TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07255 |
| fragaria_vesca | FvH4_2g18440 FvH4_2g18440 |
| malus_domestica | MD05G1170300.v1.1 MD10G1158500.v1.1 |
| prunus_persica | Prupe.8G197500_v2.0.a1 |
| pyrus_communis | pycom05g15750 |
| rosa_chinensis | RchiOBHm_Chr6g0283921 |
| rosa_laevigata | RLG00000012786 |
| rosa_multiflora | Rmu_ssc0000442.1_g000021 |
| rosa_roxburghii | Rroxscaffold_6G00425120 Rroxscaffold_7G00185060 |
| rosa_rugosa | Rorug06G0158500 |
| rosa_samantha | Rh6AG271500 Rh6BG272700 Rh6CG273900 Rh6DG266800 |
| rosa_wichuraiana | Rw6G023420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 575 |
| AccII | CGCG | 4 cut(s) | 170, 237, 446, 458 |
| AciI | CCGC | 8 cut(s) | 193, 211, 376, 410, 480, 486, 489, 585 |
| AclWI | GGATC | 3 cut(s) | 129, 193, 1189 |
| AcsI | RAATTY | 3 cut(s) | 517, 808, 1136 |
| AcyI | GRCGYC | 2 cut(s) | 149, 572 |
| AfaI | GTAC | 5 cut(s) | 401, 407, 449, 928, 1070 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 382, 482, 1029 |
| AgsI | TTSAA | 8 cut(s) | 28, 44, 389, 610, 736, 747, 879, 937 |
| AjnI | CCWGG | 1 cut(s) | 201 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 572, 604 |
| AluBI | AGCT | 5 cut(s) | 630, 714, 785, 1074, 1133 |
| AluI | AGCT | 5 cut(s) | 630, 714, 785, 1074, 1133 |
| Alw26I | GTCTC | 4 cut(s) | 314, 683, 1024, 1174 |
| AlwI | GGATC | 3 cut(s) | 129, 193, 1189 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 208, 1177 |
| AoxI | GGCC | 5 cut(s) | 267, 497, 706, 765, 1036 |
| ApeKI | GCWGC | 2 cut(s) | 208, 1144 |
| ApoI | RAATTY | 3 cut(s) | 517, 808, 1136 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 440, 700 |
| AspLEI | GCGC | 7 cut(s) | 170, 172, 208, 237, 458, 511, 659 |
| AspS9I | GGNCC | 5 cut(s) | 268, 615, 766, 955, 1037 |
| AsuC2I | CCSGG | 2 cut(s) | 21, 383 |
| AsuHPI | GGTGA | 1 cut(s) | 1119 |
| AvaII | GGWCC | 2 cut(s) | 615, 955 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1149, 1182 |
| BanII | GRGCYC | 3 cut(s) | 21, 375, 475 |
| BbvI | GCAGC | 2 cut(s) | 195, 1156 |
| BccI | CCATC | 2 cut(s) | 899, 1207 |
| BceAI | ACGGC | 6 cut(s) | 124, 162, 376, 448, 454, 484 |
| BciT130I | CCWGG | 1 cut(s) | 203 |
| BclI | TGATCA | 1 cut(s) | 646 |
| BcnI | CCSGG | 2 cut(s) | 21, 383 |
| BcoDI | GTCTC | 4 cut(s) | 314, 683, 1024, 1174 |
| BfoI | RGCGCY | 1 cut(s) | 209 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 705 |
