FvH4_2g18540

Forkhead associated domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
15905084 .. 15909888
4805 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18540.t1

Sequence Viewer

Length: 1020 bp
ATGGCGACGAGCAGTGACGTGGAGGCTGGATTCGCGAAGCTCCAAGGCGAAGACTTCGAGTACTACATGCAGACCTACTCCATAATCCTCGGCCGCAACTCCAAGAAATCCACCGTCGACGTCGACCTCTCCAGCCTCGGCGGCGGCATGAACATCTCCCGCCACCACGCGCGCATCTTCTACGACTTCACGCGCCGCCGCTTCGCCCTCGAGGTTCTCGGAAAGAACGGCTGCCTCGTCGAGGGGGTGCTCCACCTCCCCGGGAACCCTCCGGTCAAGCTCGATTCACAGGATCTGCTTCAGATTGGGGACAAGGAGTTCTACTTTCTACTTCCGGTGAGGAGCATTCTCGGTGGGCCTGTTGGGCCGAGGCATTACCCGGCGTCGGTCGGAGTTTCGGGCTCGGCGGGGACGGCCCATTATGGATATGGGCTTCCCGGGGCGTCGGGCGGGTCGGTGGGGAAGAAGAGTAGGGGGAGGGAGTTTTATGAGGAGGAGTATGAGGATGAGGATGACATTGGCGGCGGCGGAGGTGGTGGTGGTGGTGGTGGTAGTGGGAGTGGGAAGAAGAGGAGGGATGGATATGAGGGTTATGGGTACAGTGGTGGGCCGGGTTCCGGATCGGGCACCAAGTCGGGTTCTTTGGCTTTAGAAAAGAAAGGGGATGGAAGATCAAGGGTTGATCGAGACAGTGACAATCAGCAACTTCTGCATTTGGAAGAAAAGGATGTGGTGTCATCTGTTGCTACAGTGCTATCTGATCTTTGTGGTCCTGGCGAATGGATGCCTATGGAGAAATTGCATGCTAAGTTGGTGGAACAGTATAGTGCTGTTTGGCATCACACTCGAGTGAGGAGATATCTTACTTCTGAGGACTGGCCTGGTCCAGAGTCAAAGGGGAAACCGTGGTATGGCTTGCTTATGCTGCTAAGAAAATACCCAGAACACTTTGTCATCAACACAAGGTCTAAGGGTCGTGTAACATTGGAATTTGTATCTCTTGTCTCGTTGCTTTCATAA

Protein Analysis

340

Amino Acids

36.71

Weight (kDa)

