Forkhead associated domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07220 |
| fragaria_vesca | FvH4_2g18540 |
| malus_domestica | MD05G1171600.v1.1 MD10G1159800.v1.1 |
| prunus_persica | Prupe.8G198900_v2.0.a1 |
| pyrus_communis | pycom05g15830 pycom10g13800 |
| rosa_chinensis | RchiOBHm_Chr6g0284101 |
| rosa_laevigata | RLG00000012769 |
| rosa_multiflora | Rmu_sc0003778.1_g000044 Rmu_sc0015649.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00184930 |
| rosa_rugosa | Rorug06G0160700.1 |
| rosa_samantha | Rh6BG274200 |
| rosa_wichuraiana | Rw6G023540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 303 |
| AccB1I | GGYRCC | 2 cut(s) | 568, 577 |
| AccI | GTMKAC | 1 cut(s) | 303 |
| AccII | CGCG | 5 cut(s) | 215, 340, 352, 373, 386 |
| AclWI | GGATC | 3 cut(s) | 149, 162, 480 |
| AcsI | RAATTY | 3 cut(s) | 23, 171, 354 |
| AcuI | CTGAAG | 2 cut(s) | 206, 464 |
| AcyI | GRCGYC | 2 cut(s) | 300, 376 |
| AfaI | GTAC | 2 cut(s) | 242, 1061 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 421, 565, 1061, 1125 |
| AgsI | TTSAA | 1 cut(s) | 177 |
| AjnI | CCWGG | 5 cut(s) | 267, 548, 824, 922, 1030 |
| AleI | CACNNNNGTG | 2 cut(s) | 197, 998 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 194, 226 |
| AluBI | AGCT | 3 cut(s) | 220, 460, 797 |
| AluI | AGCT | 3 cut(s) | 220, 460, 797 |
| Alw21I | GWGCWC | 2 cut(s) | 432, 906 |
| Alw26I | GTCTC | 4 cut(s) | 30, 52, 831, 1159 |
| AlwI | GGATC | 3 cut(s) | 149, 162, 480 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 984 |
| Ama87I | CYCGRG | 3 cut(s) | 389, 440, 996 |
| AoxI | GGCC | 5 cut(s) | 271, 592, 632, 1028, 1123 |
| ApaI | GGGCCC | 1 cut(s) | 596 |
| ApeKI | GCWGC | 4 cut(s) | 189, 411, 978, 1075 |
| ApoI | RAATTY | 3 cut(s) | 23, 171, 354 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1086, 1118 |
| AspLEI | GCGC | 3 cut(s) | 342, 352, 388 |
| AsuC2I | CCSGG | 4 cut(s) | 441, 442, 596, 1127 |
| AsuHPI | GGTGA | 1 cut(s) | 529 |
| AvaI | CYCGRG | 3 cut(s) | 389, 440, 996 |
| AvaII | GGWCC | 8 cut(s) | 107, 394, 536, 545, 822, 920, 1034, 1116 |
| BaeGI | GKGCMC | 1 cut(s) | 596 |
| BamHI | GGATCC | 1 cut(s) | 154 |
| BanI | GGYRCC | 2 cut(s) | 568, 577 |
| BanII | GRGCYC | 2 cut(s) | 587, 596 |
| BauI | CACGAG | 1 cut(s) | 416 |
| BbsI | GAAGAC | 1 cut(s) | 237 |
| Bbv12I | GWGCWC | 2 cut(s) | 432, 906 |
| BbvI | GCAGC | 4 cut(s) | 201, 398, 990, 1062 |
| BccI | CCATC | 1 cut(s) | 809 |
| BceAI | ACGGC | 2 cut(s) | 424, 1078 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 977, 1011 |
| BciT130I | CCWGG | 5 cut(s) | 269, 550, 826, 924, 1032 |
