RLG00000012769

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015944
Physical Location & Seq
Forward (+)
22204431 .. 22207617
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012769

Sequence Viewer

Length: 1017 bp
ATGACGACGAGCAGTGACGTGGAGGCCGGATTCGCGAAGCTCCAAGGCGAAGACTTTGAGTACTACATGCAGACCTACTCCATAATCCTCGGCCGCAACTCCAAGAAATCGACGGTGGACGTCGACCTGTCCAGCCTCGGCGGCGGAATGAACATCTCCCGCCACCACGCGCGCATCTTCTACGACTTCACGCGCCGCCGCTTCGCGCTGGAGGTTCTCGGGAAGAACGGGTGTCTCGTCGAGGGGGTTCTCCACCTCCCCGGAAACCCTCCGGTCAAGCTCGATTCGCAGGATCTGCTTCAGATTGGGGATAAAGAGTTTTACTTTTTGTTGCCGGTGAGGAGTATTCTGGGTGGGCCTATTGGGCCCAGGCATTACGCGGCGGCGGTCGGGGTTTCGGGCTCGGCGGGGACGGCCCATTATGGATATGGGCATCCGGGCGCGTCGGCTGGGTCGGTGGCAAAGAAGAGTAGGGGGAGGGACTTTTATGAGGAGGAATATGAGGATGAGGATGATATTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGTGGCAGTGGGAAGAAGAGGAGGGAAGGTTATGAGGGTTATGGGTACAGTGGTGGGCCGGGTTCTGGATCGGGCACCAAGTCGGGTTCTTTGGCTTTAGAAAAGAAGGGAGATGGAAGATCAAGGGTTGATCGAGACAGTGACAATCAGCAACTTCTGCATTTGGAAGAAAAGGATGTGGTGTCATCTGTTGCTACGGTGCTCTCTGATCTTTGTGGTCCTGGCGAATGGATGCCTATGGAGAAACTGCATGCTGAGCTGGTGGAACAGTATAGTGGTGTTTGGCATCACACTCGAGTGAGGAGATATCTTACTTCTGAGGACTGGCCTGGTCCCGAGTCAAAGGGGAAACCATGGTATGGCTTGCTTATGCTGCTAAGAAAATACCCAGAACATTTTGTCATCAACACAAGGTCTAAGGCCCGTGTAACTCTGGAATTTGTATCTCTTGTCTCGTTGCTTTCATAA

Protein Analysis

339

Amino Acids

36.71

Weight (kDa)