6.81

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 29 - 103 2.8e-10 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07220
fragaria_vesca FvH4_2g18540
malus_domestica MD05G1171600.v1.1 MD10G1159800.v1.1
prunus_persica Prupe.8G198900_v2.0.a1
pyrus_communis pycom05g15830 pycom10g13800
rosa_chinensis RchiOBHm_Chr6g0284101
rosa_laevigata RLG00000012769
rosa_multiflora Rmu_sc0003778.1_g000044 Rmu_sc0015649.1_g000003
rosa_roxburghii Rroxscaffold_7G00184930
rosa_rugosa Rorug06G0160700.1
rosa_samantha Rh6BG274200
rosa_wichuraiana Rw6G023540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AbsI CCTCGAGG 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 626
AccI GTMKAC 2 cut(s) 117, 123
AccII CGCG 4 cut(s) 35, 170, 172, 193
AccIII TCCGGA 1 cut(s) 617
AclWI GGATC 2 cut(s) 300, 628
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 1 cut(s) 989
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 3 cut(s) 120, 383, 443
AfaI GTAC 2 cut(s) 62, 599
AfiI CCNNNNNNNGG 4 cut(s) 241, 385, 617, 911
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 2 cut(s) 772, 880
AleI CACNNNNGTG 1 cut(s) 848
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
AluBI AGCT 2 cut(s) 40, 280
AluI AGCT 2 cut(s) 40, 280
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 681, 1009
AlwI GGATC 2 cut(s) 300, 628
AlwNI CAGNNNCTG 1 cut(s) 295
Ama87I CYCGRG 4 cut(s) 209, 260, 437, 846
Aor13HI TCCGGA 1 cut(s) 617
AoxI GGCC 6 cut(s) 91, 356, 365, 414, 608, 878
ApeKI GCWGC 2 cut(s) 231, 925
ApoI RAATTY 1 cut(s) 989
AspLEI GCGC 3 cut(s) 172, 174, 195
AspS9I GGNCC 6 cut(s) 356, 365, 415, 608, 770, 884
AsuC2I CCSGG 6 cut(s) 261, 262, 380, 438, 439, 612
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 4 cut(s) 209, 260, 437, 846
AvaII GGWCC 2 cut(s) 770, 884
BaeGI GKGCMC 1 cut(s) 629
BaeI ACNNNNGTAYC 2 cut(s) 589, 622
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 218, 912
BccI CCATC 2 cut(s) 572, 659
BceAI ACGGC 2 cut(s) 244, 429
BcgI CGANNNNNNTGC 2 cut(s) 827, 861
BciT130I CCWGG 2 cut(s) 774, 882
BcnI CCSGG 6 cut(s) 261, 262, 380, 438, 439, 612
BcoDI GTCTC 2 cut(s) 681, 1009
BfmI CTRYAG 1 cut(s) 747
BglI GCCNNNNNGGC 2 cut(s) 141, 364
BisI GCNGC 9 cut(s) 94, 142, 145, 196, 199, 232, 523, 526, 926
BlsI GCNGC 9 cut(s) 95, 143, 146, 197, 200, 233, 524, 527, 927
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 8 cut(s) 261, 262, 380, 438, 439, 612, 774, 882
Bme18I GGWCC 2 cut(s) 770, 884
BmeT110I CYCGRG 4 cut(s) 209, 260, 437, 846
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 6 cut(s) 356, 365, 415, 608, 770, 884
BmiI GGNNCC 3 cut(s) 266, 616, 628
BmrFI CCNGG 8 cut(s) 261, 262, 380, 438, 439, 612, 774, 882
BmsI GCATC 3 cut(s) 183, 774, 847
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 115
BpuMI CCSGG 6 cut(s) 261, 262, 380, 438, 439, 612
BsaHI GRCGYC 3 cut(s) 120, 383, 443
BsaJI CCNNGG 9 cut(s) 43, 88, 136, 259, 260, 368, 437, 438, 905
BsaWI WCCGGW 3 cut(s) 271, 334, 617
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 385, 617, 911