| BcnI | CCSGG | 4 cut(s) | 441, 442, 596, 1127 |
| BcoDI | GTCTC | 4 cut(s) | 30, 52, 831, 1159 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 321, 591 |
| BisI | GCNGC | 8 cut(s) | 183, 190, 322, 325, 374, 412, 979, 1076 |
| BlsI | GCNGC | 8 cut(s) | 184, 191, 323, 326, 375, 413, 980, 1077 |
| BmcAI | AGTACT | 1 cut(s) | 242 |
| Bme1390I | CCNGG | 9 cut(s) | 269, 441, 442, 550, 596, 826, 924, 1032, 1127 |
| Bme18I | GGWCC | 8 cut(s) | 107, 394, 536, 545, 822, 920, 1034, 1116 |
| BmeT110I | CYCGRG | 3 cut(s) | 389, 440, 996 |
| BmiI | GGNNCC | 7 cut(s) | 156, 446, 546, 547, 570, 579, 594 |
| BmrFI | CCNGG | 9 cut(s) | 269, 441, 442, 550, 596, 826, 924, 1032, 1127 |
| BmsI | GCATC | 3 cut(s) | 924, 990, 997 |
| BpiI | GAAGAC | 1 cut(s) | 237 |
| BpmI | CTGGAG | 3 cut(s) | 295, 813, 1157 |
| BpuMI | CCSGG | 4 cut(s) | 441, 442, 596, 1127 |
| BsaHI | GRCGYC | 2 cut(s) | 300, 376 |
| BsaI | GGTCTC | 1 cut(s) | 52 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 421, 565, 1061, 1125 |
| Bse118I | RCCGGY | 2 cut(s) | 451, 514 |
| Bse1I | ACTGG | 2 cut(s) | 572, 1140 |
| BseBI | CCWGG | 5 cut(s) | 269, 550, 826, 924, 1032 |
| BseGI | GGATG | 3 cut(s) | 700, 883, 939 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 421, 565, 1061, 1125 |
| BseMII | CTCAG | 1 cut(s) | 1011 |
| BseNI | ACTGG | 2 cut(s) | 572, 1140 |
| BseRI | GAGGAG | 6 cut(s) | 535, 686, 689, 704, 745, 1018 |
| BseSI | GKGCMC | 1 cut(s) | 596 |
| BseXI | GCAGC | 4 cut(s) | 201, 398, 990, 1062 |
| BseYI | CCCAGC | 1 cut(s) | 629 |
| Bsh1236I | CGCG | 5 cut(s) | 215, 340, 352, 373, 386 |
| BshFI | GGCC | 5 cut(s) | 273, 594, 634, 1030, 1125 |
| BshNI | GGYRCC | 2 cut(s) | 568, 577 |
| BsiHKAI | GWGCWC | 2 cut(s) | 432, 906 |
| BsiHKCI | CYCGRG | 3 cut(s) | 389, 440, 996 |
| BsiSI | CCGG | 6 cut(s) | 274, 441, 452, 515, 596, 1126 |
| BslFI | GGGAC | 2 cut(s) | 531, 674 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 421, 565, 1061, 1125 |
| BsmAI | GTCTC | 4 cut(s) | 30, 52, 831, 1159 |
| BsmBI | CGTCTC | 2 cut(s) | 30, 1159 |
| BsmFI | GGGAC | 2 cut(s) | 531, 674 |
| BsmI | GAATGC | 1 cut(s) | 525 |
| BsnI | GGCC | 5 cut(s) | 273, 594, 634, 1030, 1125 |
| Bso31I | GGTCTC | 1 cut(s) | 52 |
| BsoBI | CYCGRG | 3 cut(s) | 389, 440, 996 |
| Bsp120I | GGGCCC | 1 cut(s) | 592 |
| Bsp1286I | GDGCHC | 4 cut(s) | 432, 587, 596, 906 |
| Bsp143I | GATC | 5 cut(s) | 154, 472, 483, 832, 910 |
| Bsp19I | CCATGG | 1 cut(s) | 1055 |
| Bsp68I | TCGCGA | 1 cut(s) | 215 |
| BspANI | GGCC | 5 cut(s) | 273, 594, 634, 1030, 1125 |
| BspCNI | CTCAG | 1 cut(s) | 1012 |
