Rmu_ssc0000442.1_g000021

TPL-binding domain in jasmonate signalling

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000442.1
Physical Location & Seq
Forward (+)
116514 .. 117771
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000442.1_g000021.1.cds

Sequence Viewer

Length: 1164 bp
atggtggaggtttccgagcgagggataaaagaggaggagattgagctggatttaggcttgtcaatcggaggcgtgagtttcagaaaaccgaaactcaacggaggagacgaaatccagacggcggcggttgtaagatccagcagcacggcgtcgccggagagcgcggttgtggatccgcaggtgaaaagggagattcaggcgctgcggaggcaggaggcgaagaggaagcgagaagagaagaaaacgcgagcccaaatcggagaacagcaacaatcgccggcgagaaagaaagagaagagtatggacgcaacgaatgttgtgctatctcaaggcgataacggcgttaacgttatgaatgtgaatttgaatttgagtaacggcgaggcggagcaccaccattaccaggttggaccggtgcagttcccgtacgcgcccgtccagttcgttccgtacccgaacgggttcgcttatccttgtgtggtgccgtgttgggcgcccaacggtggcggcggcggcggcgggggttacaggcagtttcaggcaaatcgtgatttggggaataatgggtgcaacccggagcagaatggcaaaacggcgtcgttgaataatgggtccccaatttgtagctcctctactgtttcagaacattacagcgcagcttctcatgaaggtgggagcagtgatactagaagccattcaagccgtttgaatggttcgattgggaagaagaacaaagcccagtctgaccacacagttacctctcactcgatcgaacctaattcccgaggtaatgaaaatttggtggttcaagttcaacccaaagaagaacccgcaccggaaattacagaaccgattccgttttcaaaacaacgtcctcctactccacccaaggaaaccaagacggagcgtccaaaacctcaaaccaaaaacacccagaagagcccttccaaaccacaaatgccgtacgtatccaccaccggaaatggacccaatgggaaaacggttcatggattcttgtacagatactcccagtcggagatcagcatcgtgtgtgtctgccatggaagcacattctcgccggctgagtttgtgcagcatgccggaggcaccgatgtttcacagcctctgagacacattacagtaatcccatctgcttttagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

387

Amino Acids

41.84

Weight (kDa)