Bse1I ACTGG 1 cut(s) 881
BseAI TCCGGA 1 cut(s) 617
BseBI CCWGG 2 cut(s) 774, 882
BseDI CCNNGG 9 cut(s) 43, 88, 136, 259, 260, 368, 437, 438, 905
BseGI GGATG 6 cut(s) 511, 517, 583, 670, 733, 789
BseLI CCNNNNNNNGG 4 cut(s) 241, 385, 617, 911
BseMII CTCAG 1 cut(s) 861
BseNI ACTGG 1 cut(s) 881
BsePI GCGCGC 1 cut(s) 170
BseRI GAGGAG 5 cut(s) 355, 506, 509, 586, 868
BseSI GKGCMC 1 cut(s) 629
BseX3I CGGCCG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 218, 912
Bsh1236I CGCG 4 cut(s) 35, 170, 172, 193
Bsh1285I CGRYCG 2 cut(s) 94, 390
BshFI GGCC 6 cut(s) 93, 358, 367, 416, 610, 880
BshNI GGYRCC 1 cut(s) 626
BsiEI CGRYCG 2 cut(s) 94, 390
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 4 cut(s) 209, 260, 437, 846
BsiSI CCGG 7 cut(s) 261, 272, 335, 380, 438, 611, 618
BslFI GGGAC 2 cut(s) 323, 424
BslI CCNNNNNNNGG 4 cut(s) 241, 385, 617, 911
BsmAI GTCTC 2 cut(s) 681, 1009
BsmFI GGGAC 2 cut(s) 323, 424
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 6 cut(s) 93, 358, 367, 416, 610, 880
BsoBI CYCGRG 4 cut(s) 209, 260, 437, 846
Bsp1286I GDGCHC 3 cut(s) 252, 404, 629
Bsp13I TCCGGA 1 cut(s) 617
Bsp143I GATC 5 cut(s) 292, 620, 671, 682, 760
Bsp68I TCGCGA 1 cut(s) 35
BspANI GGCC 6 cut(s) 93, 358, 367, 416, 610, 880
BspCNI CTCAG 1 cut(s) 862
BspEI TCCGGA 1 cut(s) 617
BspFNI CGCG 4 cut(s) 35, 170, 172, 193
BspLI GGNNCC 3 cut(s) 266, 616, 628
BspPI GGATC 2 cut(s) 300, 628
BspT107I GGYRCC 1 cut(s) 626
BsrI ACTGG 1 cut(s) 881
BssECI CCNNGG 9 cut(s) 43, 88, 136, 259, 260, 368, 437, 438, 905
BssHII GCGCGC 1 cut(s) 170
BssMI GATC 5 cut(s) 292, 620, 671, 682, 760
BssNI GRCGYC 3 cut(s) 120, 383, 443
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 774, 882
Bst4CI ACNGT 6 cut(s) 115, 602, 692, 751, 822, 906
Bst6I CTCTTC 2 cut(s) 461, 563
BstACI GRCGYC 3 cut(s) 120, 383, 443
BstAPI GCANNNNNTGC 1 cut(s) 709
BstC8I GCNNGC 3 cut(s) 172, 804, 917
BstDEI CTNAG 4 cut(s) 807, 870, 929, 969
BstDSI CCRYGG 1 cut(s) 905
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 6 cut(s) 511, 517, 583, 670, 733, 789
BstFNI CGCG 4 cut(s) 35, 170, 172, 193
BstHHI GCGC 3 cut(s) 172, 174, 195
BstKTI GATC 5 cut(s) 295, 623, 674, 685, 763
BstMAI GTCTC 2 cut(s) 681, 1009
BstMBI GATC 5 cut(s) 292, 620, 671, 682, 760
BstMCI CGRYCG 2 cut(s) 94, 390
BstMWI GCNNNNNNNGC 6 cut(s) 32, 141, 364, 413, 709, 925
BstNI CCWGG 2 cut(s) 774, 882
BstNSI RCATGY 2 cut(s) 70, 806
BstSCI CCNGG 8 cut(s) 259, 260, 378, 436, 437, 610, 772, 880
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 1 cut(s) 629
BstUI CGCG 4 cut(s) 35, 170, 172, 193
BstV1I GCAGC 2 cut(s) 218, 912
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 91
BsuRI GGCC 6 cut(s) 93, 358, 367, 416, 610, 880
BtgI CCRYGG 1 cut(s) 905
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 6 cut(s) 511, 517, 583, 670, 733, 789
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 4 cut(s) 19, 607, 697, 756
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 172, 804, 917
