FvH4_2g18440

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013546
Physical Location & Seq
Forward (+)
15818311 .. 15820743
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18440.t1

Sequence Viewer

Length: 1125 bp
ATGGTGGAGGTTTCTGAACGAGGGGTGAAGGAGGAGGAGATTGAGCTGGATTTAGGCTTGTCGATCGGAAGCGCCAGTTTTAGAAGATCTGAGAAACCGAAACTCGACGGAGGAGATACGAGGGAGAATGAATATCAAACGGTTGCGGTTGTGAGATCGAGCAGCACGGTGTCGCCGCCGATGACGTTGTCCGAGGCGGAAAGCGACGTTCTGGATCCGCTGGCGAGAAGGGAGATACAGGCGCTGCGGAGGCAAGAGGCCAAGAGGAAGCGAGAGGAGAAGAAGACGAGAGCACTAATCGGAGAACAGCAACAACCGCCGGCGAAAAAGAATGGTGTGTTATCTCAGGACGATAACGCCGGAAACGTTGAGCACCACCATTACCCAGTTGGACCGGTGCAGTACCCGTACGCGCCGGTTCAGTTCATCCCGTACTCAAACGGGTTCGCTTATCCGTGTGTGGTGCCTTGTTGGGCGCCCAACGGCGGCGGCGGTGGTGGTTTCAGGCAGTTTCAGGATTTGGGGAATAACGGGTGCAACCCGGAGCAGAATGGCAAAACGGCGTCGTTGAATAATGGGTCTCCGATTTGTAGCTCCTCTACCGTTTCAGAACATTACAGCGCAGCTTCTCATGAAGGTGGAAGCAGTGATGCAAAAAGCCATTCAAGCCGTTTGAGTGGTTCAATTGGGTCTGACCATACAGCAACCTCTCACTCCATCGAATCTAATCATTATTTGGTGATTCGACCCACCAAAGAAGAACCCGCACCGGAAATTACAGAACCGGTTCCGATTGCGAAACCCATCTCATCTAATGAAGAATGCCCTCCTCCTCCATTGAAAGAAACCAAGATGGAACCTCCAAAACCCAAAACCGAAAATATTAAAAACAGAGAGAAGACTCCTTCGATGCCACAAATGCCGTATGTGTCCACCACCGGAAATGGACCAAATGGGAAAACGGTTCATGGGTTCTTGTATAGATACTCGAAGTCTGATATCAGCATCGTATGCGTCTGCCATGGAAGCACATTCTCCCCGGCTGAGTTTGTGCAGCATGCCGGCGGCGCCGATGTTTCACAGCCTCTCAGGCACATTACAGTAATCCCATCTGCTTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAR Jas

Protein Analysis

375

Amino Acids

40.42

Weight (kDa)

6.24

Isoelectric Point (pI)