8.89

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013546)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 169
Acc36I ACCTGC 1 cut(s) 169
AccB1I GGYRCC 3 cut(s) 481, 493, 1106
AccII CGCG 3 cut(s) 164, 247, 431
AclI AACGTT 1 cut(s) 348
AclWI GGATC 3 cut(s) 129, 167, 180
AcsI RAATTY 3 cut(s) 361, 367, 796
AcyI GRCGYC 3 cut(s) 149, 494, 596
AfaI GTAC 4 cut(s) 428, 452, 965, 1019
AfiI CCNNNNNNNGG 4 cut(s) 21, 121, 403, 503
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 7 cut(s) 367, 604, 699, 709, 809, 815, 864
AhdI GACNNNNNGTC 1 cut(s) 906
AjnI CCWGG 1 cut(s) 402
AluBI AGCT 3 cut(s) 46, 627, 659
AluI AGCT 3 cut(s) 46, 627, 659
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 99, 1123
AlwI GGATC 3 cut(s) 129, 167, 180
AlwNI CAGNNNCTG 2 cut(s) 202, 1126
Ama87I CYCGRG 1 cut(s) 783
ApeKI GCWGC 4 cut(s) 141, 202, 656, 1093
ApoI RAATTY 3 cut(s) 361, 367, 796
AsiGI ACCGGT 1 cut(s) 412
Asp700I GAANNNNTTC 3 cut(s) 461, 694, 852
AspLEI GCGC 5 cut(s) 164, 202, 433, 496, 656
AspS9I GGNCC 3 cut(s) 410, 612, 986
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 783
AvaII GGWCC 3 cut(s) 410, 612, 986
BamHI GGATCC 1 cut(s) 172
BanI GGYRCC 3 cut(s) 481, 493, 1106
BanII GRGCYC 2 cut(s) 253, 944
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 4 cut(s) 153, 189, 668, 1105
BccI CCATC 1 cut(s) 1156
BceAI ACGGC 8 cut(s) 135, 162, 355, 394, 469, 609, 687, 946
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 404
BciVI GTATCC 1 cut(s) 979
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 2 cut(s) 99, 1123
BfaI CTAG 1 cut(s) 687
BfoI RGCGCY 2 cut(s) 203, 497
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 979
BisI GCNGC 9 cut(s) 123, 142, 203, 508, 511, 514, 517, 657, 1094
BlsI GCNGC 9 cut(s) 124, 143, 204, 509, 512, 515, 518, 658, 1095
Bme1390I CCNGG 2 cut(s) 404, 575
Bme18I GGWCC 3 cut(s) 410, 612, 986
BmeRI GACNNNNNGTC 1 cut(s) 906
BmeT110I CYCGRG 1 cut(s) 783
BmgT120I GGNCC 3 cut(s) 410, 612, 986
BmiI GGNNCC 7 cut(s) 174, 483, 495, 613, 614, 988, 1108
BmrFI CCNGG 2 cut(s) 404, 575
BmrI ACTGGG 2 cut(s) 733, 1024
BmsI GCATC 1 cut(s) 1053
BmuI ACTGGG 2 cut(s) 733, 1024
BpuEI CTTGAG 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 575
BsaAI YACGTR 1 cut(s) 967
BsaBI GATNNNNATC 1 cut(s) 1043
BsaHI GRCGYC 3 cut(s) 149, 494, 596
BsaJI CCNNGG 3 cut(s) 784, 888, 1060
BsaWI WCCGGW 3 cut(s) 412, 835, 977
BsaXI ACNNNNNCTCC 2 cut(s) 1010, 1040
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 121, 403, 503
Bse118I RCCGGY 3 cut(s) 277, 412, 1078
Bse1I ACTGG 3 cut(s) 439, 739, 1030
Bse8I GATNNNNATC 1 cut(s) 1043
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 3 cut(s) 784, 888, 1060
BseJI GATNNNNATC 1 cut(s) 1043
BseLI CCNNNNNNNGG 4 cut(s) 21, 121, 403, 503
BseMII CTCAG 2 cut(s) 1074, 1118
BseNI ACTGG 3 cut(s) 439, 739, 1030
BseRI GAGGAG 4 cut(s) 47, 50, 117, 619
BseXI GCAGC 4 cut(s) 153, 189, 668, 1105
BsgI GTGCAG 2 cut(s) 437, 1112
Bsh1236I CGCG 3 cut(s) 164, 247, 431