| BisI | GCNGC | 3 cut(s) | 209, 487, 1145 |
| BlsI | GCNGC | 3 cut(s) | 210, 488, 1146 |
| BmcAI | AGTACT | 1 cut(s) | 928 |
| Bme1390I | CCNGG | 3 cut(s) | 21, 203, 383 |
| Bme18I | GGWCC | 2 cut(s) | 615, 955 |
| BmgT120I | GGNCC | 5 cut(s) | 268, 615, 766, 955, 1037 |
| BmiI | GGNNCC | 8 cut(s) | 18, 159, 372, 474, 616, 617, 837, 957 |
| BmrFI | CCNGG | 3 cut(s) | 21, 203, 383 |
| BmrI | ACTGGG | 1 cut(s) | 982 |
| BmsI | GCATC | 1 cut(s) | 450 |
| BmuI | ACTGGG | 1 cut(s) | 982 |
| BpmI | CTGGAG | 1 cut(s) | 1173 |
| BpuEI | CTTGAG | 1 cut(s) | 798 |
| BpuMI | CCSGG | 2 cut(s) | 21, 383 |
| BsaHI | GRCGYC | 2 cut(s) | 149, 572 |
| BsaI | GGTCTC | 1 cut(s) | 683 |
| BsaJI | CCNNGG | 4 cut(s) | 253, 762, 1026, 1111 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 913, 943 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 382, 482, 1029 |
| Bse118I | RCCGGY | 3 cut(s) | 295, 391, 412 |
| Bse1I | ACTGG | 3 cut(s) | 837, 872, 988 |
| Bse3DI | GCAATG | 1 cut(s) | 826 |
| BseBI | CCWGG | 1 cut(s) | 203 |
| BseDI | CCNNGG | 4 cut(s) | 253, 762, 1026, 1111 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 382, 482, 1029 |
| BseMI | GCAATG | 1 cut(s) | 826 |
| BseMII | CTCAG | 4 cut(s) | 410, 1077, 1169, 1184 |
| BseNI | ACTGG | 3 cut(s) | 837, 872, 988 |
| BsePI | GCGCGC | 1 cut(s) | 168 |
| BseRI | GAGGAG | 4 cut(s) | 47, 50, 560, 622 |
| BseXI | GCAGC | 2 cut(s) | 195, 1156 |
| BseYI | CCCAGC | 2 cut(s) | 468, 476 |
| BsgI | GTGCAG | 3 cut(s) | 437, 1012, 1163 |
| Bsh1236I | CGCG | 4 cut(s) | 170, 237, 446, 458 |
| BshFI | GGCC | 5 cut(s) | 269, 499, 708, 767, 1038 |
| BsiSI | CCGG | 6 cut(s) | 21, 161, 296, 383, 392, 413 |
| BslFI | GGGAC | 1 cut(s) | 601 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 382, 482, 1029 |
| BsmAI | GTCTC | 4 cut(s) | 314, 683, 1024, 1174 |
| BsmBI | CGTCTC | 1 cut(s) | 314 |
| BsmFI | GGGAC | 1 cut(s) | 601 |
| BsnI | GGCC | 5 cut(s) | 269, 499, 708, 767, 1038 |
| Bso31I | GGTCTC | 1 cut(s) | 683 |
| Bsp1286I | GDGCHC | 3 cut(s) | 21, 375, 475 |
| Bsp1407I | TGTACA | 1 cut(s) | 1068 |
| Bsp143I | GATC | 6 cut(s) | 121, 198, 300, 646, 1089, 1194 |
| Bsp19I | CCATGG | 1 cut(s) | 1111 |
| BspACI | CCGC | 8 cut(s) | 193, 211, 376, 410, 480, 486, 489, 585 |
| BspANI | GGCC | 5 cut(s) | 269, 499, 708, 767, 1038 |
| BspCNI | CTCAG | 4 cut(s) | 409, 1078, 1170, 1183 |
| BspFNI | CGCG | 4 cut(s) | 170, 237, 446, 458 |
