Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014549.1

Orthogroup ID

OG0003514

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2873

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014549.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1118 bp

ttttattctgtgggagccattttgttgtcacagattacaaagagaagtttttatcatggggattggttgatgctatgcacaatgcaatatctaaaaattgcgaggctcaatgcagacctgagggaattgaggcattacctaaaggaattgtttccaagacatctgactttgtaatgcaaccactatggggaccccgaactcaaaagaaaccaaagtcgtcaacaaacttattggccattgcagttggaatcaagcaaaaagacagtgtaaacaaaattgtaaagaagtttctatccagcgatttcgtcgtgatgctatttcattatgatggtaatgtaaatgactggagggatttggaatggagtggtcgggccatacatgtatctgccatgaatcaaaccaagtggtggtatgcaaagcgattcttacacccagatattgtttctgagtatgcattcatcttcctttgggatgaagaccttggaatcgaaaactttaatgttggaagatatctatcaattattagaaaagaggggcttgaaatttcacagccaggacttgatcctgacaactcggaggtgcatcatgattttacagcaagagacaagagatcagaagtacataggaagataaacaagacaattggtggtggaaggcgttgcaatgaaaatagcacagatcctccatgcacagggtttgttgaaatgatggctcctgttttttcaagagcatcctggcgctgcgtgtggcatatgattcagaatgacttggttcatgcatggggcttggattttcagcttggttattgtgcacagggtgatcgaacccaaaatatcggaattgttgattctgagtacattgttcattacggtcttcctacactagggggttctgcagcaaacaaaacaaatgctgaagaacaagatcaagctgctaaaaatatgtctacttcaaaacaactggcaccatcgcagtcatctccatctgaccctagaactgaggtgagaaagctatcatttgttgaactcgaaattttcaaaagcagatggaaaaaggcaattagagaagataattgctgggttgatccataccagaagccaccacagcagagtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

371

Amino Acids

42.29

Weight (kDa)

