau96I GGNCC 3 cut(s) 203, 384, 724
ScrFI CCNGG 2 cut(s) 567, 748
SduI GDGCHC 1 cut(s) 826
SetI ASST 7 cut(s) 154, 495, 594, 813, 946, 1035, 1044
SfaNI GCATC 4 cut(s) 73, 315, 604, 752
SfcI CTRYAG 2 cut(s) 9, 906
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 339
SspMI CTAG 2 cut(s) 896, 1023
StyD4I CCNGG 2 cut(s) 565, 746
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 2 cut(s) 278, 884
TaqI TCGA 3 cut(s) 501, 835, 1059
TatI WGTACW 2 cut(s) 631, 867
TfiI GAWTC 6 cut(s) 261, 406, 435, 498, 769, 860
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 3 cut(s) 753, 908, 944
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 7 cut(s) 323, 419, 460, 501, 693, 776, 866
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 420
VneI GTGCAC 1 cut(s) 822
VpaK11BI GGWCC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 894
XapI RAATTY 2 cut(s) 555, 1062
XceI RCATGY 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 959
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 2 cut(s) 896, 1023
Zsp2I ATGCAT 2 cut(s) 469, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.