RchiOBHm_Chr6g0284101

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015944
Physical Location & Seq
Reverse (-)
47386298 .. 47389816
3519 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25478

Sequence Viewer

Length: 1011 bp
ATGACGACGAGCAGTGACGTGGAGGCCGGATTCGCGAAGCTCCAAGGCGAAGACTTTGAGTACTACATGCAGACCTACTCCATAATCCTCGGCCGCAACTCCAAGAAGTCGACGGTGGACGTCGACCTCTCCAGCCTCGGCGGCGGAATGAACATCTCCCGCCACCACGCGCGCATCTTCTACGACTTCACGCGCCGCCGCTTCGCTCTGGAGGTTCTCGGGAAGAACGGGTGTCTCGTCGAGGGGGTGCTCCACCTCCCCGGAAACCCTCCGGTCAAGCTCGATTCGCAGGATCTGCTTCAGATTGGGGATAAAGAGTTTTACTTTTTGTTGCCGGTGAGGAGTATTCTGGGTGGGCCTATTGGGCCCAGGCATTACGCGGCGGCGGTCGGGGTTTCCGGCTCGGCGGGGACGGCCCATTATGGATATGGGCATCCGGGCGCGTCGGCAGGGTCGGTGGCGAAGAAGAGTAGGGGGAGGGAGTTTTATGAGGACGAATATGAGGATGAGGATGATATTGGCGGCGGGGGCGGCGGCGGCGGCAGTGGTAGTGGGAAGAAGAGGAGGGAAGGGTATGAGGGTTATGGGTACAGTGGTGGGCCGGGTTCTGGATCGGGCACCAAGTCGGGTTCCTTGGCTTTAGAAAAGAAGGGAGATGGAAGATCAAGGGTTGATCGAGACAGTGACAATCAGCAACTTCTGCATTTGGAAGAAAAGGATGTGGTGTCATCTGTTGCTACAGTGCTCTCTGATCTTTGTGGTCCTGGCGAATGGATGCCTATGGAGAAACTGCATGCTGAGTTGGTGGAACAGTATAGTGGTGTTTGGCATCACACTCGAGTGAGGAGATATCTTACTTCTGAGGACTGGCCTGGTCCCGAATCAAAGGGGAAACCATGGTACGGCTTGCTTATGCTGCTAAGGAAATACCCAGAACATTTTGTCATCAACACAAGGTCTAAGAATCGTGTAACTCTGGAATTTGTATCTCTTGTTTCGTTGCTTTCATAA

Protein Analysis

336

Amino Acids

36.63

Weight (kDa)