8.08

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12840 AT4G12840 AT4G12840
fragaria_vesca	FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530
malus_domestica	MD05G1154100.v1.1 MD10G1148400.v1.1
prunus_persica	Prupe.8G187400_v2.0.a1 Prupe.8G187400_v2.0.a1 Prupe.8G187400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0282241
rosa_laevigata	RLG00000012898
rosa_multiflora	Rmu_sc0014549.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186370
rosa_rugosa	Rorug02G0256100 Rorug03G0287100 Rorug03G0287200 Rorug06G0146600 Rorug07G0302200
rosa_samantha	Rh6AG259700 Rh6BG263000 Rh6CG261900 Rh6DG253900
rosa_wichuraiana	Rw6G022470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	963
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	946
AclWI	GGATC	3 cut(s)	556, 673, 1078
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	542, 1031
AcuI	CTGAAG	1 cut(s)	935
AdeI	CACNNNGTG	1 cut(s)	817
AfaI	GTAC	2 cut(s)	620, 856
AfiI	CCNNNNNNNGG	4 cut(s)	187, 407, 691, 883
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	6 cut(s)	541, 703, 725, 953, 1024, 1038
AjnI	CCWGG	2 cut(s)	552, 733
AluBI	AGCT	3 cut(s)	798, 931, 1011
AluI	AGCT	3 cut(s)	798, 931, 1011
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	1 cut(s)	596
Alw44I	GTGCAC	1 cut(s)	809
AlwI	GGATC	3 cut(s)	556, 673, 1078
AoxI	GGCC	2 cut(s)	233, 371
ApaLI	GTGCAC	1 cut(s)	809
ApeKI	GCWGC	3 cut(s)	740, 895, 931
ApoI	RAATTY	2 cut(s)	542, 1031
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	2 cut(s)	190, 371
AsuHPI	GGTGA	2 cut(s)	829, 1014
AvaII	GGWCC	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	963
BbsI	GAAGAC	2 cut(s)	482, 865
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	3 cut(s)	727, 907, 918
BccI	CCATC	5 cut(s)	322, 702, 975, 990, 1040
BciT130I	CCWGG	2 cut(s)	554, 735
BcoDI	GTCTC	1 cut(s)	596
BfaI	CTAG	2 cut(s)	883, 992
BfmI	CTRYAG	1 cut(s)	893
BfoI	RGCGCY	1 cut(s)	741
BisI	GCNGC	3 cut(s)	741, 896, 932
BlsI	GCNGC	3 cut(s)	742, 897, 933
Bme1390I	CCNGG	2 cut(s)	554, 735
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	190, 371
BmiI	GGNNCC	5 cut(s)	16, 191, 192, 713, 965
BmrFI	CCNGG	2 cut(s)	554, 735
BmsI	GCATC	4 cut(s)	60, 302, 591, 739
BpiI	GAAGAC	2 cut(s)	482, 865
BpmI	CTGGAG	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 407, 691, 883
Bse1I	ACTGG	2 cut(s)	349, 965
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	236, 669
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	2 cut(s)	554, 735
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	2 cut(s)	477, 730
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	4 cut(s)	187, 407, 691, 883
BseMI	GCAATG	2 cut(s)	236, 669
BseMII	CTCAG	4 cut(s)	110, 437, 842, 989
BseNI	ACTGG	2 cut(s)	349, 965
BseSI	GKGCMC	1 cut(s)	813
BseXI	GCAGC	3 cut(s)	727, 907, 918
BseYI	CCCAGC	1 cut(s)	1076
BshFI	GGCC	2 cut(s)	235, 373
BshNI	GGYRCC	1 cut(s)	963
BsiHKAI	GWGCWC	1 cut(s)	813
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	4 cut(s)	187, 407, 691, 883
BsmAI	GTCTC	1 cut(s)	596
BsmFI	GGGAC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	235, 373
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp143I	GATC	6 cut(s)	561, 610, 678, 819, 924, 1083
BspANI	GGCC	2 cut(s)	235, 373
BspCNI	CTCAG	4 cut(s)	111, 438, 843, 990
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	5 cut(s)	16, 191, 192, 713, 965
BspMAI	CTGCAG	1 cut(s)	897
BspPI	GGATC	3 cut(s)	556, 673, 1078
BspT107I	GGYRCC	1 cut(s)	963
BsrDI	GCAATG	2 cut(s)	236, 669
BsrI	ACTGG	2 cut(s)	349, 965
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	6 cut(s)	561, 610, 678, 819, 924, 1083
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	554, 735
Bst4CI	ACNGT	2 cut(s)	265, 871
BstDEI	CTNAG	4 cut(s)	119, 446, 851, 998
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	2 cut(s)	477, 730
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	6 cut(s)	564, 613, 681, 822, 927, 1086
BstMAI	GTCTC	1 cut(s)	596
BstMBI	GATC	6 cut(s)	561, 610, 678, 819, 924, 1083
BstMWI	GCNNNNNNNGC	1 cut(s)	1104
BstNI	CCWGG	2 cut(s)	554, 735
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	552, 733
BstSFI	CTRYAG	1 cut(s)	893
BstSLI	GKGCMC	1 cut(s)	813
BstV1I	GCAGC	3 cut(s)	727, 907, 918
BstV2I	GAAGAC	2 cut(s)	482, 865
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	235, 373
BtgZI	GCGATG	1 cut(s)	953
BtsCI	GGATG	2 cut(s)	477, 730
BtsIMutI	CAGTG	1 cut(s)	270
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	1 cut(s)	740
Cfr13I	GGNCC	2 cut(s)	190, 371
Csp6I	GTAC	2 cut(s)	619, 855
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	7 cut(s)	56, 379, 390, 586, 686, 775, 779
CviQI	GTAC	2 cut(s)	619, 855