65.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 335 - 367 6e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07255
fragaria_vesca FvH4_2g18440 FvH4_2g18440
malus_domestica MD05G1170300.v1.1 MD10G1158500.v1.1
prunus_persica Prupe.8G197500_v2.0.a1
pyrus_communis pycom05g15750
rosa_chinensis RchiOBHm_Chr6g0283921
rosa_laevigata RLG00000012786
rosa_multiflora Rmu_ssc0000442.1_g000021
rosa_roxburghii Rroxscaffold_6G00425120 Rroxscaffold_7G00185060
rosa_rugosa Rorug06G0158500
rosa_samantha Rh6AG271500 Rh6BG272700 Rh6CG273900 Rh6DG266800
rosa_wichuraiana Rw6G023420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 463, 475, 1067
AccII CGCG 1 cut(s) 413
AclI AACGTT 1 cut(s) 366
AclWI GGATC 2 cut(s) 209, 222
AcyI GRCGYC 3 cut(s) 476, 563, 1068
AfaI GTAC 3 cut(s) 404, 410, 434
AfiI CCNNNNNNNGG 1 cut(s) 485
AgeI ACCGGT 2 cut(s) 394, 784
AgsI TTSAA 4 cut(s) 571, 666, 684, 841
AluBI AGCT 3 cut(s) 46, 594, 626
AluI AGCT 3 cut(s) 46, 594, 626
Alw21I GWGCWC 2 cut(s) 295, 375
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 2 cut(s) 209, 222
AlwNI CAGNNNCTG 1 cut(s) 244
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 4 cut(s) 162, 244, 623, 1054
AsiGI ACCGGT 2 cut(s) 394, 784
Asp700I GAANNNNTTC 1 cut(s) 786
AspLEI GCGC 6 cut(s) 74, 244, 415, 478, 623, 1070
AspS9I GGNCC 2 cut(s) 392, 947
AsuC2I CCSGG 2 cut(s) 542, 1040
AsuHPI GGTGA 2 cut(s) 37, 751
AvaII GGWCC 2 cut(s) 392, 947
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 3 cut(s) 463, 475, 1067
BbsI GAAGAC 2 cut(s) 290, 905
Bbv12I GWGCWC 2 cut(s) 295, 375
BbvI GCAGC 4 cut(s) 174, 231, 635, 1066
BccI CCATC 4 cut(s) 725, 812, 847, 1117
BceAI ACGGC 4 cut(s) 499, 576, 654, 907
BcnI CCSGG 2 cut(s) 542, 1040
BcoDI GTCTC 1 cut(s) 585
BfoI RGCGCY 4 cut(s) 75, 245, 479, 1071
BglI GCCNNNNNGGC 1 cut(s) 1090
BglII AGATCT 1 cut(s) 86
BisI GCNGC 8 cut(s) 163, 176, 245, 487, 490, 624, 1055, 1066
BlsI GCNGC 8 cut(s) 164, 177, 246, 488, 491, 625, 1056, 1067
Bme1390I CCNGG 2 cut(s) 542, 1040
Bme18I GGWCC 2 cut(s) 392, 947
BmgT120I GGNCC 2 cut(s) 392, 947
BmiI GGNNCC 6 cut(s) 216, 465, 477, 789, 858, 1069
BmrFI CCNGG 2 cut(s) 542, 1040
BmrI ACTGGG 1 cut(s) 380
BmsI GCATC 3 cut(s) 640, 900, 1014
BmuI ACTGGG 1 cut(s) 380
BpiI GAAGAC 2 cut(s) 290, 905
BpuMI CCSGG 2 cut(s) 542, 1040
BsaHI GRCGYC 3 cut(s) 476, 563, 1068
BsaI GGTCTC 1 cut(s) 585
BsaJI CCNNGG 3 cut(s) 192, 1021, 1038
BsaWI WCCGGW 4 cut(s) 394, 769, 784, 938
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse118I RCCGGY 5 cut(s) 319, 394, 415, 784, 1061
Bse1I ACTGG 2 cut(s) 75, 386
BseDI CCNNGG 3 cut(s) 192, 1021, 1038