6.43

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 29 - 103 2.8e-10 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07220
fragaria_vesca FvH4_2g18540
malus_domestica MD05G1171600.v1.1 MD10G1159800.v1.1
prunus_persica Prupe.8G198900_v2.0.a1
pyrus_communis pycom05g15830 pycom10g13800
rosa_chinensis RchiOBHm_Chr6g0284101
rosa_laevigata RLG00000012769
rosa_multiflora Rmu_sc0003778.1_g000044 Rmu_sc0015649.1_g000003
rosa_roxburghii Rroxscaffold_7G00184930
rosa_rugosa Rorug06G0160700.1
rosa_samantha Rh6BG274200
rosa_wichuraiana Rw6G023540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 617
AccI GTMKAC 2 cut(s) 110, 123
AccII CGCG 6 cut(s) 35, 170, 172, 193, 380, 443
AclWI GGATC 2 cut(s) 300, 619
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 1 cut(s) 980
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 3 cut(s) 62, 590, 902
AfiI CCNNNNNNNGG 2 cut(s) 608, 902
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 3 cut(s) 368, 763, 871
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 2 cut(s) 40, 280
AluI AGCT 2 cut(s) 40, 280
Alw21I GWGCWC 2 cut(s) 252, 747
Alw26I GTCTC 2 cut(s) 239, 672
AlwI GGATC 2 cut(s) 300, 619
AlwNI CAGNNNCTG 1 cut(s) 295
Ama87I CYCGRG 2 cut(s) 218, 837
AoxI GGCC 7 cut(s) 24, 91, 356, 365, 414, 599, 869
ApaI GGGCCC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 916
ApoI RAATTY 1 cut(s) 980
AspLEI GCGC 4 cut(s) 172, 174, 195, 443
AspS9I GGNCC 7 cut(s) 356, 365, 366, 415, 599, 761, 875
AsuC2I CCSGG 3 cut(s) 261, 438, 603
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 2 cut(s) 218, 837
AvaII GGWCC 2 cut(s) 761, 875
BaeGI GKGCMC 2 cut(s) 369, 620
BaeI ACNNNNGTAYC 2 cut(s) 580, 613
BanI GGYRCC 1 cut(s) 617
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 252, 747
BbvI GCAGC 1 cut(s) 903
BccI CCATC 1 cut(s) 650
BceAI ACGGC 2 cut(s) 429, 919
BcgI CGANNNNNNTGC 2 cut(s) 818, 852
BciT130I CCWGG 3 cut(s) 370, 765, 873
BcnI CCSGG 3 cut(s) 261, 438, 603
BcoDI GTCTC 2 cut(s) 239, 672
BfmI CTRYAG 1 cut(s) 738
BglI GCCNNNNNGGC 2 cut(s) 141, 364
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 6 cut(s) 261, 370, 438, 603, 765, 873
Bme18I GGWCC 2 cut(s) 761, 875
BmeT110I CYCGRG 2 cut(s) 218, 837
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 7 cut(s) 356, 365, 366, 415, 599, 761, 875
BmiI GGNNCC 4 cut(s) 367, 619, 631, 877
BmrFI CCNGG 6 cut(s) 261, 370, 438, 603, 765, 873
BmsI GCATC 4 cut(s) 183, 442, 765, 838
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 2 cut(s) 115, 230
Bpu10I CCTNAGC 1 cut(s) 920
BpuMI CCSGG 3 cut(s) 261, 438, 603
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 7 cut(s) 43, 88, 136, 259, 368, 633, 896
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 2 cut(s) 608, 902
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 872
BseBI CCWGG 3 cut(s) 370, 765, 873
BseDI CCNNGG 7 cut(s) 43, 88, 136, 259, 368, 633, 896
BseGI GGATG 5 cut(s) 433, 511, 517, 724, 780
BseLI CCNNNNNNNGG 2 cut(s) 608, 902
BseMII CTCAG 2 cut(s) 789, 852
BseNI ACTGG 1 cut(s) 872
BsePI GCGCGC 1 cut(s) 170
BseRI GAGGAG 3 cut(s) 355, 577, 859
BseSI GKGCMC 2 cut(s) 369, 620
BseX3I CGGCCG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 903
Bsh1236I CGCG 6 cut(s) 35, 170, 172, 193, 380, 443
Bsh1285I CGRYCG 2 cut(s) 94, 390
BshFI GGCC 7 cut(s) 26, 93, 358, 367, 416, 601, 871
BshNI GGYRCC 1 cut(s) 617
BsiEI CGRYCG 2 cut(s) 94, 390
BsiHKAI GWGCWC 2 cut(s) 252, 747
BsiHKCI CYCGRG 2 cut(s) 218, 837
BsiSI CCGG 7 cut(s) 27, 261, 272, 335, 399, 437, 602
BslFI GGGAC 2 cut(s) 424, 861
BslI CCNNNNNNNGG 2 cut(s) 608, 902
BsmAI GTCTC 2 cut(s) 239, 672
BsmFI GGGAC 2 cut(s) 424, 861
BsnI GGCC 7 cut(s) 26, 93, 358, 367, 416, 601, 871