DdeI	CTNAG	4 cut(s)	119, 446, 851, 998
DpnI	GATC	6 cut(s)	563, 612, 680, 821, 926, 1085
DpnII	GATC	6 cut(s)	561, 610, 678, 819, 924, 1083
DraIII	CACNNNGTG	1 cut(s)	817
EaeI	YGGCCR	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	935
Eco81I	CCTNAGG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	552, 733
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	2 cut(s)	456, 780
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	7 cut(s)	59, 382, 393, 589, 689, 778, 782
FalI	AAGNNNNNCTT	4 cut(s)	409, 441, 521, 553
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	7 cut(s)	55, 378, 389, 585, 685, 774, 778
FauNDI	CATATG	1 cut(s)	752
FblI	GTMKAC	1 cut(s)	946
Fnu4HI	GCNGC	3 cut(s)	741, 896, 932
FokI	GGATG	2 cut(s)	484, 717
Fsp4HI	GCNGC	3 cut(s)	741, 896, 932
FspBI	CTAG	2 cut(s)	883, 992
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	3 cut(s)	741, 896, 932
GsaI	CCCAGC	1 cut(s)	1080
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	741
HaeIII	GGCC	2 cut(s)	235, 373
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	7 cut(s)	59, 382, 393, 589, 689, 778, 782
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HinfI	GANTC	6 cut(s)	248, 393, 422, 485, 756, 847
HphI	GGTGA	2 cut(s)	829, 1014
Hpy166II	GTNNAC	4 cut(s)	221, 270, 811, 947
Hpy188I	TCNGA	8 cut(s)	165, 447, 576, 615, 761, 838, 852, 987
Hpy188III	TCNNGA	4 cut(s)	309, 565, 586, 725
Hpy8I	GTNNAC	4 cut(s)	221, 270, 811, 947
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	2 cut(s)	265, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1104
HpyF3I	CTNAG	4 cut(s)	119, 446, 851, 998
Hsp92II	CATG	7 cut(s)	59, 382, 393, 589, 689, 778, 782
HspAI	GCGC	1 cut(s)	738
KflI	GGGWCCC	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	561, 610, 678, 819, 924, 1083
LmnI	GCTCC	2 cut(s)	14, 717
Lsp1109I	GCAGC	3 cut(s)	727, 907, 918
LweI	GCATC	4 cut(s)	60, 302, 591, 739
MaeI	CTAG	2 cut(s)	883, 992
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	6 cut(s)	563, 612, 680, 821, 926, 1085
MboI	GATC	6 cut(s)	561, 610, 678, 819, 924, 1083
MboII	GAAGA	7 cut(s)	453, 487, 518, 639, 865, 928, 1078
MfeI	CAATTG	1 cut(s)	641
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	1 cut(s)	813
MlsI	TGGCCA	1 cut(s)	235
MluNI	TGGCCA	1 cut(s)	235
MmeI	TCCRAC	2 cut(s)	225, 483
MnlI	CCTC	8 cut(s)	96, 114, 123, 341, 525, 570, 692, 993
Mox20I	TGGCCA	1 cut(s)	235
Mph1103I	ATGCAT	2 cut(s)	456, 780
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	326
Msp20I	TGGCCA	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	554, 735
MunI	CAATTG	1 cut(s)	641
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	554, 735
MwoI	GCNNNNNNNGC	1 cut(s)	1104
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	6 cut(s)	561, 610, 678, 819, 924, 1083
NlaIII	CATG	7 cut(s)	59, 382, 393, 589, 689, 778, 782
NlaIV	GGNNCC	5 cut(s)	16, 191, 192, 713, 965
NmuCI	GTSAC	1 cut(s)	27
NsiI	ATGCAT	2 cut(s)	456, 780
NspI	RCATGY	1 cut(s)	382
PagI	TCATGA	1 cut(s)	585
PciI	ACATGT	1 cut(s)	378
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	6 cut(s)	248, 393, 422, 485, 756, 847
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	742, 897, 933
PpuMI	RGGWCCY	1 cut(s)	190
PscI	ACATGT	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	552, 733
PspFI	CCCAGC	1 cut(s)	1076
PspGI	CCWGG	2 cut(s)	552, 733
PspN4I	GGNNCC	5 cut(s)	16, 191, 192, 713, 965
PspPI	GGNCC	2 cut(s)	190, 371
PspPPI	RGGWCCY	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	2 cut(s)	620, 856
RsaNI	GTAC	2 cut(s)	619, 855
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	3 cut(s)	741, 896, 932
Sau3AI	GATC	6 cut(s)	561, 610, 678, 819, 924, 1083
Sau96I	GGNCC	2 cut(s)	190, 371
ScrFI	CCNGG	2 cut(s)	554, 735
SduI	GDGCHC	1 cut(s)	813
SetI	ASST	8 cut(s)	120, 141, 482, 581, 800, 933, 1004, 1013
SfaNI	GCATC	4 cut(s)	60, 302, 591, 739
SfcI	CTRYAG	1 cut(s)	893
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	326
SspMI	CTAG	2 cut(s)	883, 992
StyD4I	CCNGG	2 cut(s)	552, 733
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	265, 871
TaqI	TCGA	3 cut(s)	488, 822, 1028
TatI	WGTACW	2 cut(s)	618, 854
TfiI	GAWTC	6 cut(s)	248, 393, 422, 485, 756, 847
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	3 cut(s)	740, 895, 931
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	7 cut(s)	310, 406, 447, 488, 680, 763, 853
TspRI	CASTG	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	190
XagI	CCTNNNNNAGG	1 cut(s)	881
XapI	RAATTY	2 cut(s)	542, 1031
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	946
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	883, 992
Zsp2I	ATGCAT	2 cut(s)	456, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.