Rw6G023420

TPL-binding domain in jasmonate signalling

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
45883235 .. 45884509
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023420.1

Sequence Viewer

Length: 1275 bp
ATGGTGGAGGTTTCCGAGCGAGGGATAAAAGAGGAGGAGATTGAGCTGGATTTAGGCTTGTCAATCGGAGGCGTGAGTTTCAGAAAACCGAAACTCAACGGAGGAGACGAAATCCAGACGGCGGCGGTTGTAAGATCCAGCAGCACGGCGTCGCCGGCGGCCTTTTGCCAGCCGGAGAGCGCGGTTGTGGATCCGCAGGCGAAAAGGGAGATTCAGGCGCTGCGGAGGCAGGAGGCGAAGAGGAAGCGAGAAGAGAAGAAAACGCGAGCCCAAATAGGAGAACAGCAACAATCGCCGGCGAGAAAGAAAGAGAAGAGTATGGACGCAACGAATGTTGTGCTATCTCAAGGCGATAACGGCGTTAACGTTATGAATGTGAATTTGAATATGAGTAACGGCGAGGCGGAGCGCCACCATTACCAGGTTGGACCGGTGCAGTTCCCGTACGCGCCCGTCCAGTTCGTTCCGTACCCGAACGGGTTCGCTTATCCTTGTGTGGTGCCGTGTTGGGCGCCCAACGGTGGCGGCGGCGGCGGCGGGGGTTACAGGCAGTTTCAGGCAAATCATGATTTGGGGAATAATGGGTGCAACCCGGAGCAGAATGGCAAAACGGCGTCGTTGAATAATGGGTCCCCAATTTGTAGCTCCTCTACTGTTTCAGAACATTGCAGCGCAGCTTCTCATGAAGGTATATATATCTCATATCTAATCCATTTGTGTCCCCAAATTTTGATTATTTTGTTAAATCTTCTTCTGATTTTTGGGTTTTCAATATTTTTAGGTGGGAGCAGTGATACTAGAAGCCATTCAAGCCGTTTGAATGGTTCGATTGGGAAGAAGAACAAAGCCCAGTCTGACCACACAGTTACCTCTCACTCGATCGAACCTAATTCCCGAGGTAATGAAAATTTGGTGGTTCAAGTTCAACCCAAAGAAGAACCCGCACCGGAAATTACAGAACCGATTCCGTTTTCAAAACAACGTCCTCCTACTCCACCCAAGGAAACCAAGACGGAGCGTCCAAAACCTCAAACCAAAAACACCCAGAAGAGCCCCTCCAAACCACAAATGCCGTACGTATCCACCACCGGAAATGGACCCAATGGGAAAACGGTTCATGGATTCTTGTACAGATACTCCCAGTCGGAGATCAGCATCGTGTGTGTCTGTCATGGAAGCACATTCTCGCCGGCTGAGTTTGTGCAGCATGCCGGAGGCACCGATGTTTCACAGCCTCTGAGACACATAACAGTAATCCCATCTGCTTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

45.92

Weight (kDa)

8.48

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 385 - 417 1.7e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013546)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 499, 511, 1217
AccII CGCG 3 cut(s) 182, 265, 449
AclI AACGTT 1 cut(s) 366
AclWI GGATC 3 cut(s) 129, 185, 198
AcsI RAATTY 3 cut(s) 379, 726, 907
AcyI GRCGYC 3 cut(s) 149, 512, 614
AfaI GTAC 4 cut(s) 446, 470, 1076, 1130
AfiI CCNNNNNNNGG 4 cut(s) 21, 121, 421, 521
AgeI ACCGGT 1 cut(s) 430
AgsI TTSAA 9 cut(s) 385, 622, 771, 810, 820, 920, 926, 975, 1271
AhdI GACNNNNNGTC 1 cut(s) 1017
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 3 cut(s) 46, 645, 677
AluI AGCT 3 cut(s) 46, 645, 677
Alw26I GTCTC 2 cut(s) 99, 1234
AlwI GGATC 3 cut(s) 129, 185, 198
AlwNI CAGNNNCTG 2 cut(s) 220, 1237
Ama87I CYCGRG 1 cut(s) 894
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 5 cut(s) 141, 220, 669, 674, 1204
ApoI RAATTY 3 cut(s) 379, 726, 907
AsiGI ACCGGT 1 cut(s) 430
Asp700I GAANNNNTTC 3 cut(s) 479, 805, 963
AspLEI GCGC 6 cut(s) 182, 220, 411, 451, 514, 674