| BspHI | TCATGA | 1 cut(s) | 667 |
| BspLI | GGNNCC | 8 cut(s) | 18, 159, 372, 474, 616, 617, 837, 957 |
| BspPI | GGATC | 3 cut(s) | 129, 193, 1189 |
| BspQI | GCTCTTC | 1 cut(s) | 273 |
| BspTNI | GGTCTC | 1 cut(s) | 683 |
| BsrDI | GCAATG | 1 cut(s) | 826 |
| BsrFI | RCCGGY | 3 cut(s) | 295, 391, 412 |
| BsrGI | TGTACA | 1 cut(s) | 1068 |
| BsrI | ACTGG | 3 cut(s) | 837, 872, 988 |
| BssAI | RCCGGY | 3 cut(s) | 295, 391, 412 |
| BssECI | CCNNGG | 4 cut(s) | 253, 762, 1026, 1111 |
| BssHII | GCGCGC | 1 cut(s) | 168 |
| BssMI | GATC | 6 cut(s) | 121, 198, 300, 646, 1089, 1194 |
| BssNI | GRCGYC | 2 cut(s) | 149, 572 |
| BssT1I | CCWWGG | 2 cut(s) | 762, 1111 |
| Bst2UI | CCWGG | 1 cut(s) | 203 |
| Bst4CI | ACNGT | 2 cut(s) | 640, 1192 |
| Bst6I | CTCTTC | 5 cut(s) | 221, 234, 239, 273, 1005 |
| BstACI | GRCGYC | 2 cut(s) | 149, 572 |
| BstAUI | TGTACA | 1 cut(s) | 1068 |
| BstC8I | GCNNGC | 2 cut(s) | 170, 1149 |
| BstDEI | CTNAG | 4 cut(s) | 396, 1086, 1170, 1178 |
| BstDSI | CCRYGG | 2 cut(s) | 1026, 1111 |
| BstFNI | CGCG | 4 cut(s) | 170, 237, 446, 458 |
| BstH2I | RGCGCY | 1 cut(s) | 209 |
| BstHHI | GCGC | 7 cut(s) | 170, 172, 208, 237, 458, 511, 659 |
| BstKTI | GATC | 6 cut(s) | 124, 201, 303, 649, 1092, 1197 |
| BstMAI | GTCTC | 4 cut(s) | 314, 683, 1024, 1174 |
| BstMBI | GATC | 6 cut(s) | 121, 198, 300, 646, 1089, 1194 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 190, 214, 289, 486, 705, 1116 |
| BstNI | CCWGG | 1 cut(s) | 203 |
| BstNSI | RCATGY | 1 cut(s) | 1151 |
| BstSCI | CCNGG | 3 cut(s) | 19, 201, 381 |
| BstUI | CGCG | 4 cut(s) | 170, 237, 446, 458 |
| BstV1I | GCAGC | 2 cut(s) | 195, 1156 |
| BstX2I | RGATCY | 1 cut(s) | 198 |
| BstYI | RGATCY | 1 cut(s) | 198 |
| BsuRI | GGCC | 5 cut(s) | 269, 499, 708, 767, 1038 |
| BtgI | CCRYGG | 2 cut(s) | 1026, 1111 |
| BtgZI | GCGATG | 1 cut(s) | 473 |
| BtsI | GCAGTG | 1 cut(s) | 691 |
| BtsIMutI | CAGTG | 3 cut(s) | 691, 995, 1158 |
| Cac8I | GCNNGC | 2 cut(s) | 170, 1149 |
| CaiI | CAGNNNCTG | 2 cut(s) | 208, 1177 |
| CciI | TCATGA | 1 cut(s) | 667 |
| CfoI | GCGC | 7 cut(s) | 170, 172, 208, 237, 458, 511, 659 |
| Cfr10I | RCCGGY | 3 cut(s) | 295, 391, 412 |
| Cfr13I | GGNCC | 5 cut(s) | 268, 615, 766, 955, 1037 |
| CseI | GACGC | 1 cut(s) | 138 |
| Csp6I | GTAC | 5 cut(s) | 400, 406, 448, 927, 1069 |
| CviAII | CATG | 4 cut(s) | 668, 1058, 1112, 1148 |
| CviQI | GTAC | 5 cut(s) | 400, 406, 448, 927, 1069 |