| BspFNI | CGCG | 5 cut(s) | 215, 340, 352, 373, 386 |
| BspLI | GGNNCC | 7 cut(s) | 156, 446, 546, 547, 570, 579, 594 |
| BspPI | GGATC | 3 cut(s) | 149, 162, 480 |
| BspQI | GCTCTTC | 1 cut(s) | 42 |
| BspT107I | GGYRCC | 2 cut(s) | 568, 577 |
| BspTNI | GGTCTC | 1 cut(s) | 52 |
| BsrFI | RCCGGY | 2 cut(s) | 451, 514 |
| BsrI | ACTGG | 2 cut(s) | 572, 1140 |
| BssAI | RCCGGY | 2 cut(s) | 451, 514 |
| BssMI | GATC | 5 cut(s) | 154, 472, 483, 832, 910 |
| BssNI | GRCGYC | 2 cut(s) | 300, 376 |
| BssSI | CACGAG | 1 cut(s) | 416 |
| BssT1I | CCWWGG | 3 cut(s) | 62, 1055, 1119 |
| Bst2BI | CACGAG | 1 cut(s) | 416 |
| Bst2UI | CCWGG | 5 cut(s) | 269, 550, 826, 924, 1032 |
| Bst4CI | ACNGT | 3 cut(s) | 20, 295, 901 |
| Bst6I | CTCTTC | 1 cut(s) | 42 |
| BstACI | GRCGYC | 2 cut(s) | 300, 376 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 859 |
| BstC8I | GCNNGC | 3 cut(s) | 82, 187, 1067 |
| BstDEI | CTNAG | 2 cut(s) | 1020, 1079 |
| BstDSI | CCRYGG | 2 cut(s) | 588, 1055 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 419 |
| BstF5I | GGATG | 3 cut(s) | 700, 883, 939 |
| BstFNI | CGCG | 5 cut(s) | 215, 340, 352, 373, 386 |
| BstHHI | GCGC | 3 cut(s) | 342, 352, 388 |
| BstKTI | GATC | 5 cut(s) | 157, 475, 486, 835, 913 |
| BstMAI | GTCTC | 4 cut(s) | 30, 52, 831, 1159 |
| BstMBI | GATC | 5 cut(s) | 154, 472, 483, 832, 910 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 212, 321, 408, 457, 466, 577, 591, 859, 1075 |
| BstNI | CCWGG | 5 cut(s) | 269, 550, 826, 924, 1032 |
| BstNSI | RCATGY | 1 cut(s) | 250 |
| BstSCI | CCNGG | 9 cut(s) | 267, 439, 440, 548, 594, 824, 922, 1030, 1125 |
| BstSLI | GKGCMC | 1 cut(s) | 596 |
| BstUI | CGCG | 5 cut(s) | 215, 340, 352, 373, 386 |
| BstV1I | GCAGC | 4 cut(s) | 201, 398, 990, 1062 |
| BstV2I | GAAGAC | 1 cut(s) | 237 |
| BstX2I | RGATCY | 2 cut(s) | 154, 472 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 268, 930 |
| BstYI | RGATCY | 2 cut(s) | 154, 472 |
| BsuRI | GGCC | 5 cut(s) | 273, 594, 634, 1030, 1125 |
| BtgI | CCRYGG | 2 cut(s) | 588, 1055 |
| BtsCI | GGATG | 3 cut(s) | 700, 883, 939 |
| BtsI | GCAGTG | 2 cut(s) | 715, 721 |
| BtsIMutI | CAGTG | 7 cut(s) | 25, 192, 579, 715, 721, 840, 1133 |
| BtuMI | TCGCGA | 1 cut(s) | 215 |
| Cac8I | GCNNGC | 3 cut(s) | 82, 187, 1067 |
| CaiI | CAGNNNCTG | 1 cut(s) | 984 |
| CfoI | GCGC | 3 cut(s) | 342, 352, 388 |
| Cfr10I | RCCGGY | 2 cut(s) | 451, 514 |
| Cfr9I | CCCGGG | 1 cut(s) | 440 |
| CseI | GACGC | 1 cut(s) | 365 |
| Csp6I | GTAC | 2 cut(s) | 241, 1060 |
| CviAII | CATG | 4 cut(s) | 247, 328, 347, 1056 |
| CviQI | GTAC | 2 cut(s) | 241, 1060 |