AspS9I GGNCC 3 cut(s) 428, 630, 1097
AsuC2I CCSGG 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 894
AvaII GGWCC 3 cut(s) 428, 630, 1097
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 3 cut(s) 499, 511, 1217
BanII GRGCYC 2 cut(s) 271, 1055
BbvI GCAGC 5 cut(s) 153, 207, 681, 686, 1216
BccI CCATC 1 cut(s) 1267
BceAI ACGGC 8 cut(s) 135, 162, 373, 412, 487, 627, 798, 1057
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BciT130I CCWGG 1 cut(s) 422
BciVI GTATCC 1 cut(s) 1090
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 2 cut(s) 99, 1234
BfaI CTAG 1 cut(s) 798
BfoI RGCGCY 3 cut(s) 221, 412, 515
BfuI GTATCC 1 cut(s) 1090
Bme1390I CCNGG 2 cut(s) 422, 593
Bme18I GGWCC 3 cut(s) 428, 630, 1097
BmeRI GACNNNNNGTC 1 cut(s) 1017
BmeT110I CYCGRG 1 cut(s) 894
BmgT120I GGNCC 3 cut(s) 428, 630, 1097
BmiI GGNNCC 7 cut(s) 192, 501, 513, 631, 632, 1099, 1219
BmrFI CCNGG 2 cut(s) 422, 593
BmrI ACTGGG 2 cut(s) 844, 1135
BmsI GCATC 1 cut(s) 1164
BmuI ACTGGG 2 cut(s) 844, 1135
BpuEI CTTGAG 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 1078
BsaBI GATNNNNATC 1 cut(s) 1154
BsaHI GRCGYC 3 cut(s) 149, 512, 614
BsaJI CCNNGG 2 cut(s) 895, 999
BsaWI WCCGGW 3 cut(s) 430, 946, 1088
BsaXI ACNNNNNCTCC 2 cut(s) 1121, 1151
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 121, 421, 521
Bse118I RCCGGY 4 cut(s) 154, 295, 430, 1189
Bse1I ACTGG 3 cut(s) 457, 850, 1141
Bse3DI GCAATG 1 cut(s) 664
Bse8I GATNNNNATC 1 cut(s) 1154
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 895, 999
BseJI GATNNNNATC 1 cut(s) 1154
BseLI CCNNNNNNNGG 4 cut(s) 21, 121, 421, 521
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 2 cut(s) 1185, 1229
BseNI ACTGG 3 cut(s) 457, 850, 1141
BseRI GAGGAG 4 cut(s) 47, 50, 117, 637
BseXI GCAGC 5 cut(s) 153, 207, 681, 686, 1216
BsgI GTGCAG 2 cut(s) 455, 1223
Bsh1236I CGCG 3 cut(s) 182, 265, 449
Bsh1285I CGRYCG 1 cut(s) 882
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 3 cut(s) 499, 511, 1217
BshTI ACCGGT 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 882
BsiHKCI CYCGRG 1 cut(s) 894
BsiSI CCGG 9 cut(s) 155, 173, 296, 431, 593, 947, 1089, 1190, 1212
BsiWI CGTACG 2 cut(s) 444, 1074
BslFI GGGAC 2 cut(s) 616, 705
BslI CCNNNNNNNGG 4 cut(s) 21, 121, 421, 521
BsmAI GTCTC 2 cut(s) 99, 1234
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 616, 705
BsnI GGCC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 894
Bsp1286I GDGCHC 2 cut(s) 271, 1055
Bsp1407I TGTACA 1 cut(s) 1128
Bsp143I GATC 4 cut(s) 134, 190, 879, 1149
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 1186, 1230
BspFNI CGCG 3 cut(s) 182, 265, 449