Bsh1285I CGRYCG 1 cut(s) 771
BshNI GGYRCC 3 cut(s) 481, 493, 1106
BshTI ACCGGT 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 771
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 783
BsiSI CCGG 8 cut(s) 155, 278, 413, 575, 836, 978, 1079, 1101
BsiWI CGTACG 2 cut(s) 426, 963
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 4 cut(s) 21, 121, 403, 503
BsmAI GTCTC 2 cut(s) 99, 1123
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 598
BsoBI CYCGRG 1 cut(s) 783
Bsp1286I GDGCHC 3 cut(s) 253, 393, 944
Bsp1407I TGTACA 1 cut(s) 1017
Bsp143I GATC 4 cut(s) 134, 172, 768, 1038
Bsp19I CCATGG 1 cut(s) 1060
BspCNI CTCAG 2 cut(s) 1075, 1119
BspFNI CGCG 3 cut(s) 164, 247, 431
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 7 cut(s) 174, 483, 495, 613, 614, 988, 1108
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 3 cut(s) 129, 167, 180
BspQI GCTCTTC 1 cut(s) 932
BspT107I GGYRCC 3 cut(s) 481, 493, 1106
BsrFI RCCGGY 3 cut(s) 277, 412, 1078
BsrGI TGTACA 1 cut(s) 1017
BsrI ACTGG 3 cut(s) 439, 739, 1030
BssAI RCCGGY 3 cut(s) 277, 412, 1078
BssECI CCNNGG 3 cut(s) 784, 888, 1060
BssMI GATC 4 cut(s) 134, 172, 768, 1038
BssNI GRCGYC 3 cut(s) 149, 494, 596
BssT1I CCWWGG 2 cut(s) 888, 1060
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 5 cut(s) 503, 637, 754, 1003, 1141
Bst6I CTCTTC 4 cut(s) 215, 228, 290, 932
BstACI GRCGYC 3 cut(s) 149, 494, 596
BstAUI TGTACA 1 cut(s) 1017
BstBAI YACGTR 1 cut(s) 967
BstC8I GCNNGC 4 cut(s) 249, 279, 1080, 1098
BstDEI CTNAG 2 cut(s) 1083, 1127
BstDSI CCRYGG 1 cut(s) 1060
BstFNI CGCG 3 cut(s) 164, 247, 431
BstH2I RGCGCY 2 cut(s) 203, 497
BstHHI GCGC 5 cut(s) 164, 202, 433, 496, 656
BstKTI GATC 4 cut(s) 137, 175, 771, 1041
BstMAI GTCTC 2 cut(s) 99, 1123
BstMBI GATC 4 cut(s) 134, 172, 768, 1038
BstMCI CGRYCG 1 cut(s) 771
BstMWI GCNNNNNNNGC 7 cut(s) 208, 274, 339, 513, 516, 699, 1065
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 1100
BstSCI CCNGG 2 cut(s) 402, 573
BstSNI TACGTA 1 cut(s) 967
BstUI CGCG 3 cut(s) 164, 247, 431
BstV1I GCAGC 4 cut(s) 153, 189, 668, 1105
BstX2I RGATCY 2 cut(s) 134, 172
BstYI RGATCY 2 cut(s) 134, 172
BsuI GTATCC 1 cut(s) 979
BtgI CCRYGG 1 cut(s) 1060
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 1 cut(s) 685
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 4 cut(s) 249, 279, 1080, 1098
CaiI CAGNNNCTG 2 cut(s) 202, 1126
CciI TCATGA 1 cut(s) 664
CfoI GCGC 5 cut(s) 164, 202, 433, 496, 656
Cfr10I RCCGGY 3 cut(s) 277, 412, 1078
Cfr13I GGNCC 3 cut(s) 410, 612, 986
CseI GACGC 4 cut(s) 138, 314, 585, 896
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 4 cut(s) 427, 451, 964, 1018
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 4 cut(s) 665, 1007, 1061, 1097
CviQI GTAC 4 cut(s) 427, 451, 964, 1018
DdeI CTNAG 2 cut(s) 1083, 1127
DinI GGCGCC 1 cut(s) 495
DpnI GATC 4 cut(s) 136, 174, 770, 1040
DpnII GATC 4 cut(s) 134, 172, 768, 1038
DriI GACNNNNNGTC 1 cut(s) 906
Eam1104I CTCTTC 4 cut(s) 215, 228, 290, 932