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 3 cut(s) 172, 174, 195
Cfr13I GGNCC 6 cut(s) 356, 365, 415, 608, 770, 884
Cfr9I CCCGGG 2 cut(s) 260, 437
CseI GACGC 2 cut(s) 372, 432
Csp6I GTAC 2 cut(s) 61, 598
CviAII CATG 3 cut(s) 67, 148, 803
CviQI GTAC 2 cut(s) 61, 598
DdeI CTNAG 4 cut(s) 807, 870, 929, 969
DpnI GATC 5 cut(s) 294, 622, 673, 684, 762
DpnII GATC 5 cut(s) 292, 620, 671, 682, 760
EaeI YGGCCR 1 cut(s) 91
EagI CGGCCG 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 461, 563
EarI CTCTTC 2 cut(s) 461, 563
EciI GGCGGA 1 cut(s) 543
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 860
Eco47I GGWCC 2 cut(s) 770, 884
Eco52I CGGCCG 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 4 cut(s) 209, 260, 437, 846
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 772, 880
EcoRV GATATC 1 cut(s) 860
EcoT14I CCWWGG 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 3 cut(s) 70, 151, 806
FaqI GGGAC 2 cut(s) 323, 424
FatI CATG 3 cut(s) 66, 147, 802
FauI CCCGC 3 cut(s) 167, 400, 443
FblI GTMKAC 2 cut(s) 117, 123
Fnu4HI GCNGC 9 cut(s) 94, 142, 145, 196, 199, 232, 523, 526, 926
FokI GGATG 6 cut(s) 518, 524, 590, 677, 740, 796
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 9 cut(s) 94, 142, 145, 196, 199, 232, 523, 526, 926
GlaI GCGC 3 cut(s) 171, 173, 194
GluI GCNGC 9 cut(s) 94, 142, 145, 196, 199, 232, 523, 526, 926
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 6 cut(s) 93, 358, 367, 416, 610, 880
HapII CCGG 7 cut(s) 261, 272, 335, 380, 438, 611, 618
HgaI GACGC 2 cut(s) 372, 432
HhaI GCGC 3 cut(s) 172, 174, 195
Hin1I GRCGYC 3 cut(s) 120, 383, 443
Hin1II CATG 3 cut(s) 70, 151, 806
Hin6I GCGC 3 cut(s) 170, 172, 193
HinP1I GCGC 3 cut(s) 170, 172, 193
HincII GTYRAC 2 cut(s) 118, 124
HindII GTYRAC 2 cut(s) 118, 124
HinfI GANTC 3 cut(s) 30, 284, 890
HpaII CCGG 7 cut(s) 261, 272, 335, 380, 438, 611, 618
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 118, 124
Hpy188I TCNGA 5 cut(s) 221, 303, 392, 760, 871
Hpy188III TCNNGA 4 cut(s) 34, 618, 686, 887
Hpy8I GTNNAC 2 cut(s) 118, 124
Hpy99I CGWCG 7 cut(s) 10, 119, 122, 125, 242, 388, 448
HpyCH4III ACNGT 6 cut(s) 115, 602, 692, 751, 822, 906
HpyCH4IV ACGT 2 cut(s) 18, 120
HpyCH4V TGCA 3 cut(s) 70, 712, 802
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 141, 364, 413, 709, 925
HpyF3I CTNAG 4 cut(s) 807, 870, 929, 969
HpySE526I ACGT 2 cut(s) 18, 120
Hsp92I GRCGYC 3 cut(s) 120, 383, 443
Hsp92II CATG 3 cut(s) 70, 151, 806
HspAI GCGC 3 cut(s) 170, 172, 193
Kpn2I TCCGGA 1 cut(s) 617
Kzo9I GATC 5 cut(s) 292, 620, 671, 682, 760
LmnI GCTCC 3 cut(s) 45, 255, 342
Lsp1109I GCAGC 2 cut(s) 218, 912
LweI GCATC 3 cut(s) 183, 774, 847
MaeII ACGT 2 cut(s) 18, 120
MaeIII GTNAC 3 cut(s) 14, 692, 979
MalI GATC 5 cut(s) 294, 622, 673, 684, 762
MboI GATC 5 cut(s) 292, 620, 671, 682, 760
MboII GAAGA 8 cut(s) 62, 169, 475, 478, 577, 580, 681, 731
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 3 cut(s) 252, 404, 629
MluCI AATT 2 cut(s) 797, 989
MlyI GAGTC 1 cut(s) 899