BspHI TCATGA 2 cut(s) 565, 682
BspLI GGNNCC 7 cut(s) 192, 501, 513, 631, 632, 1099, 1219
BspPI GGATC 3 cut(s) 129, 185, 198
BspQI GCTCTTC 1 cut(s) 1043
BspT107I GGYRCC 3 cut(s) 499, 511, 1217
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 4 cut(s) 154, 295, 430, 1189
BsrGI TGTACA 1 cut(s) 1128
BsrI ACTGG 3 cut(s) 457, 850, 1141
BssAI RCCGGY 4 cut(s) 154, 295, 430, 1189
BssECI CCNNGG 2 cut(s) 895, 999
BssMI GATC 4 cut(s) 134, 190, 879, 1149
BssNI GRCGYC 3 cut(s) 149, 512, 614
BssT1I CCWWGG 1 cut(s) 999
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 5 cut(s) 521, 655, 865, 1114, 1252
Bst6I CTCTTC 4 cut(s) 233, 246, 308, 1043
BstACI GRCGYC 3 cut(s) 149, 512, 614
BstAUI TGTACA 1 cut(s) 1128
BstBAI YACGTR 1 cut(s) 1078
BstC8I GCNNGC 7 cut(s) 156, 170, 198, 267, 297, 1191, 1209
BstDEI CTNAG 2 cut(s) 1194, 1238
BstFNI CGCG 3 cut(s) 182, 265, 449
BstH2I RGCGCY 3 cut(s) 221, 412, 515
BstHHI GCGC 6 cut(s) 182, 220, 411, 451, 514, 674
BstKTI GATC 4 cut(s) 137, 193, 882, 1152
BstMAI GTCTC 2 cut(s) 99, 1234
BstMBI GATC 4 cut(s) 134, 190, 879, 1149
BstMCI CGRYCG 1 cut(s) 882
BstMWI GCNNNNNNNGC 7 cut(s) 155, 226, 292, 357, 531, 534, 810
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 1211
BstSCI CCNGG 2 cut(s) 420, 591
BstSNI TACGTA 1 cut(s) 1078
BstUI CGCG 3 cut(s) 182, 265, 449
BstV1I GCAGC 5 cut(s) 153, 207, 681, 686, 1216
BstX2I RGATCY 2 cut(s) 134, 190
BstYI RGATCY 2 cut(s) 134, 190
BsuI GTATCC 1 cut(s) 1090
BsuRI GGCC 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 796
BtsIMutI CAGTG 1 cut(s) 796
Cac8I GCNNGC 7 cut(s) 156, 170, 198, 267, 297, 1191, 1209
CaiI CAGNNNCTG 2 cut(s) 220, 1237
CciI TCATGA 2 cut(s) 565, 682
CfoI GCGC 6 cut(s) 182, 220, 411, 451, 514, 674
Cfr10I RCCGGY 4 cut(s) 154, 295, 430, 1189
Cfr13I GGNCC 3 cut(s) 428, 630, 1097
CseI GACGC 4 cut(s) 138, 332, 603, 1007
CsiI ACCWGGT 1 cut(s) 420
Csp6I GTAC 4 cut(s) 445, 469, 1075, 1129
CspAI ACCGGT 1 cut(s) 430
CviAII CATG 5 cut(s) 566, 683, 1118, 1172, 1208
CviQI GTAC 4 cut(s) 445, 469, 1075, 1129
DdeI CTNAG 2 cut(s) 1194, 1238
DinI GGCGCC 1 cut(s) 513
DpnI GATC 4 cut(s) 136, 192, 881, 1151
DpnII GATC 4 cut(s) 134, 190, 879, 1149
DriI GACNNNNNGTC 1 cut(s) 1017
Eam1104I CTCTTC 4 cut(s) 233, 246, 308, 1043
Eam1105I GACNNNNNGTC 1 cut(s) 1017
EarI CTCTTC 4 cut(s) 233, 246, 308, 1043
EciI GGCGGA 1 cut(s) 419
Eco105I TACGTA 1 cut(s) 1078
Eco130I CCWWGG 1 cut(s) 999
Eco24I GRGCYC 2 cut(s) 271, 1055
Eco47I GGWCC 3 cut(s) 428, 630, 1097
Eco88I CYCGRG 1 cut(s) 894
EcoO109I RGGNCCY 1 cut(s) 630
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 999
EcoT38I GRGCYC 2 cut(s) 271, 1055