BsoBI CYCGRG 2 cut(s) 218, 837
Bsp120I GGGCCC 1 cut(s) 365
Bsp1286I GDGCHC 4 cut(s) 252, 369, 620, 747
Bsp143I GATC 5 cut(s) 292, 611, 662, 673, 751
Bsp19I CCATGG 1 cut(s) 896
Bsp68I TCGCGA 1 cut(s) 35
BspANI GGCC 7 cut(s) 26, 93, 358, 367, 416, 601, 871
BspCNI CTCAG 2 cut(s) 790, 853
BspFNI CGCG 6 cut(s) 35, 170, 172, 193, 380, 443
BspLI GGNNCC 4 cut(s) 367, 619, 631, 877
BspPI GGATC 2 cut(s) 300, 619
BspT107I GGYRCC 1 cut(s) 617
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 872
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 7 cut(s) 43, 88, 136, 259, 368, 633, 896
BssHII GCGCGC 1 cut(s) 170
BssMI GATC 5 cut(s) 292, 611, 662, 673, 751
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 3 cut(s) 43, 633, 896
Bst2UI CCWGG 3 cut(s) 370, 765, 873
Bst4CI ACNGT 5 cut(s) 115, 593, 683, 742, 813
Bst6I CTCTTC 2 cut(s) 461, 554
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 2 cut(s) 295, 700
BstC8I GCNNGC 3 cut(s) 172, 795, 908
BstDEI CTNAG 4 cut(s) 798, 861, 920, 960
BstDSI CCRYGG 1 cut(s) 896
BstF5I GGATG 5 cut(s) 433, 511, 517, 724, 780
BstFNI CGCG 6 cut(s) 35, 170, 172, 193, 380, 443
BstHHI GCGC 4 cut(s) 172, 174, 195, 443
BstKTI GATC 5 cut(s) 295, 614, 665, 676, 754
BstMAI GTCTC 2 cut(s) 239, 672
BstMBI GATC 5 cut(s) 292, 611, 662, 673, 751
BstMCI CGRYCG 2 cut(s) 94, 390
BstNI CCWGG 3 cut(s) 370, 765, 873
BstNSI RCATGY 2 cut(s) 70, 797
BstSCI CCNGG 6 cut(s) 259, 368, 436, 601, 763, 871
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 2 cut(s) 369, 620
BstUI CGCG 6 cut(s) 35, 170, 172, 193, 380, 443
BstV1I GCAGC 1 cut(s) 903
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 91
BsuRI GGCC 7 cut(s) 26, 93, 358, 367, 416, 601, 871
BtgI CCRYGG 1 cut(s) 896
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 5 cut(s) 433, 511, 517, 724, 780
BtsI GCAGTG 2 cut(s) 19, 550
BtsIMutI CAGTG 5 cut(s) 19, 550, 598, 688, 747
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 172, 795, 908
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 4 cut(s) 172, 174, 195, 443
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 7 cut(s) 356, 365, 366, 415, 599, 761, 875
CseI GACGC 1 cut(s) 432
Csp6I GTAC 3 cut(s) 61, 589, 901
CviAII CATG 3 cut(s) 67, 794, 897
CviQI GTAC 3 cut(s) 61, 589, 901
DdeI CTNAG 4 cut(s) 798, 861, 920, 960
DpnI GATC 5 cut(s) 294, 613, 664, 675, 753
DpnII GATC 5 cut(s) 292, 611, 662, 673, 751
EaeI YGGCCR 1 cut(s) 91
EagI CGGCCG 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 461, 554
EarI CTCTTC 2 cut(s) 461, 554
EciI GGCGGA 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 43, 633, 896
Eco24I GRGCYC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 851
Eco47I GGWCC 2 cut(s) 761, 875
Eco52I CGGCCG 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 2 cut(s) 218, 837
EcoRII CCWGG 3 cut(s) 368, 763, 871
EcoRV GATATC 1 cut(s) 851
EcoT14I CCWWGG 3 cut(s) 43, 633, 896
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 3 cut(s) 43, 633, 896
FaeI CATG 3 cut(s) 70, 797, 900
FaqI GGGAC 2 cut(s) 424, 861
FatI CATG 3 cut(s) 66, 793, 896
FauI CCCGC 3 cut(s) 167, 400, 518
FblI GTMKAC 2 cut(s) 110, 123
FokI GGATG 5 cut(s) 420, 518, 524, 731, 787
FriOI GRGCYC 1 cut(s) 369
GlaI GCGC 4 cut(s) 171, 173, 194, 442
GsuI CTGGAG 2 cut(s) 115, 230
HaeIII GGCC 7 cut(s) 26, 93, 358, 367, 416, 601, 871
HapII CCGG 7 cut(s) 27, 261, 272, 335, 399, 437, 602
HgaI GACGC 1 cut(s) 432
HhaI GCGC 4 cut(s) 172, 174, 195, 443
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 3 cut(s) 70, 797, 900
Hin6I GCGC 4 cut(s) 170, 172, 193, 441
HinP1I GCGC 4 cut(s) 170, 172, 193, 441
HincII GTYRAC 2 cut(s) 111, 124
HindII GTYRAC 2 cut(s) 111, 124