| DdeI | CTNAG | 2 cut(s) | 1020, 1079 |
| DpnI | GATC | 5 cut(s) | 156, 474, 485, 834, 912 |
| DpnII | GATC | 5 cut(s) | 154, 472, 483, 832, 910 |
| Eam1104I | CTCTTC | 1 cut(s) | 42 |
| EarI | CTCTTC | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 3 cut(s) | 62, 1055, 1119 |
| Eco24I | GRGCYC | 2 cut(s) | 587, 596 |
| Eco31I | GGTCTC | 1 cut(s) | 52 |
| Eco47I | GGWCC | 8 cut(s) | 107, 394, 536, 545, 822, 920, 1034, 1116 |
| Eco57I | CTGAAG | 2 cut(s) | 206, 464 |
| Eco88I | CYCGRG | 3 cut(s) | 389, 440, 996 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 419 |
| EcoO109I | RGGNCCY | 2 cut(s) | 394, 545 |
| EcoRII | CCWGG | 5 cut(s) | 267, 548, 824, 922, 1030 |
| EcoT14I | CCWWGG | 3 cut(s) | 62, 1055, 1119 |
| EcoT38I | GRGCYC | 2 cut(s) | 587, 596 |
| ErhI | CCWWGG | 3 cut(s) | 62, 1055, 1119 |
| Esp3I | CGTCTC | 2 cut(s) | 30, 1159 |
| FaeI | CATG | 4 cut(s) | 250, 331, 350, 1059 |
| FaqI | GGGAC | 2 cut(s) | 531, 674 |
| FatI | CATG | 4 cut(s) | 246, 327, 346, 1055 |
| FauI | CCCGC | 5 cut(s) | 178, 199, 456, 568, 758 |
| FblI | GTMKAC | 1 cut(s) | 303 |
| Fnu4HI | GCNGC | 8 cut(s) | 183, 190, 322, 325, 374, 412, 979, 1076 |
| FokI | GGATG | 3 cut(s) | 707, 890, 946 |
| FriOI | GRGCYC | 2 cut(s) | 587, 596 |
| Fsp4HI | GCNGC | 8 cut(s) | 183, 190, 322, 325, 374, 412, 979, 1076 |
| GlaI | GCGC | 3 cut(s) | 341, 351, 387 |
| GluI | GCNGC | 8 cut(s) | 183, 190, 322, 325, 374, 412, 979, 1076 |
| GsaI | CCCAGC | 1 cut(s) | 633 |
| GsuI | CTGGAG | 3 cut(s) | 295, 813, 1157 |
| HaeIII | GGCC | 5 cut(s) | 273, 594, 634, 1030, 1125 |
| HapII | CCGG | 6 cut(s) | 274, 441, 452, 515, 596, 1126 |
| HgaI | GACGC | 1 cut(s) | 365 |
| HhaI | GCGC | 3 cut(s) | 342, 352, 388 |
| Hin1I | GRCGYC | 2 cut(s) | 300, 376 |
| Hin1II | CATG | 4 cut(s) | 250, 331, 350, 1059 |
| Hin6I | GCGC | 3 cut(s) | 340, 350, 386 |
| HinP1I | GCGC | 3 cut(s) | 340, 350, 386 |
| HincII | GTYRAC | 1 cut(s) | 304 |
| HindII | GTYRAC | 1 cut(s) | 304 |
| HindIII | AAGCTT | 1 cut(s) | 218 |
| HinfI | GANTC | 3 cut(s) | 381, 464, 1040 |
| HpaII | CCGG | 6 cut(s) | 274, 441, 452, 515, 596, 1126 |
| HphI | GGTGA | 1 cut(s) | 529 |
| Hpy166II | GTNNAC | 2 cut(s) | 298, 304 |
| Hpy188I | TCNGA | 5 cut(s) | 154, 483, 488, 910, 1021 |
| Hpy188III | TCNNGA | 3 cut(s) | 214, 836, 1037 |
| Hpy8I | GTNNAC | 2 cut(s) | 298, 304 |
| Hpy99I | CGWCG | 4 cut(s) | 57, 295, 305, 381 |
| HpyAV | CCTTC | 3 cut(s) | 640, 731, 813 |
| HpyCH4III | ACNGT | 3 cut(s) | 20, 295, 901 |
| HpyCH4IV | ACGT | 1 cut(s) | 300 |