EgeI GGCGCC 1 cut(s) 513
EheI GGCGCC 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 999
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 5 cut(s) 569, 686, 1121, 1175, 1211
FaqI GGGAC 2 cut(s) 616, 705
FatI CATG 5 cut(s) 565, 682, 1117, 1171, 1207
FauI CCCGC 2 cut(s) 530, 949
FriOI GRGCYC 2 cut(s) 271, 1055
FspBI CTAG 1 cut(s) 798
GlaI GCGC 6 cut(s) 181, 219, 410, 450, 513, 673
HaeII RGCGCY 3 cut(s) 221, 412, 515
HaeIII GGCC 1 cut(s) 161
HapII CCGG 9 cut(s) 155, 173, 296, 431, 593, 947, 1089, 1190, 1212
HgaI GACGC 4 cut(s) 138, 332, 603, 1007
HhaI GCGC 6 cut(s) 182, 220, 411, 451, 514, 674
Hin1I GRCGYC 3 cut(s) 149, 512, 614
Hin1II CATG 5 cut(s) 569, 686, 1121, 1175, 1211
Hin6I GCGC 6 cut(s) 180, 218, 409, 449, 512, 672
HinP1I GCGC 6 cut(s) 180, 218, 409, 449, 512, 672
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 3 cut(s) 211, 964, 1122
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 9 cut(s) 155, 173, 296, 431, 593, 947, 1089, 1190, 1212
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 8 cut(s) 16, 68, 83, 661, 756, 856, 1147, 1239
Hpy188III TCNNGA 4 cut(s) 115, 566, 683, 894
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 2 cut(s) 154, 619
HpyAV CCTTC 1 cut(s) 680
HpyCH4III ACNGT 5 cut(s) 521, 655, 865, 1114, 1252
HpyCH4IV ACGT 3 cut(s) 366, 982, 1077
HpyCH4V TGCA 4 cut(s) 436, 588, 669, 1204
HpyF10VI GCNNNNNNNGC 7 cut(s) 155, 226, 292, 357, 531, 534, 810
HpyF3I CTNAG 2 cut(s) 1194, 1238
HpySE526I ACGT 3 cut(s) 366, 982, 1077
Hsp92I GRCGYC 3 cut(s) 149, 512, 614
Hsp92II CATG 5 cut(s) 569, 686, 1121, 1175, 1211
HspAI GCGC 6 cut(s) 180, 218, 409, 449, 512, 672
KasI GGCGCC 1 cut(s) 511
KflI GGGWCCC 1 cut(s) 630
KroI GCCGGC 3 cut(s) 154, 295, 1189
KroNI GCCGGC 3 cut(s) 156, 297, 1191
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 134, 190, 879, 1149
LguI GCTCTTC 1 cut(s) 1043
LmnI GCTCC 5 cut(s) 406, 595, 650, 786, 1015
Lsp1109I GCAGC 5 cut(s) 153, 207, 681, 686, 1216
LweI GCATC 1 cut(s) 1164
MabI ACCWGGT 1 cut(s) 420
MaeI CTAG 1 cut(s) 798
MaeII ACGT 3 cut(s) 366, 982, 1077
MaeIII GTNAC 3 cut(s) 392, 542, 865
MalI GATC 4 cut(s) 136, 192, 881, 1151
MboI GATC 4 cut(s) 134, 190, 879, 1149
MflI RGATCY 2 cut(s) 134, 190
MhlI GDGCHC 2 cut(s) 271, 1055
MluCI AATT 6 cut(s) 379, 636, 726, 889, 907, 951
Mly113I GGCGCC 1 cut(s) 512
MmeI TCCRAC 2 cut(s) 406, 1125
MreI CGCCGGCG 2 cut(s) 154, 295
MroNI GCCGGC 3 cut(s) 154, 295, 1189
MroXI GAANNNNTTC 3 cut(s) 479, 805, 963
MseI TTAA 2 cut(s) 363, 743
MspI CCGG 9 cut(s) 155, 173, 296, 431, 593, 947, 1089, 1190, 1212
MspR9I CCNGG 2 cut(s) 422, 593