| DdeI | CTNAG | 4 cut(s) | 396, 1086, 1170, 1178 |
| DpnI | GATC | 6 cut(s) | 123, 200, 302, 648, 1091, 1196 |
| DpnII | GATC | 6 cut(s) | 121, 198, 300, 646, 1089, 1194 |
| DraI | TTTAAA | 1 cut(s) | 802 |
| Eam1104I | CTCTTC | 5 cut(s) | 221, 234, 239, 273, 1005 |
| EarI | CTCTTC | 5 cut(s) | 221, 234, 239, 273, 1005 |
| EciI | GGCGGA | 1 cut(s) | 600 |
| Eco130I | CCWWGG | 2 cut(s) | 762, 1111 |
| Eco24I | GRGCYC | 3 cut(s) | 21, 375, 475 |
| Eco31I | GGTCTC | 1 cut(s) | 683 |
| Eco47I | GGWCC | 2 cut(s) | 615, 955 |
| EcoO109I | RGGNCCY | 1 cut(s) | 615 |
| EcoRII | CCWGG | 1 cut(s) | 201 |
| EcoT14I | CCWWGG | 2 cut(s) | 762, 1111 |
| EcoT38I | GRGCYC | 3 cut(s) | 21, 375, 475 |
| ErhI | CCWWGG | 2 cut(s) | 762, 1111 |
| Esp3I | CGTCTC | 1 cut(s) | 314 |
| FaeI | CATG | 4 cut(s) | 671, 1061, 1115, 1151 |
| FaiI | YATR | 9 cut(s) | 353, 430, 513, 669, 1017, 1059, 1113, 1149, 1187 |
| FaqI | GGGAC | 1 cut(s) | 601 |
| FatI | CATG | 4 cut(s) | 667, 1057, 1111, 1147 |
| FauI | CCCGC | 3 cut(s) | 186, 383, 417 |
| FbaI | TGATCA | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 3 cut(s) | 209, 487, 1145 |
| FriOI | GRGCYC | 3 cut(s) | 21, 375, 475 |
| Fsp4HI | GCNGC | 3 cut(s) | 209, 487, 1145 |
| GlaI | GCGC | 7 cut(s) | 169, 171, 207, 236, 457, 510, 658 |
| GluI | GCNGC | 3 cut(s) | 209, 487, 1145 |
| GsaI | CCCAGC | 2 cut(s) | 472, 480 |
| GsuI | CTGGAG | 1 cut(s) | 1173 |
| HaeII | RGCGCY | 1 cut(s) | 209 |
| HaeIII | GGCC | 5 cut(s) | 269, 499, 708, 767, 1038 |
| HapII | CCGG | 6 cut(s) | 21, 161, 296, 383, 392, 413 |
| HgaI | GACGC | 1 cut(s) | 138 |
| HhaI | GCGC | 7 cut(s) | 170, 172, 208, 237, 458, 511, 659 |
| Hin1I | GRCGYC | 2 cut(s) | 149, 572 |
| Hin1II | CATG | 4 cut(s) | 671, 1061, 1115, 1151 |
| Hin6I | GCGC | 7 cut(s) | 168, 170, 206, 235, 456, 509, 657 |
| HinP1I | GCGC | 7 cut(s) | 168, 170, 206, 235, 456, 509, 657 |
| HincII | GTYRAC | 1 cut(s) | 106 |
| HindII | GTYRAC | 1 cut(s) | 106 |
| HinfI | GANTC | 2 cut(s) | 179, 908 |
| HpaII | CCGG | 6 cut(s) | 21, 161, 296, 383, 392, 413 |
| HphI | GGTGA | 1 cut(s) | 1119 |
| Hpy166II | GTNNAC | 2 cut(s) | 106, 337 |
| Hpy188III | TCNNGA | 3 cut(s) | 176, 304, 668 |
| Hpy8I | GTNNAC | 2 cut(s) | 106, 337 |
| Hpy99I | CGWCG | 4 cut(s) | 154, 157, 577, 580 |
| HpyAV | CCTTC | 3 cut(s) | 252, 665, 931 |
| HpyCH4III | ACNGT | 2 cut(s) | 640, 1192 |