MmeI TCCRAC 1 cut(s) 370
MroI TCCGGA 1 cut(s) 617
MslI CAYNNNNRTG 1 cut(s) 848
MspI CCGG 7 cut(s) 261, 272, 335, 380, 438, 611, 618
MspR9I CCNGG 8 cut(s) 261, 262, 380, 438, 439, 612, 774, 882
Mva1269I GAATGC 1 cut(s) 345
MvaI CCWGG 2 cut(s) 774, 882
MvnI CGCG 4 cut(s) 35, 170, 172, 193
MwoI GCNNNNNNNGC 6 cut(s) 32, 141, 364, 413, 709, 925
NciI CCSGG 6 cut(s) 261, 262, 380, 438, 439, 612
NdeII GATC 5 cut(s) 292, 620, 671, 682, 760
NlaIII CATG 3 cut(s) 70, 151, 806
NlaIV GGNNCC 3 cut(s) 266, 616, 628
NmeAIII GCCGAG 4 cut(s) 69, 117, 383, 393
NmuCI GTSAC 2 cut(s) 14, 692
NruI TCGCGA 1 cut(s) 35
NspI RCATGY 2 cut(s) 70, 806
OliI CACNNNNGTG 1 cut(s) 848
PaeI GCATGC 1 cut(s) 806
PaeR7I CTCGAG 2 cut(s) 209, 846
PauI GCGCGC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 30, 284
PkrI GCNGC 9 cut(s) 95, 143, 146, 197, 200, 233, 524, 527, 927
PleI GAGTC 1 cut(s) 898
PpsI GAGTC 1 cut(s) 898
Psp6I CCWGG 2 cut(s) 772, 880
PspGI CCWGG 2 cut(s) 772, 880
PspN4I GGNNCC 3 cut(s) 266, 616, 628
PspPI GGNCC 6 cut(s) 356, 365, 415, 608, 770, 884
PspXI VCTCGAGB 2 cut(s) 209, 846
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 292
PteI GCGCGC 1 cut(s) 170
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 2 cut(s) 62, 599
RsaNI GTAC 2 cut(s) 61, 598
RseI CAYNNNNRTG 1 cut(s) 848
SalI GTCGAC 2 cut(s) 116, 122
SatI GCNGC 9 cut(s) 94, 142, 145, 196, 199, 232, 523, 526, 926
Sau3AI GATC 5 cut(s) 292, 620, 671, 682, 760
Sau96I GGNCC 6 cut(s) 356, 365, 415, 608, 770, 884
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 1 cut(s) 899
ScrFI CCNGG 8 cut(s) 261, 262, 380, 438, 439, 612, 774, 882
SduI GDGCHC 3 cut(s) 252, 404, 629
SfaNI GCATC 3 cut(s) 183, 774, 847
SfcI CTRYAG 1 cut(s) 747
SfiI GGCCNNNNNGGCC 1 cut(s) 364
Sfr274I CTCGAG 2 cut(s) 209, 846
SgrDI CGTCGACG 1 cut(s) 116
SinI GGWCC 2 cut(s) 770, 884
SlaI CTCGAG 2 cut(s) 209, 846
SmaI CCCGGG 2 cut(s) 262, 439
SmiMI CAYNNNNRTG 1 cut(s) 848
SmlI CTYRAG 2 cut(s) 209, 846
SmoI CTYRAG 2 cut(s) 209, 846
SphI GCATGC 1 cut(s) 806
Sse9I AATT 2 cut(s) 797, 989
StyD4I CCNGG 8 cut(s) 259, 260, 378, 436, 437, 610, 772, 880
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 6 cut(s) 115, 602, 692, 751, 822, 906
TaiI ACGT 2 cut(s) 21, 123
TaqI TCGA 8 cut(s) 57, 117, 123, 210, 240, 282, 685, 847
TaqII GACCGA 1 cut(s) 376
TasI AATT 2 cut(s) 797, 989
TatI WGTACW 1 cut(s) 60
TauI GCSGC 7 cut(s) 96, 144, 147, 198, 201, 525, 528
TfiI GAWTC 2 cut(s) 30, 284
TscAI CASTG 4 cut(s) 19, 607, 697, 756
TseFI GTSAC 2 cut(s) 14, 692
TseI GCWGC 2 cut(s) 231, 925
Tsp45I GTSAC 2 cut(s) 14, 692
TspDTI ATGAA 2 cut(s) 164, 1005
TspMI CCCGGG 2 cut(s) 260, 437
TspRI CASTG 4 cut(s) 19, 607, 697, 756
VpaK11BI GGWCC 2 cut(s) 770, 884
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 1 cut(s) 989
XceI RCATGY 2 cut(s) 70, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XhoI CTCGAG 2 cut(s) 209, 846
XmaI CCCGGG 2 cut(s) 260, 437
XmiI GTMKAC 2 cut(s) 117, 123
ZraI GACGTC 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.