| HpyCH4V | TGCA | 2 cut(s) | 250, 862 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 212, 321, 408, 457, 466, 577, 591, 859, 1075 |
| HpyF3I | CTNAG | 2 cut(s) | 1020, 1079 |
| HpySE526I | ACGT | 1 cut(s) | 300 |
| Hsp92I | GRCGYC | 2 cut(s) | 300, 376 |
| Hsp92II | CATG | 4 cut(s) | 250, 331, 350, 1059 |
| HspAI | GCGC | 3 cut(s) | 340, 350, 386 |
| KflI | GGGWCCC | 1 cut(s) | 545 |
| Kzo9I | GATC | 5 cut(s) | 154, 472, 483, 832, 910 |
| LguI | GCTCTTC | 1 cut(s) | 42 |
| LmnI | GCTCC | 5 cut(s) | 88, 435, 522, 794, 967 |
| Lsp1109I | GCAGC | 4 cut(s) | 201, 398, 990, 1062 |
| LweI | GCATC | 3 cut(s) | 924, 990, 997 |
| MaeII | ACGT | 1 cut(s) | 300 |
| MaeIII | GTNAC | 2 cut(s) | 29, 1129 |
| MalI | GATC | 5 cut(s) | 156, 474, 485, 834, 912 |
| MboI | GATC | 5 cut(s) | 154, 472, 483, 832, 910 |
| MboII | GAAGA | 9 cut(s) | 59, 139, 242, 467, 470, 655, 733, 736, 817 |
| MfeI | CAATTG | 1 cut(s) | 117 |
| MflI | RGATCY | 2 cut(s) | 154, 472 |
| MhlI | GDGCHC | 4 cut(s) | 432, 587, 596, 906 |
| MluCI | AATT | 7 cut(s) | 13, 23, 98, 117, 133, 171, 354 |
| MlyI | GAGTC | 2 cut(s) | 458, 1049 |
| MslI | CAYNNNNRTG | 2 cut(s) | 197, 998 |
| MspI | CCGG | 6 cut(s) | 274, 441, 452, 515, 596, 1126 |
| MspR9I | CCNGG | 9 cut(s) | 269, 441, 442, 550, 596, 826, 924, 1032, 1127 |
| MunI | CAATTG | 1 cut(s) | 117 |
| Mva1269I | GAATGC | 1 cut(s) | 525 |
| MvaI | CCWGG | 5 cut(s) | 269, 550, 826, 924, 1032 |
| MvnI | CGCG | 5 cut(s) | 215, 340, 352, 373, 386 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 212, 321, 408, 457, 466, 577, 591, 859, 1075 |
| NciI | CCSGG | 4 cut(s) | 441, 442, 596, 1127 |
| NcoI | CCATGG | 1 cut(s) | 1055 |
| NdeII | GATC | 5 cut(s) | 154, 472, 483, 832, 910 |
| NlaIII | CATG | 4 cut(s) | 250, 331, 350, 1059 |
| NlaIV | GGNNCC | 7 cut(s) | 156, 446, 546, 547, 570, 579, 594 |
| NmeAIII | GCCGAG | 3 cut(s) | 297, 378, 606 |
| NmuCI | GTSAC | 1 cut(s) | 29 |
| NruI | TCGCGA | 1 cut(s) | 215 |
| NspI | RCATGY | 1 cut(s) | 250 |
| OliI | CACNNNNGTG | 2 cut(s) | 197, 998 |
| PaeR7I | CTCGAG | 2 cut(s) | 389, 996 |
| PciSI | GCTCTTC | 1 cut(s) | 42 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 414 |
| PctI | GAATGC | 1 cut(s) | 525 |
| PfeI | GAWTC | 1 cut(s) | 381 |
| PfoI | TCCNGGA | 1 cut(s) | 922 |
| PkrI | GCNGC | 8 cut(s) | 184, 191, 323, 326, 375, 413, 980, 1077 |
| PleI | GAGTC | 2 cut(s) | 458, 1048 |
| PpsI | GAGTC | 2 cut(s) | 458, 1048 |
| PpuMI | RGGWCCY | 2 cut(s) | 394, 545 |
| Psp5II | RGGWCCY | 2 cut(s) | 394, 545 |
| Psp6I | CCWGG | 5 cut(s) | 267, 548, 824, 922, 1030 |
| PspFI | CCCAGC | 1 cut(s) | 629 |
| PspGI | CCWGG | 5 cut(s) | 267, 548, 824, 922, 1030 |