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 3 cut(s) 182, 265, 449
MwoI GCNNNNNNNGC 7 cut(s) 155, 226, 292, 357, 531, 534, 810
NaeI GCCGGC 3 cut(s) 156, 297, 1191
NarI GGCGCC 1 cut(s) 512
NciI CCSGG 1 cut(s) 593
NdeII GATC 4 cut(s) 134, 190, 879, 1149
NgoMIV GCCGGC 3 cut(s) 154, 295, 1189
NlaIII CATG 5 cut(s) 569, 686, 1121, 1175, 1211
NlaIV GGNNCC 7 cut(s) 192, 501, 513, 631, 632, 1099, 1219
NspI RCATGY 1 cut(s) 1211
PaeI GCATGC 1 cut(s) 1211
PagI TCATGA 2 cut(s) 565, 682
PciSI GCTCTTC 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 363
PdiI GCCGGC 3 cut(s) 156, 297, 1191
PdmI GAANNNNTTC 3 cut(s) 479, 805, 963
PfeI GAWTC 3 cut(s) 211, 964, 1122
Pfl23II CGTACG 2 cut(s) 444, 1074
PinAI ACCGGT 1 cut(s) 430
Ple19I CGATCG 1 cut(s) 882
PluTI GGCGCC 1 cut(s) 515
Ppu21I YACGTR 1 cut(s) 1078
PpuMI RGGWCCY 1 cut(s) 630
Psp1406I AACGTT 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspLI CGTACG 2 cut(s) 444, 1074
PspN4I GGNNCC 7 cut(s) 192, 501, 513, 631, 632, 1099, 1219
PspPI GGNCC 3 cut(s) 428, 630, 1097
PspPPI RGGWCCY 1 cut(s) 630
PstNI CAGNNNCTG 2 cut(s) 220, 1237
PsuI RGATCY 2 cut(s) 134, 190
PvuI CGATCG 1 cut(s) 882
RsaI GTAC 4 cut(s) 446, 470, 1076, 1130
RsaNI GTAC 4 cut(s) 445, 469, 1075, 1129
SapI GCTCTTC 1 cut(s) 1043
SaqAI TTAA 2 cut(s) 363, 743
Sau3AI GATC 4 cut(s) 134, 190, 879, 1149
Sau96I GGNCC 3 cut(s) 428, 630, 1097
ScrFI CCNGG 2 cut(s) 422, 593
SduI GDGCHC 2 cut(s) 271, 1055
SexAI ACCWGGT 1 cut(s) 420
SfaNI GCATC 1 cut(s) 1164
SfoI GGCGCC 1 cut(s) 513
SgrAI CRCCGGYG 2 cut(s) 154, 295
SinI GGWCC 3 cut(s) 428, 630, 1097
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
SnaBI TACGTA 1 cut(s) 1078
SphI GCATGC 1 cut(s) 1211
Sse9I AATT 6 cut(s) 379, 636, 726, 889, 907, 951
SspDI GGCGCC 1 cut(s) 511
SspI AATATT 1 cut(s) 774
SspMI CTAG 1 cut(s) 798
StyD4I CCNGG 2 cut(s) 420, 591
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 5 cut(s) 521, 655, 865, 1114, 1252
TaiI ACGT 3 cut(s) 369, 985, 1080
TaqI TCGA 3 cut(s) 827, 878, 882
TasI AATT 6 cut(s) 379, 636, 726, 889, 907, 951
TatI WGTACW 1 cut(s) 1128
TauI GCSGC 6 cut(s) 125, 161, 528, 531, 534, 537
TfiI GAWTC 3 cut(s) 211, 964, 1122
Tru1I TTAA 2 cut(s) 363, 743
Tru9I TTAA 2 cut(s) 363, 743
TscAI CASTG 1 cut(s) 796
TseI GCWGC 5 cut(s) 141, 220, 669, 674, 1204
TspDTI ATGAA 4 cut(s) 386, 699, 918, 1106
TspGWI ACGGA 4 cut(s) 114, 456, 957, 1028
TspRI CASTG 1 cut(s) 796
VpaK11BI GGWCC 3 cut(s) 428, 630, 1097
XapI RAATTY 3 cut(s) 379, 726, 907
XceI RCATGY 1 cut(s) 1211
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmnI GAANNNNTTC 3 cut(s) 479, 805, 963
XspI CTAG 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.