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 4 cut(s) 81, 359, 1035, 1102
BseNI ACTGG 2 cut(s) 75, 386
BseRI GAGGAG 7 cut(s) 47, 50, 126, 290, 586, 819, 822
BseXI GCAGC 4 cut(s) 174, 231, 635, 1066
BsgI GTGCAG 2 cut(s) 419, 1073
Bsh1236I CGCG 1 cut(s) 413
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 260
BshNI GGYRCC 3 cut(s) 463, 475, 1067
BshTI ACCGGT 2 cut(s) 394, 784
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 295, 375
BsiWI CGTACG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 585
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 585
Bsp1286I GDGCHC 2 cut(s) 295, 375
Bsp143I GATC 4 cut(s) 63, 86, 155, 214
Bsp19I CCATGG 1 cut(s) 1021
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 4 cut(s) 82, 358, 1036, 1101
BspFNI CGCG 1 cut(s) 413
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 6 cut(s) 216, 465, 477, 789, 858, 1069
BspPI GGATC 2 cut(s) 209, 222
BspT107I GGYRCC 3 cut(s) 463, 475, 1067
BspTNI GGTCTC 1 cut(s) 585
BsrFI RCCGGY 5 cut(s) 319, 394, 415, 784, 1061
BsrI ACTGG 2 cut(s) 75, 386
BssAI RCCGGY 5 cut(s) 319, 394, 415, 784, 1061
BssECI CCNNGG 3 cut(s) 192, 1021, 1038
BssMI GATC 4 cut(s) 63, 86, 155, 214
BssNI GRCGYC 3 cut(s) 476, 563, 1068
BssT1I CCWWGG 1 cut(s) 1021
Bst4CI ACNGT 5 cut(s) 142, 169, 604, 964, 1102
BstACI GRCGYC 3 cut(s) 476, 563, 1068
BstAPI GCANNNNNTGC 1 cut(s) 1011
BstC8I GCNNGC 4 cut(s) 222, 321, 1059, 1063
BstDEI CTNAG 4 cut(s) 90, 345, 1044, 1088
BstDSI CCRYGG 1 cut(s) 1021
BstF5I GGATG 1 cut(s) 426
BstFNI CGCG 1 cut(s) 413
BstH2I RGCGCY 4 cut(s) 75, 245, 479, 1071
BstHHI GCGC 6 cut(s) 74, 244, 415, 478, 623, 1070
BstKTI GATC 4 cut(s) 66, 89, 158, 217
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 4 cut(s) 63, 86, 155, 214
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 8 cut(s) 250, 316, 666, 919, 1011, 1026, 1067, 1090
BstNSI RCATGY 1 cut(s) 1061
BstSCI CCNGG 2 cut(s) 540, 1038
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 4 cut(s) 174, 231, 635, 1066
BstV2I GAAGAC 2 cut(s) 290, 905
BstX2I RGATCY 2 cut(s) 86, 214
BstYI RGATCY 2 cut(s) 86, 214
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 1021
BtsCI GGATG 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 1 cut(s) 652
Cac8I GCNNGC 4 cut(s) 222, 321, 1059, 1063
CaiI CAGNNNCTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 631
CfoI GCGC 6 cut(s) 74, 244, 415, 478, 623, 1070
Cfr10I RCCGGY 5 cut(s) 319, 394, 415, 784, 1061
Cfr13I GGNCC 2 cut(s) 392, 947
CseI GACGC 2 cut(s) 552, 1003
Csp6I GTAC 3 cut(s) 403, 409, 433
CspAI ACCGGT 2 cut(s) 394, 784
CviAII CATG 4 cut(s) 632, 968, 1022, 1058
CviJI RGCY 9 cut(s) 46, 57, 260, 594, 626, 660, 669, 1043, 1084