Eam1105I GACNNNNNGTC 1 cut(s) 906
EarI CTCTTC 4 cut(s) 215, 228, 290, 932
EciI GGCGGA 1 cut(s) 401
Eco105I TACGTA 1 cut(s) 967
Eco130I CCWWGG 2 cut(s) 888, 1060
Eco24I GRGCYC 2 cut(s) 253, 944
Eco47I GGWCC 3 cut(s) 410, 612, 986
Eco88I CYCGRG 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 2 cut(s) 888, 1060
EcoT38I GRGCYC 2 cut(s) 253, 944
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
ErhI CCWWGG 2 cut(s) 888, 1060
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 4 cut(s) 668, 1010, 1064, 1100
FaiI YATR 6 cut(s) 302, 353, 666, 1008, 1062, 1098
FaqI GGGAC 1 cut(s) 598
FatI CATG 4 cut(s) 664, 1006, 1060, 1096
FauI CCCGC 2 cut(s) 512, 838
Fnu4HI GCNGC 9 cut(s) 123, 142, 203, 508, 511, 514, 517, 657, 1094
FriOI GRGCYC 2 cut(s) 253, 944
Fsp4HI GCNGC 9 cut(s) 123, 142, 203, 508, 511, 514, 517, 657, 1094
FspBI CTAG 1 cut(s) 687
GlaI GCGC 5 cut(s) 163, 201, 432, 495, 655
GluI GCNGC 9 cut(s) 123, 142, 203, 508, 511, 514, 517, 657, 1094
HaeII RGCGCY 2 cut(s) 203, 497
HapII CCGG 8 cut(s) 155, 278, 413, 575, 836, 978, 1079, 1101
HgaI GACGC 4 cut(s) 138, 314, 585, 896
HhaI GCGC 5 cut(s) 164, 202, 433, 496, 656
Hin1I GRCGYC 3 cut(s) 149, 494, 596
Hin1II CATG 4 cut(s) 668, 1010, 1064, 1100
Hin6I GCGC 5 cut(s) 162, 200, 431, 494, 654
HinP1I GCGC 5 cut(s) 162, 200, 431, 494, 654
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 3 cut(s) 193, 853, 1011
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 8 cut(s) 155, 278, 413, 575, 836, 978, 1079, 1101
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 8 cut(s) 16, 68, 83, 260, 643, 745, 1036, 1128
Hpy188III TCNNGA 4 cut(s) 115, 548, 665, 783
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 2 cut(s) 154, 601
HpyAV CCTTC 2 cut(s) 662, 954
HpyCH4III ACNGT 5 cut(s) 503, 637, 754, 1003, 1141
HpyCH4IV ACGT 3 cut(s) 348, 871, 966
HpyCH4V TGCA 3 cut(s) 418, 570, 1093
HpyF10VI GCNNNNNNNGC 7 cut(s) 208, 274, 339, 513, 516, 699, 1065
HpyF3I CTNAG 2 cut(s) 1083, 1127
HpySE526I ACGT 3 cut(s) 348, 871, 966
Hsp92I GRCGYC 3 cut(s) 149, 494, 596
Hsp92II CATG 4 cut(s) 668, 1010, 1064, 1100
HspAI GCGC 5 cut(s) 162, 200, 431, 494, 654
KasI GGCGCC 1 cut(s) 493
KflI GGGWCCC 1 cut(s) 612
KroI GCCGGC 2 cut(s) 277, 1078
KroNI GCCGGC 2 cut(s) 279, 1080
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 4 cut(s) 134, 172, 768, 1038
LguI GCTCTTC 1 cut(s) 932
LmnI GCTCC 5 cut(s) 388, 577, 632, 675, 904
Lsp1109I GCAGC 4 cut(s) 153, 189, 668, 1105
LweI GCATC 1 cut(s) 1053
MabI ACCWGGT 1 cut(s) 402
MaeI CTAG 1 cut(s) 687
MaeII ACGT 3 cut(s) 348, 871, 966
MaeIII GTNAC 3 cut(s) 374, 524, 754
MalI GATC 4 cut(s) 136, 174, 770, 1040
MboI GATC 4 cut(s) 134, 172, 768, 1038
MboII GAAGA 8 cut(s) 232, 245, 250, 307, 736, 739, 836, 949
MflI RGATCY 2 cut(s) 134, 172
MhlI GDGCHC 3 cut(s) 253, 393, 944
MluCI AATT 6 cut(s) 361, 367, 618, 778, 796, 840
Mly113I GGCGCC 1 cut(s) 494
MmeI TCCRAC 2 cut(s) 388, 1014
MreI CGCCGGCG 1 cut(s) 277
MroNI GCCGGC 2 cut(s) 277, 1078