| PspN4I | GGNNCC | 7 cut(s) | 156, 446, 546, 547, 570, 579, 594 |
| PspOMI | GGGCCC | 1 cut(s) | 592 |
| PspPPI | RGGWCCY | 2 cut(s) | 394, 545 |
| PspXI | VCTCGAGB | 2 cut(s) | 389, 996 |
| PstNI | CAGNNNCTG | 1 cut(s) | 984 |
| PsuI | RGATCY | 2 cut(s) | 154, 472 |
| RruI | TCGCGA | 1 cut(s) | 215 |
| RsaI | GTAC | 2 cut(s) | 242, 1061 |
| RsaNI | GTAC | 2 cut(s) | 241, 1060 |
| RseI | CAYNNNNRTG | 2 cut(s) | 197, 998 |
| SalI | GTCGAC | 1 cut(s) | 302 |
| SapI | GCTCTTC | 1 cut(s) | 42 |
| SatI | GCNGC | 8 cut(s) | 183, 190, 322, 325, 374, 412, 979, 1076 |
| Sau3AI | GATC | 5 cut(s) | 154, 472, 483, 832, 910 |
| ScaI | AGTACT | 1 cut(s) | 242 |
| SchI | GAGTC | 2 cut(s) | 458, 1049 |
| ScrFI | CCNGG | 9 cut(s) | 269, 441, 442, 550, 596, 826, 924, 1032, 1127 |
| SduI | GDGCHC | 4 cut(s) | 432, 587, 596, 906 |
| SfaNI | GCATC | 3 cut(s) | 924, 990, 997 |
| Sfr274I | CTCGAG | 2 cut(s) | 389, 996 |
| SinI | GGWCC | 8 cut(s) | 107, 394, 536, 545, 822, 920, 1034, 1116 |
| SlaI | CTCGAG | 2 cut(s) | 389, 996 |
| SmaI | CCCGGG | 1 cut(s) | 442 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 197, 998 |
| SmlI | CTYRAG | 2 cut(s) | 389, 996 |
| SmoI | CTYRAG | 2 cut(s) | 389, 996 |
| Sse9I | AATT | 7 cut(s) | 13, 23, 98, 117, 133, 171, 354 |
| StyD4I | CCNGG | 9 cut(s) | 267, 439, 440, 548, 594, 824, 922, 1030, 1125 |
| StyI | CCWWGG | 3 cut(s) | 62, 1055, 1119 |
| TaaI | ACNGT | 3 cut(s) | 20, 295, 901 |
| TaiI | ACGT | 1 cut(s) | 303 |
| TaqI | TCGA | 7 cut(s) | 237, 290, 303, 379, 390, 835, 997 |
| TaqII | GACCGA | 1 cut(s) | 124 |
| TasI | AATT | 7 cut(s) | 13, 23, 98, 117, 133, 171, 354 |
| TatI | WGTACW | 1 cut(s) | 240 |
| TauI | GCSGC | 4 cut(s) | 185, 324, 327, 376 |
| TfiI | GAWTC | 1 cut(s) | 381 |
| TscAI | CASTG | 7 cut(s) | 25, 199, 579, 715, 721, 847, 1140 |
| TseFI | GTSAC | 1 cut(s) | 29 |
| TseI | GCWGC | 4 cut(s) | 189, 411, 978, 1075 |
| Tsp45I | GTSAC | 1 cut(s) | 29 |
| TspDTI | ATGAA | 3 cut(s) | 344, 941, 1155 |
| TspGWI | ACGGA | 1 cut(s) | 70 |
| TspMI | CCCGGG | 1 cut(s) | 440 |
| TspRI | CASTG | 7 cut(s) | 25, 199, 579, 715, 721, 847, 1140 |
| VpaK11BI | GGWCC | 8 cut(s) | 107, 394, 536, 545, 822, 920, 1034, 1116 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 419 |
| XapI | RAATTY | 3 cut(s) | 23, 171, 354 |
| XceI | RCATGY | 1 cut(s) | 250 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 123 |
| XhoI | CTCGAG | 2 cut(s) | 389, 996 |
| XmaI | CCCGGG | 1 cut(s) | 440 |
| XmiI | GTMKAC | 1 cut(s) | 303 |
| ZraI | GACGTC | 1 cut(s) | 301 |
| ZrmI | AGTACT | 1 cut(s) | 242 |