CviKI_1 RGCY 9 cut(s) 46, 57, 260, 594, 626, 660, 669, 1043, 1084
CviQI GTAC 3 cut(s) 403, 409, 433
DdeI CTNAG 4 cut(s) 90, 345, 1044, 1088
DinI GGCGCC 2 cut(s) 477, 1069
DpnI GATC 4 cut(s) 65, 88, 157, 216
DpnII GATC 4 cut(s) 63, 86, 155, 214
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 1021
Eco31I GGTCTC 1 cut(s) 585
Eco32I GATATC 1 cut(s) 1000
Eco47I GGWCC 2 cut(s) 392, 947
EcoRV GATATC 1 cut(s) 1000
EcoT14I CCWWGG 1 cut(s) 1021
EgeI GGCGCC 2 cut(s) 477, 1069
EheI GGCGCC 2 cut(s) 477, 1069
ErhI CCWWGG 1 cut(s) 1021
FaeI CATG 4 cut(s) 635, 971, 1025, 1061
FaiI YATR 8 cut(s) 633, 699, 927, 969, 981, 1012, 1023, 1059
FatI CATG 4 cut(s) 631, 967, 1021, 1057
FauI CCCGC 1 cut(s) 772
Fnu4HI GCNGC 8 cut(s) 163, 176, 245, 487, 490, 624, 1055, 1066
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 8 cut(s) 163, 176, 245, 487, 490, 624, 1055, 1066
GlaI GCGC 6 cut(s) 73, 243, 414, 477, 622, 1069
GluI GCNGC 8 cut(s) 163, 176, 245, 487, 490, 624, 1055, 1066
HaeII RGCGCY 4 cut(s) 75, 245, 479, 1071
HaeIII GGCC 1 cut(s) 260
HgaI GACGC 2 cut(s) 552, 1003
HhaI GCGC 6 cut(s) 74, 244, 415, 478, 623, 1070
Hin1I GRCGYC 3 cut(s) 476, 563, 1068
Hin1II CATG 4 cut(s) 635, 971, 1025, 1061
Hin6I GCGC 6 cut(s) 72, 242, 413, 476, 621, 1068
HinP1I GCGC 6 cut(s) 72, 242, 413, 476, 621, 1068
HinfI GANTC 3 cut(s) 722, 742, 901
HphI GGTGA 2 cut(s) 37, 751
Hpy166II GTNNAC 1 cut(s) 933
Hpy188III TCNNGA 4 cut(s) 212, 347, 515, 632
Hpy8I GTNNAC 1 cut(s) 933
Hpy99I CGWCG 3 cut(s) 110, 209, 568
HpyAV CCTTC 4 cut(s) 22, 222, 629, 915
HpyCH4III ACNGT 5 cut(s) 142, 169, 604, 964, 1102
HpyCH4IV ACGT 3 cut(s) 185, 207, 366
HpyCH4V TGCA 4 cut(s) 400, 537, 653, 1054
HpyF10VI GCNNNNNNNGC 8 cut(s) 250, 316, 666, 919, 1011, 1026, 1067, 1090
HpyF3I CTNAG 4 cut(s) 90, 345, 1044, 1088
HpySE526I ACGT 3 cut(s) 185, 207, 366
Hsp92I GRCGYC 3 cut(s) 476, 563, 1068
Hsp92II CATG 4 cut(s) 635, 971, 1025, 1061
HspAI GCGC 6 cut(s) 72, 242, 413, 476, 621, 1068
KasI GGCGCC 2 cut(s) 475, 1067
KroI GCCGGC 2 cut(s) 319, 1061
KroNI GCCGGC 2 cut(s) 321, 1063
Kzo9I GATC 4 cut(s) 63, 86, 155, 214
LmnI GCTCC 2 cut(s) 544, 599
Lsp1109I GCAGC 4 cut(s) 174, 231, 635, 1066
LweI GCATC 3 cut(s) 640, 900, 1014
MaeII ACGT 3 cut(s) 185, 207, 366
MalI GATC 4 cut(s) 65, 88, 157, 216
MboI GATC 4 cut(s) 63, 86, 155, 214
MboII GAAGA 6 cut(s) 96, 292, 295, 770, 830, 910
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 86, 214
MhlI GDGCHC 2 cut(s) 295, 375
MluCI AATT 2 cut(s) 684, 774
Mly113I GGCGCC 2 cut(s) 476, 1068
MlyI GAGTC 1 cut(s) 895
MmeI TCCRAC 1 cut(s) 370
MreI CGCCGGCG 1 cut(s) 319