MroXI GAANNNNTTC 3 cut(s) 461, 694, 852
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 669
MspI CCGG 8 cut(s) 155, 278, 413, 575, 836, 978, 1079, 1101
MspR9I CCNGG 2 cut(s) 404, 575
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 3 cut(s) 164, 247, 431
MwoI GCNNNNNNNGC 7 cut(s) 208, 274, 339, 513, 516, 699, 1065
NaeI GCCGGC 2 cut(s) 279, 1080
NarI GGCGCC 1 cut(s) 494
NciI CCSGG 1 cut(s) 575
NcoI CCATGG 1 cut(s) 1060
NdeII GATC 4 cut(s) 134, 172, 768, 1038
NgoMIV GCCGGC 2 cut(s) 277, 1078
NlaIII CATG 4 cut(s) 668, 1010, 1064, 1100
NlaIV GGNNCC 7 cut(s) 174, 483, 495, 613, 614, 988, 1108
NspI RCATGY 1 cut(s) 1100
PaeI GCATGC 1 cut(s) 1100
PagI TCATGA 1 cut(s) 664
PaqCI CACCTGC 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 932
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 345
PdiI GCCGGC 2 cut(s) 279, 1080
PdmI GAANNNNTTC 3 cut(s) 461, 694, 852
PfeI GAWTC 3 cut(s) 193, 853, 1011
Pfl23II CGTACG 2 cut(s) 426, 963
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 9 cut(s) 124, 143, 204, 509, 512, 515, 518, 658, 1095
Ple19I CGATCG 1 cut(s) 771
PluTI GGCGCC 1 cut(s) 497
Ppu21I YACGTR 1 cut(s) 967
PpuMI RGGWCCY 1 cut(s) 612
Psp1406I AACGTT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspLI CGTACG 2 cut(s) 426, 963
PspN4I GGNNCC 7 cut(s) 174, 483, 495, 613, 614, 988, 1108
PspPI GGNCC 3 cut(s) 410, 612, 986
PspPPI RGGWCCY 1 cut(s) 612
PstNI CAGNNNCTG 2 cut(s) 202, 1126
PsuI RGATCY 2 cut(s) 134, 172
PvuI CGATCG 1 cut(s) 771
RsaI GTAC 4 cut(s) 428, 452, 965, 1019
RsaNI GTAC 4 cut(s) 427, 451, 964, 1018
RseI CAYNNNNRTG 1 cut(s) 669
SapI GCTCTTC 1 cut(s) 932
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 9 cut(s) 123, 142, 203, 508, 511, 514, 517, 657, 1094
Sau3AI GATC 4 cut(s) 134, 172, 768, 1038
Sau96I GGNCC 3 cut(s) 410, 612, 986
ScrFI CCNGG 2 cut(s) 404, 575
SduI GDGCHC 3 cut(s) 253, 393, 944
SexAI ACCWGGT 1 cut(s) 402
SfaNI GCATC 1 cut(s) 1053
SfoI GGCGCC 1 cut(s) 495
SgrAI CRCCGGYG 1 cut(s) 277
SinI GGWCC 3 cut(s) 410, 612, 986
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
SnaBI TACGTA 1 cut(s) 967
SphI GCATGC 1 cut(s) 1100
Sse9I AATT 6 cut(s) 361, 367, 618, 778, 796, 840
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 2 cut(s) 402, 573
StyI CCWWGG 2 cut(s) 888, 1060
TaaI ACNGT 5 cut(s) 503, 637, 754, 1003, 1141
TaiI ACGT 3 cut(s) 351, 874, 969
TaqI TCGA 3 cut(s) 716, 767, 771
TasI AATT 6 cut(s) 361, 367, 618, 778, 796, 840
TatI WGTACW 1 cut(s) 1017
TauI GCSGC 5 cut(s) 125, 510, 513, 516, 519
TfiI GAWTC 3 cut(s) 193, 853, 1011
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 685
TseI GCWGC 4 cut(s) 141, 202, 656, 1093
TspDTI ATGAA 4 cut(s) 368, 681, 807, 995
TspGWI ACGGA 4 cut(s) 114, 438, 846, 917
TspRI CASTG 1 cut(s) 685
VpaK11BI GGWCC 3 cut(s) 410, 612, 986
XapI RAATTY 3 cut(s) 361, 367, 796
XceI RCATGY 1 cut(s) 1100
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XmnI GAANNNNTTC 3 cut(s) 461, 694, 852
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.