6.43

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 29 - 103 2.8e-10 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07220
fragaria_vesca FvH4_2g18540
malus_domestica MD05G1171600.v1.1 MD10G1159800.v1.1
prunus_persica Prupe.8G198900_v2.0.a1
pyrus_communis pycom05g15830 pycom10g13800
rosa_chinensis RchiOBHm_Chr6g0284101
rosa_laevigata RLG00000012769
rosa_multiflora Rmu_sc0003778.1_g000044 Rmu_sc0015649.1_g000003
rosa_roxburghii Rroxscaffold_7G00184930
rosa_rugosa Rorug06G0160700.1
rosa_samantha Rh6BG274200
rosa_wichuraiana Rw6G023540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 623
AccB7I CCANNNNNTGG 1 cut(s) 908
AccI GTMKAC 1 cut(s) 123
AccII CGCG 7 cut(s) 35, 170, 172, 193, 206, 380, 443
AclWI GGATC 2 cut(s) 300, 625
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 1 cut(s) 986
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 2 cut(s) 62, 596
AfiI CCNNNNNNNGG 2 cut(s) 614, 908
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 3 cut(s) 368, 769, 877
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 3 cut(s) 40, 280, 808
AluI AGCT 3 cut(s) 40, 280, 808
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 3 cut(s) 239, 678, 1006
AlwI GGATC 2 cut(s) 300, 625
AlwNI CAGNNNCTG 1 cut(s) 295
Ama87I CYCGRG 3 cut(s) 218, 843, 884
AoxI GGCC 8 cut(s) 24, 91, 356, 365, 414, 605, 875, 969
ApaI GGGCCC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 922
ApoI RAATTY 1 cut(s) 986
AspLEI GCGC 5 cut(s) 172, 174, 195, 208, 443
AspS9I GGNCC 8 cut(s) 356, 365, 366, 415, 605, 767, 881, 970
AsuC2I CCSGG 3 cut(s) 261, 438, 609
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 3 cut(s) 218, 843, 884
AvaII GGWCC 2 cut(s) 767, 881
BaeGI GKGCMC 2 cut(s) 369, 626
BaeI ACNNNNGTAYC 2 cut(s) 586, 619
BanI GGYRCC 1 cut(s) 623
BanII GRGCYC 2 cut(s) 369, 404
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 1 cut(s) 909
BccI CCATC 1 cut(s) 656
BceAI ACGGC 1 cut(s) 429
BcgI CGANNNNNNTGC 2 cut(s) 824, 858
BciT130I CCWGG 3 cut(s) 370, 771, 879
BcnI CCSGG 3 cut(s) 261, 438, 609
BcoDI GTCTC 3 cut(s) 239, 678, 1006
BglI GCCNNNNNGGC 2 cut(s) 141, 364
BlpI GCTNAGC 1 cut(s) 804
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 6 cut(s) 261, 370, 438, 609, 771, 879
Bme18I GGWCC 2 cut(s) 767, 881
BmeT110I CYCGRG 3 cut(s) 218, 843, 884
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 8 cut(s) 356, 365, 366, 415, 605, 767, 881, 970
BmiI GGNNCC 3 cut(s) 367, 625, 883
BmrFI CCNGG 6 cut(s) 261, 370, 438, 609, 771, 879
BmsI GCATC 4 cut(s) 183, 442, 771, 844
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 804
BpuMI CCSGG 3 cut(s) 261, 438, 609
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 6 cut(s) 43, 88, 136, 259, 368, 902
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 908
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 878
BseBI CCWGG 3 cut(s) 370, 771, 879
BseDI CCNNGG 6 cut(s) 43, 88, 136, 259, 368, 902
BseGI GGATG 5 cut(s) 433, 511, 517, 730, 786
BseLI CCNNNNNNNGG 2 cut(s) 614, 908
BseMII CTCAG 2 cut(s) 795, 858
BseNI ACTGG 1 cut(s) 878
BsePI GCGCGC 1 cut(s) 170
BseRI GAGGAG 4 cut(s) 355, 506, 583, 865
BseSI GKGCMC 2 cut(s) 369, 626
BseX3I CGGCCG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 909
BseYI CCCAGC 1 cut(s) 449
Bsh1236I CGCG 7 cut(s) 35, 170, 172, 193, 206, 380, 443
Bsh1285I CGRYCG 2 cut(s) 94, 390
BshFI GGCC 8 cut(s) 26, 93, 358, 367, 416, 607, 877, 971
BshNI GGYRCC 1 cut(s) 623
BsiEI CGRYCG 2 cut(s) 94, 390
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 3 cut(s) 218, 843, 884
BsiSI CCGG 6 cut(s) 27, 261, 272, 335, 437, 608
BslFI GGGAC 3 cut(s) 424, 494, 867
BslI CCNNNNNNNGG 2 cut(s) 614, 908
BsmAI GTCTC 3 cut(s) 239, 678, 1006
