Rroxscaffold_6G00425120

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013546
Physical Location & Seq
Reverse (-)
46117813 .. 46128560
10748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425120.1

Sequence Viewer

Length: 378 bp
ATGGAAAATAGAGATGTCACGAAAGACGCGCGCGGGACTAGAGCTTGGTTGCAAGTATCTCAGCAATCAAGTGTCACAGCTACCTCTCACTCAATCGAATCTAATTCCAGAGGTAATGAAAATTTGGTTTTTCAACCCAAAGAAGAGCTCGCACCAGAAATTACAGAACCGGTTCAGATTTCGAACCAAAGTCCTCCTACTCCATCCAAGGAAACCAAGACGGAGCCTCCAAAACCTCAAACTGAGAATACCAAAAACACCCAGAAGAGCCCTTCCATGGCACAAATGCCAATCCAGAATAGCAGTAAAAGGAATCCAGCCAAGATGGTAAGGAAAGGAGGGCCTTGGGGAGCATCACCACTTTCATACCCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAR Jas

Protein Analysis

125

Amino Acids

13.73

Weight (kDa)

9.57

Isoelectric Point (pI)

74.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07255
fragaria_vesca FvH4_2g18440 FvH4_2g18440
malus_domestica MD05G1170300.v1.1 MD10G1158500.v1.1
prunus_persica Prupe.8G197500_v2.0.a1
pyrus_communis pycom05g15750
rosa_chinensis RchiOBHm_Chr6g0283921
rosa_laevigata RLG00000012786
rosa_multiflora Rmu_ssc0000442.1_g000021
rosa_roxburghii Rroxscaffold_6G00425120 Rroxscaffold_7G00185060
rosa_rugosa Rorug06G0158500
rosa_samantha Rh6AG271500 Rh6BG272700 Rh6CG273900 Rh6DG266800
rosa_wichuraiana Rw6G023420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 29, 31, 33
AciI CCGC 2 cut(s) 33, 372
AcsI RAATTY 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 277
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 134
AluBI AGCT 3 cut(s) 44, 80, 148
AluI AGCT 3 cut(s) 44, 80, 148
Alw21I GWGCWC 1 cut(s) 150
AoxI GGCC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 121
AsiGI ACCGGT 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 2 cut(s) 31, 33
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 348
AsuII TTCGAA 1 cut(s) 182
BanII GRGCYC 2 cut(s) 150, 272
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 211, 319
BfaI CTAG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 362
Bpu14I TTCGAA 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 207, 276, 344
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 1 cut(s) 169
BseDI CCNNGG 3 cut(s) 207, 276, 344
BseGI GGATG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 74, 234
BsePI GCGCGC 1 cut(s) 29
Bsh1236I CGCG 3 cut(s) 29, 31, 33
BshFI GGCC 1 cut(s) 343
BshTI ACCGGT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 150, 272
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 33, 372
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 2 cut(s) 73, 235
BspFNI CGCG 3 cut(s) 29, 31, 33
BspLI GGNNCC 1 cut(s) 225
BspQI GCTCTTC 2 cut(s) 138, 260
BspT104I TTCGAA 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 3 cut(s) 207, 276, 344
BssHII GCGCGC 1 cut(s) 29
BssT1I CCWWGG 3 cut(s) 207, 276, 344
Bst6I CTCTTC 2 cut(s) 138, 260
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 31, 150
BstDEI CTNAG 2 cut(s) 60, 243
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 203
BstFNI CGCG 3 cut(s) 29, 31, 33
BstHHI GCGC 2 cut(s) 31, 33
BstUI CGCG 3 cut(s) 29, 31, 33
BsuRI GGCC 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 31, 150
CfoI GCGC 2 cut(s) 31, 33
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 341
CseI GACGC 1 cut(s) 35
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 1 cut(s) 277
CviJI RGCY 7 cut(s) 44, 80, 148, 226, 270, 320, 343
CviKI_1 RGCY 7 cut(s) 44, 80, 148, 226, 270, 320, 343
DdeI CTNAG 2 cut(s) 60, 243
Eam1104I CTCTTC 2 cut(s) 138, 260
EarI CTCTTC 2 cut(s) 138, 260
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 3 cut(s) 207, 276, 344
Eco24I GRGCYC 2 cut(s) 150, 272
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 341
EcoT14I CCWWGG 3 cut(s) 207, 276, 344
EcoT38I GRGCYC 2 cut(s) 150, 272
ErhI CCWWGG 3 cut(s) 207, 276, 344
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 278, 367
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 276
FauI CCCGC 1 cut(s) 26
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 2 cut(s) 150, 272
FspBI CTAG 1 cut(s) 39
GlaI GCGC 2 cut(s) 30, 32
HaeIII GGCC 1 cut(s) 343
HapII CCGG 1 cut(s) 170
HgaI GACGC 1 cut(s) 35
HhaI GCGC 2 cut(s) 31, 33
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 2 cut(s) 29, 31
HinP1I GCGC 2 cut(s) 29, 31
HinfI GANTC 2 cut(s) 98, 313
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 348
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 19, 108, 295
HpyAV CCTTC 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 60, 243
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 2 cut(s) 29, 31
LguI GCTCTTC 2 cut(s) 138, 260
LmnI GCTCC 2 cut(s) 223, 350
LpnPI CCDG 6 cut(s) 121, 168, 183, 275, 308, 330
LweI GCATC 1 cut(s) 362
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 16, 73
MauBI CGCGCGCG 1 cut(s) 29
MboII GAAGA 2 cut(s) 155, 277
MhlI GDGCHC 2 cut(s) 150, 272
MluCI AATT 3 cut(s) 103, 121, 159
MnlI CCTC 6 cut(s) 94, 104, 204, 237, 246, 332
MroXI GAANNNNTTC 1 cut(s) 171
MspI CCGG 1 cut(s) 170
MvnI CGCG 3 cut(s) 29, 31, 33
NcoI CCATGG 1 cut(s) 276
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 16, 73
NspV TTCGAA 1 cut(s) 182
PauI GCGCGC 1 cut(s) 29
PciSI GCTCTTC 2 cut(s) 138, 260
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 98, 313
PinAI ACCGGT 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 341
PteI GCGCGC 1 cut(s) 29
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 2 cut(s) 138, 260
Sau96I GGNCC 1 cut(s) 341
SduI GDGCHC 2 cut(s) 150, 272
SetI ASST 6 cut(s) 46, 82, 86, 115, 150, 238
SfaNI GCATC 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 182
Sse9I AATT 3 cut(s) 103, 121, 159
SsiI CCGC 2 cut(s) 33, 372
SspMI CTAG 1 cut(s) 39
SstI GAGCTC 1 cut(s) 150
StyI CCWWGG 3 cut(s) 207, 276, 344
TaqI TCGA 2 cut(s) 96, 182
TasI AATT 3 cut(s) 103, 121, 159
TfiI GAWTC 2 cut(s) 98, 313
TseFI GTSAC 2 cut(s) 16, 73
Tsp45I GTSAC 2 cut(s) 16, 73
TspDTI ATGAA 2 cut(s) 132, 354
TspGWI ACGGA 1 cut(s) 236
XapI RAATTY 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.