HinfI GANTC 4 cut(s) 30, 284, 881, 964
HpaII CCGG 7 cut(s) 27, 261, 272, 335, 399, 437, 602
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 3 cut(s) 111, 118, 124
Hpy188I TCNGA 3 cut(s) 303, 751, 862
Hpy188III TCNNGA 7 cut(s) 34, 209, 220, 609, 677, 878, 977
Hpy8I GTNNAC 3 cut(s) 111, 118, 124
Hpy99I CGWCG 5 cut(s) 10, 115, 125, 242, 448
HpyAV CCTTC 2 cut(s) 563, 643
HpyCH4III ACNGT 5 cut(s) 115, 593, 683, 742, 813
HpyCH4IV ACGT 2 cut(s) 18, 120
HpyCH4V TGCA 3 cut(s) 70, 703, 793
HpyF3I CTNAG 4 cut(s) 798, 861, 920, 960
HpySE526I ACGT 2 cut(s) 18, 120
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 3 cut(s) 70, 797, 900
HspAI GCGC 4 cut(s) 170, 172, 193, 441
Kzo9I GATC 5 cut(s) 292, 611, 662, 673, 751
LmnI GCTCC 2 cut(s) 45, 255
Lsp1109I GCAGC 1 cut(s) 903
LweI GCATC 4 cut(s) 183, 442, 765, 838
MaeII ACGT 2 cut(s) 18, 120
MaeIII GTNAC 3 cut(s) 14, 683, 970
MalI GATC 5 cut(s) 294, 613, 664, 675, 753
MboI GATC 5 cut(s) 292, 611, 662, 673, 751
MboII GAAGA 9 cut(s) 62, 169, 235, 475, 478, 568, 571, 672, 722
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 4 cut(s) 252, 369, 620, 747
MluCI AATT 1 cut(s) 980
MslI CAYNNNNRTG 1 cut(s) 839
MspI CCGG 7 cut(s) 27, 261, 272, 335, 399, 437, 602
MspR9I CCNGG 6 cut(s) 261, 370, 438, 603, 765, 873
MvaI CCWGG 3 cut(s) 370, 765, 873
MvnI CGCG 6 cut(s) 35, 170, 172, 193, 380, 443
NciI CCSGG 3 cut(s) 261, 438, 603
NcoI CCATGG 1 cut(s) 896
NdeII GATC 5 cut(s) 292, 611, 662, 673, 751
NlaIII CATG 3 cut(s) 70, 797, 900
NlaIV GGNNCC 4 cut(s) 367, 619, 631, 877
NmeAIII GCCGAG 3 cut(s) 69, 117, 383
NmuCI GTSAC 2 cut(s) 14, 683
NruI TCGCGA 1 cut(s) 35
NspI RCATGY 2 cut(s) 70, 797
OliI CACNNNNGTG 1 cut(s) 839
PaeI GCATGC 1 cut(s) 797
PaeR7I CTCGAG 1 cut(s) 837
PauI GCGCGC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 4 cut(s) 30, 284, 881, 964
Psp6I CCWGG 3 cut(s) 368, 763, 871
PspGI CCWGG 3 cut(s) 368, 763, 871
PspN4I GGNNCC 4 cut(s) 367, 619, 631, 877
PspOMI GGGCCC 1 cut(s) 365
PspPI GGNCC 7 cut(s) 356, 365, 366, 415, 599, 761, 875
PspXI VCTCGAGB 1 cut(s) 837
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 292
PteI GCGCGC 1 cut(s) 170
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 3 cut(s) 62, 590, 902
RsaNI GTAC 3 cut(s) 61, 589, 901
RseI CAYNNNNRTG 1 cut(s) 839
SalI GTCGAC 2 cut(s) 109, 122
Sau3AI GATC 5 cut(s) 292, 611, 662, 673, 751
Sau96I GGNCC 7 cut(s) 356, 365, 366, 415, 599, 761, 875
ScaI AGTACT 1 cut(s) 62
ScrFI CCNGG 6 cut(s) 261, 370, 438, 603, 765, 873
SduI GDGCHC 4 cut(s) 252, 369, 620, 747
SetI ASST 9 cut(s) 21, 42, 77, 123, 129, 216, 258, 282, 959
SfaNI GCATC 4 cut(s) 183, 442, 765, 838
SfcI CTRYAG 1 cut(s) 738
SfiI GGCCNNNNNGGCC 1 cut(s) 364
Sfr274I CTCGAG 1 cut(s) 837
SinI GGWCC 2 cut(s) 761, 875
SlaI CTCGAG 1 cut(s) 837
SmiMI CAYNNNNRTG 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 837
SmoI CTYRAG 1 cut(s) 837
SphI GCATGC 1 cut(s) 797
Sse9I AATT 1 cut(s) 980
StyD4I CCNGG 6 cut(s) 259, 368, 436, 601, 763, 871
StyI CCWWGG 3 cut(s) 43, 633, 896
TaaI ACNGT 5 cut(s) 115, 593, 683, 742, 813
TaiI ACGT 2 cut(s) 21, 123
TaqI TCGA 6 cut(s) 110, 123, 240, 282, 676, 838
TasI AATT 1 cut(s) 980
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 4 cut(s) 30, 284, 881, 964
TscAI CASTG 5 cut(s) 19, 550, 598, 688, 747
TseFI GTSAC 2 cut(s) 14, 683
TseI GCWGC 1 cut(s) 916
Tsp45I GTSAC 2 cut(s) 14, 683
TspDTI ATGAA 2 cut(s) 164, 996
TspRI CASTG 5 cut(s) 19, 550, 598, 688, 747
VpaK11BI GGWCC 2 cut(s) 761, 875
XapI RAATTY 1 cut(s) 980
XceI RCATGY 2 cut(s) 70, 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 837
XmiI GTMKAC 2 cut(s) 110, 123
ZraI GACGTC 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.