BsmFI GGGAC 3 cut(s) 424, 494, 867
BsnI GGCC 8 cut(s) 26, 93, 358, 367, 416, 607, 877, 971
BsoBI CYCGRG 3 cut(s) 218, 843, 884
Bsp120I GGGCCC 1 cut(s) 365
Bsp1286I GDGCHC 4 cut(s) 369, 404, 626, 753
Bsp143I GATC 5 cut(s) 292, 617, 668, 679, 757
Bsp1720I GCTNAGC 1 cut(s) 804
Bsp19I CCATGG 1 cut(s) 902
Bsp68I TCGCGA 1 cut(s) 35
BspANI GGCC 8 cut(s) 26, 93, 358, 367, 416, 607, 877, 971
BspCNI CTCAG 2 cut(s) 796, 859
BspFNI CGCG 7 cut(s) 35, 170, 172, 193, 206, 380, 443
BspLI GGNNCC 3 cut(s) 367, 625, 883
BspPI GGATC 2 cut(s) 300, 625
BspT107I GGYRCC 1 cut(s) 623
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 878
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 6 cut(s) 43, 88, 136, 259, 368, 902
BssHII GCGCGC 1 cut(s) 170
BssMI GATC 5 cut(s) 292, 617, 668, 679, 757
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 43, 902
Bst2UI CCWGG 3 cut(s) 370, 771, 879
Bst4CI ACNGT 5 cut(s) 115, 599, 689, 748, 819
Bst6I CTCTTC 2 cut(s) 461, 560
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 2 cut(s) 295, 706
BstC8I GCNNGC 3 cut(s) 172, 801, 914
BstDEI CTNAG 4 cut(s) 804, 867, 926, 966
BstDSI CCRYGG 1 cut(s) 902
BstF5I GGATG 5 cut(s) 433, 511, 517, 730, 786
BstFNI CGCG 7 cut(s) 35, 170, 172, 193, 206, 380, 443
BstHHI GCGC 5 cut(s) 172, 174, 195, 208, 443
BstKTI GATC 5 cut(s) 295, 620, 671, 682, 760
BstMAI GTCTC 3 cut(s) 239, 678, 1006
BstMBI GATC 5 cut(s) 292, 617, 668, 679, 757
BstMCI CGRYCG 2 cut(s) 94, 390
BstNI CCWGG 3 cut(s) 370, 771, 879
BstNSI RCATGY 2 cut(s) 70, 803
BstSCI CCNGG 6 cut(s) 259, 368, 436, 607, 769, 877
BstSLI GKGCMC 2 cut(s) 369, 626
BstUI CGCG 7 cut(s) 35, 170, 172, 193, 206, 380, 443
BstV1I GCAGC 1 cut(s) 909
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 91
BsuRI GGCC 8 cut(s) 26, 93, 358, 367, 416, 607, 877, 971
BtgI CCRYGG 1 cut(s) 902
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 5 cut(s) 433, 511, 517, 730, 786
BtsI GCAGTG 2 cut(s) 19, 562
BtsIMutI CAGTG 4 cut(s) 19, 562, 604, 694
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 172, 801, 914
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 5 cut(s) 172, 174, 195, 208, 443
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 8 cut(s) 356, 365, 366, 415, 605, 767, 881, 970
CseI GACGC 1 cut(s) 432
Csp6I GTAC 2 cut(s) 61, 595
CviAII CATG 3 cut(s) 67, 800, 903
CviQI GTAC 2 cut(s) 61, 595
DdeI CTNAG 4 cut(s) 804, 867, 926, 966
DpnI GATC 5 cut(s) 294, 619, 670, 681, 759
DpnII GATC 5 cut(s) 292, 617, 668, 679, 757
EaeI YGGCCR 1 cut(s) 91
EagI CGGCCG 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 461, 560
EarI CTCTTC 2 cut(s) 461, 560
EciI GGCGGA 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 43, 902
Eco24I GRGCYC 2 cut(s) 369, 404
Eco32I GATATC 1 cut(s) 857
Eco47I GGWCC 2 cut(s) 767, 881
Eco52I CGGCCG 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 3 cut(s) 218, 843, 884
EcoRII CCWGG 3 cut(s) 368, 769, 877
EcoRV GATATC 1 cut(s) 857
EcoT14I CCWWGG 2 cut(s) 43, 902
EcoT38I GRGCYC 2 cut(s) 369, 404
ErhI CCWWGG 2 cut(s) 43, 902
FaeI CATG 3 cut(s) 70, 803, 906
FaqI GGGAC 3 cut(s) 424, 494, 867
FatI CATG 3 cut(s) 66, 799, 902
FauI CCCGC 2 cut(s) 167, 400
FblI GTMKAC 1 cut(s) 123
FokI GGATG 5 cut(s) 420, 518, 524, 737, 793
FriOI GRGCYC 2 cut(s) 369, 404
GlaI GCGC 5 cut(s) 171, 173, 194, 207, 442
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 8 cut(s) 26, 93, 358, 367, 416, 607, 877, 971
HapII CCGG 6 cut(s) 27, 261, 272, 335, 437, 608
HgaI GACGC 1 cut(s) 432
HhaI GCGC 5 cut(s) 172, 174, 195, 208, 443
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 3 cut(s) 70, 803, 906
Hin6I GCGC 5 cut(s) 170, 172, 193, 206, 441
HinP1I GCGC 5 cut(s) 170, 172, 193, 206, 441