| HpyCH4IV | ACGT | 3 cut(s) | 327, 339, 572 |
| HpyCH4V | TGCA | 6 cut(s) | 97, 418, 914, 965, 993, 1144 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 190, 214, 289, 486, 705, 1116 |
| HpyF3I | CTNAG | 4 cut(s) | 396, 1086, 1170, 1178 |
| HpySE526I | ACGT | 3 cut(s) | 327, 339, 572 |
| Hsp92I | GRCGYC | 2 cut(s) | 149, 572 |
| Hsp92II | CATG | 4 cut(s) | 671, 1061, 1115, 1151 |
| HspAI | GCGC | 7 cut(s) | 168, 170, 206, 235, 456, 509, 657 |
| KflI | GGGWCCC | 1 cut(s) | 615 |
| Ksp22I | TGATCA | 1 cut(s) | 646 |
| Kzo9I | GATC | 6 cut(s) | 121, 198, 300, 646, 1089, 1194 |
| LguI | GCTCTTC | 1 cut(s) | 273 |
| LmnI | GCTCC | 6 cut(s) | 16, 157, 370, 478, 635, 841 |
| Lsp1109I | GCAGC | 2 cut(s) | 195, 1156 |
| LweI | GCATC | 1 cut(s) | 450 |
| MaeII | ACGT | 3 cut(s) | 327, 339, 572 |
| MalI | GATC | 6 cut(s) | 123, 200, 302, 648, 1091, 1196 |
| MboI | GATC | 6 cut(s) | 121, 198, 300, 646, 1089, 1194 |
| MboII | GAAGA | 6 cut(s) | 238, 251, 256, 290, 857, 992 |
| MflI | RGATCY | 1 cut(s) | 198 |
| MhlI | GDGCHC | 3 cut(s) | 21, 375, 475 |
| MluCI | AATT | 6 cut(s) | 92, 517, 808, 942, 1053, 1136 |
| MmeI | TCCRAC | 2 cut(s) | 135, 816 |
| MroXI | GAANNNNTTC | 2 cut(s) | 440, 700 |
| MseI | TTAA | 2 cut(s) | 801, 920 |
| MslI | CAYNNNNRTG | 2 cut(s) | 672, 1190 |
| MspA1I | CMGCKG | 2 cut(s) | 480, 1133 |
| MspI | CCGG | 6 cut(s) | 21, 161, 296, 383, 392, 413 |
| MspR9I | CCNGG | 3 cut(s) | 21, 203, 383 |
| MvaI | CCWGG | 1 cut(s) | 203 |
| MvnI | CGCG | 4 cut(s) | 170, 237, 446, 458 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 190, 214, 289, 486, 705, 1116 |
| NciI | CCSGG | 2 cut(s) | 21, 383 |
| NcoI | CCATGG | 1 cut(s) | 1111 |
| NdeII | GATC | 6 cut(s) | 121, 198, 300, 646, 1089, 1194 |
| NlaIII | CATG | 4 cut(s) | 671, 1061, 1115, 1151 |
| NlaIV | GGNNCC | 8 cut(s) | 18, 159, 372, 474, 616, 617, 837, 957 |
| NmeAIII | GCCGAG | 1 cut(s) | 278 |
| NspI | RCATGY | 1 cut(s) | 1151 |
| PaeI | GCATGC | 1 cut(s) | 1151 |
| PagI | TCATGA | 1 cut(s) | 667 |
| PauI | GCGCGC | 1 cut(s) | 168 |
| PciSI | GCTCTTC | 1 cut(s) | 273 |
| PdmI | GAANNNNTTC | 2 cut(s) | 440, 700 |
| PfeI | GAWTC | 2 cut(s) | 179, 908 |
| PflFI | GACNNNGTC | 1 cut(s) | 574 |
| PkrI | GCNGC | 3 cut(s) | 210, 488, 1146 |
| PpuMI | RGGWCCY | 1 cut(s) | 615 |
| Psp5II | RGGWCCY | 1 cut(s) | 615 |
| Psp6I | CCWGG | 1 cut(s) | 201 |
| PspFI | CCCAGC | 2 cut(s) | 468, 476 |