MroNI GCCGGC 2 cut(s) 319, 1061
MroXI GAANNNNTTC 1 cut(s) 786
MseI TTAA 1 cut(s) 885
MslI CAYNNNNRTG 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 542, 1040
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 827
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 8 cut(s) 250, 316, 666, 919, 1011, 1026, 1067, 1090
NaeI GCCGGC 2 cut(s) 321, 1063
NarI GGCGCC 2 cut(s) 476, 1068
NciI CCSGG 2 cut(s) 542, 1040
NcoI CCATGG 1 cut(s) 1021
NdeII GATC 4 cut(s) 63, 86, 155, 214
NgoMIV GCCGGC 2 cut(s) 319, 1061
NlaIII CATG 4 cut(s) 635, 971, 1025, 1061
NlaIV GGNNCC 6 cut(s) 216, 465, 477, 789, 858, 1069
NspI RCATGY 1 cut(s) 1061
PaeI GCATGC 1 cut(s) 1061
PagI TCATGA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 1 cut(s) 827
PdiI GCCGGC 2 cut(s) 321, 1063
PdmI GAANNNNTTC 1 cut(s) 786
PfeI GAWTC 2 cut(s) 722, 742
Pfl23II CGTACG 1 cut(s) 408
PflFI GACNNNGTC 1 cut(s) 187
PinAI ACCGGT 2 cut(s) 394, 784
PkrI GCNGC 8 cut(s) 164, 177, 246, 488, 491, 625, 1056, 1067
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 1 cut(s) 895
PluTI GGCGCC 2 cut(s) 479, 1071
PpsI GAGTC 1 cut(s) 895
Psp1406I AACGTT 1 cut(s) 366
PspLI CGTACG 1 cut(s) 408
PspN4I GGNNCC 6 cut(s) 216, 465, 477, 789, 858, 1069
PspPI GGNCC 2 cut(s) 392, 947
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 86, 214
PsyI GACNNNGTC 1 cut(s) 187
PvuI CGATCG 1 cut(s) 66
RsaI GTAC 3 cut(s) 404, 410, 434
RsaNI GTAC 3 cut(s) 403, 409, 433
RseI CAYNNNNRTG 1 cut(s) 636
SaqAI TTAA 1 cut(s) 885
SatI GCNGC 8 cut(s) 163, 176, 245, 487, 490, 624, 1055, 1066
Sau3AI GATC 4 cut(s) 63, 86, 155, 214
Sau96I GGNCC 2 cut(s) 392, 947
SchI GAGTC 1 cut(s) 895
ScrFI CCNGG 2 cut(s) 542, 1040
SduI GDGCHC 2 cut(s) 295, 375
SfaNI GCATC 3 cut(s) 640, 900, 1014
SfoI GGCGCC 2 cut(s) 477, 1069
SgrAI CRCCGGYG 1 cut(s) 319
SinI GGWCC 2 cut(s) 392, 947
SmiMI CAYNNNNRTG 1 cut(s) 636
SphI GCATGC 1 cut(s) 1061
Sse9I AATT 2 cut(s) 684, 774
SspDI GGCGCC 2 cut(s) 475, 1067
SspI AATATT 1 cut(s) 883
StyD4I CCNGG 2 cut(s) 540, 1038
StyI CCWWGG 1 cut(s) 1021
TaaI ACNGT 5 cut(s) 142, 169, 604, 964, 1102
TaiI ACGT 3 cut(s) 188, 210, 369
TaqI TCGA 7 cut(s) 62, 105, 158, 720, 745, 908, 989
TasI AATT 2 cut(s) 684, 774
TauI GCSGC 4 cut(s) 178, 489, 492, 1068
TfiI GAWTC 2 cut(s) 722, 742
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TscAI CASTG 1 cut(s) 652
TseI GCWGC 4 cut(s) 162, 244, 623, 1054
TspDTI ATGAA 5 cut(s) 144, 415, 648, 831, 956
TspGWI ACGGA 2 cut(s) 123, 444
TspRI CASTG 1 cut(s) 652
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 392, 947
XceI RCATGY 1 cut(s) 1061
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.