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 30, 284, 887
HpaII CCGG 6 cut(s) 27, 261, 272, 335, 437, 608
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 118, 124
Hpy188I TCNGA 3 cut(s) 303, 757, 868
Hpy188III TCNNGA 6 cut(s) 34, 220, 615, 683, 884, 983
Hpy8I GTNNAC 2 cut(s) 118, 124
Hpy99I CGWCG 5 cut(s) 10, 115, 125, 242, 448
HpyAV CCTTC 2 cut(s) 569, 649
HpyCH4III ACNGT 5 cut(s) 115, 599, 689, 748, 819
HpyCH4IV ACGT 2 cut(s) 18, 120
HpyCH4V TGCA 3 cut(s) 70, 709, 799
HpyF3I CTNAG 4 cut(s) 804, 867, 926, 966
HpySE526I ACGT 2 cut(s) 18, 120
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 3 cut(s) 70, 803, 906
HspAI GCGC 5 cut(s) 170, 172, 193, 206, 441
Kzo9I GATC 5 cut(s) 292, 617, 668, 679, 757
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 909
LweI GCATC 4 cut(s) 183, 442, 771, 844
MaeII ACGT 2 cut(s) 18, 120
MaeIII GTNAC 3 cut(s) 14, 689, 976
MalI GATC 5 cut(s) 294, 619, 670, 681, 759
MboI GATC 5 cut(s) 292, 617, 668, 679, 757
MboII GAAGA 8 cut(s) 62, 169, 235, 478, 574, 577, 678, 728
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 4 cut(s) 369, 404, 626, 753
MluCI AATT 1 cut(s) 986
MlyI GAGTC 1 cut(s) 896
MslI CAYNNNNRTG 1 cut(s) 845
MspI CCGG 6 cut(s) 27, 261, 272, 335, 437, 608
MspR9I CCNGG 6 cut(s) 261, 370, 438, 609, 771, 879
MvaI CCWGG 3 cut(s) 370, 771, 879
MvnI CGCG 7 cut(s) 35, 170, 172, 193, 206, 380, 443
NciI CCSGG 3 cut(s) 261, 438, 609
NcoI CCATGG 1 cut(s) 902
NdeII GATC 5 cut(s) 292, 617, 668, 679, 757
NlaIII CATG 3 cut(s) 70, 803, 906
NlaIV GGNNCC 3 cut(s) 367, 625, 883
NmeAIII GCCGAG 3 cut(s) 69, 117, 383
NmuCI GTSAC 2 cut(s) 14, 689
NruI TCGCGA 1 cut(s) 35
NspI RCATGY 2 cut(s) 70, 803
OliI CACNNNNGTG 1 cut(s) 845
PaeI GCATGC 1 cut(s) 803
PaeR7I CTCGAG 1 cut(s) 843
PauI GCGCGC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 2 cut(s) 30, 284
PflMI CCANNNNNTGG 1 cut(s) 908
PleI GAGTC 1 cut(s) 895
PpsI GAGTC 1 cut(s) 895
Psp6I CCWGG 3 cut(s) 368, 769, 877
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 3 cut(s) 368, 769, 877
PspN4I GGNNCC 3 cut(s) 367, 625, 883
PspOMI GGGCCC 1 cut(s) 365
PspPI GGNCC 8 cut(s) 356, 365, 366, 415, 605, 767, 881, 970
PspXI VCTCGAGB 1 cut(s) 843
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 292
PteI GCGCGC 1 cut(s) 170
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 2 cut(s) 62, 596
RsaNI GTAC 2 cut(s) 61, 595
RseI CAYNNNNRTG 1 cut(s) 845
SalI GTCGAC 1 cut(s) 122
Sau3AI GATC 5 cut(s) 292, 617, 668, 679, 757
Sau96I GGNCC 8 cut(s) 356, 365, 366, 415, 605, 767, 881, 970
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 6 cut(s) 261, 370, 438, 609, 771, 879
SduI GDGCHC 4 cut(s) 369, 404, 626, 753
SfaNI GCATC 4 cut(s) 183, 442, 771, 844
SfiI GGCCNNNNNGGCC 1 cut(s) 364
Sfr274I CTCGAG 1 cut(s) 843
SinI GGWCC 2 cut(s) 767, 881
SlaI CTCGAG 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
SphI GCATGC 1 cut(s) 803
Sse9I AATT 1 cut(s) 986
StyD4I CCNGG 6 cut(s) 259, 368, 436, 607, 769, 877
StyI CCWWGG 2 cut(s) 43, 902
TaaI ACNGT 5 cut(s) 115, 599, 689, 748, 819
TaiI ACGT 2 cut(s) 21, 123
TaqI TCGA 6 cut(s) 110, 123, 240, 282, 682, 844
TasI AATT 1 cut(s) 986
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 30, 284
TscAI CASTG 4 cut(s) 19, 562, 604, 694
TseFI GTSAC 2 cut(s) 14, 689
TseI GCWGC 1 cut(s) 922
Tsp45I GTSAC 2 cut(s) 14, 689
TspDTI ATGAA 2 cut(s) 164, 1002
TspRI CASTG 4 cut(s) 19, 562, 604, 694
Van91I CCANNNNNTGG 1 cut(s) 908
VpaK11BI GGWCC 2 cut(s) 767, 881
XapI RAATTY 1 cut(s) 986
XceI RCATGY 2 cut(s) 70, 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 843
XmiI GTMKAC 1 cut(s) 123
ZraI GACGTC 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.