| PspGI | CCWGG | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 8 cut(s) | 18, 159, 372, 474, 616, 617, 837, 957 |
| PspPI | GGNCC | 5 cut(s) | 268, 615, 766, 955, 1037 |
| PspPPI | RGGWCCY | 1 cut(s) | 615 |
| PstNI | CAGNNNCTG | 2 cut(s) | 208, 1177 |
| PsuI | RGATCY | 1 cut(s) | 198 |
| PsyI | GACNNNGTC | 1 cut(s) | 574 |
| PteI | GCGCGC | 1 cut(s) | 168 |
| PvuII | CAGCTG | 1 cut(s) | 1133 |
| RsaI | GTAC | 5 cut(s) | 401, 407, 449, 928, 1070 |
| RsaNI | GTAC | 5 cut(s) | 400, 406, 448, 927, 1069 |
| RseI | CAYNNNNRTG | 2 cut(s) | 672, 1190 |
| SapI | GCTCTTC | 1 cut(s) | 273 |
| SaqAI | TTAA | 2 cut(s) | 801, 920 |
| SatI | GCNGC | 3 cut(s) | 209, 487, 1145 |
| Sau3AI | GATC | 6 cut(s) | 121, 198, 300, 646, 1089, 1194 |
| Sau96I | GGNCC | 5 cut(s) | 268, 615, 766, 955, 1037 |
| ScaI | AGTACT | 1 cut(s) | 928 |
| ScrFI | CCNGG | 3 cut(s) | 21, 203, 383 |
| SduI | GDGCHC | 3 cut(s) | 21, 375, 475 |
| SfaNI | GCATC | 1 cut(s) | 450 |
| SgrAI | CRCCGGYG | 1 cut(s) | 412 |
| SinI | GGWCC | 2 cut(s) | 615, 955 |
| SmiI | ATTTAAAT | 1 cut(s) | 802 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 672, 1190 |
| SmlI | CTYRAG | 1 cut(s) | 813 |
| SmoI | CTYRAG | 1 cut(s) | 813 |
| SphI | GCATGC | 1 cut(s) | 1151 |
| Sse9I | AATT | 6 cut(s) | 92, 517, 808, 942, 1053, 1136 |
| SsiI | CCGC | 8 cut(s) | 193, 211, 376, 410, 480, 486, 489, 585 |
| StyD4I | CCNGG | 3 cut(s) | 19, 201, 381 |
| StyI | CCWWGG | 2 cut(s) | 762, 1111 |
| SwaI | ATTTAAAT | 1 cut(s) | 802 |
| TaaI | ACNGT | 2 cut(s) | 640, 1192 |
| TaiI | ACGT | 3 cut(s) | 330, 342, 575 |
| TaqI | TCGA | 2 cut(s) | 48, 578 |
| TasI | AATT | 6 cut(s) | 92, 517, 808, 942, 1053, 1136 |
| TatI | WGTACW | 2 cut(s) | 926, 1068 |
| TauI | GCSGC | 1 cut(s) | 489 |
| TfiI | GAWTC | 2 cut(s) | 179, 908 |
| Tru1I | TTAA | 2 cut(s) | 801, 920 |
| Tru9I | TTAA | 2 cut(s) | 801, 920 |
| TscAI | CASTG | 3 cut(s) | 691, 995, 1165 |
| TseI | GCWGC | 2 cut(s) | 208, 1144 |
| TspDTI | ATGAA | 3 cut(s) | 368, 684, 1046 |
| TspGWI | ACGGA | 3 cut(s) | 91, 383, 557 |
| TspRI | CASTG | 3 cut(s) | 691, 995, 1165 |
| Tth111I | GACNNNGTC | 1 cut(s) | 574 |
| VpaK11BI | GGWCC | 2 cut(s) | 615, 955 |
| XapI | RAATTY | 3 cut(s) | 517, 808, 1136 |
| XceI | RCATGY | 1 cut(s) | 1151 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 737 |
| XmnI | GAANNNNTTC | 2 cut(s) | 440, 700 |
| ZraI | GACGTC | 1 cut(s) | 573 |
| ZrmI | AGTACT | 1 cut(s) | 928 |