FvH4_2g19780

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010377
Physical Location & Seq
Forward (+)
16721984 .. 16724634
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19780.t1

Sequence Viewer

Length: 441 bp
ATGGGTCCTCAAGTGTGCCAAGTCTGCAACGAAGCTCAATCCAAGTACAAGTGCCCCTCTTGCCGAGCACCTTATTGTTCTGTGCCCTGTTTCAAGAAGCACAAAGAAACCCCGTGCGTCTCGCTCCTGCATTCAGAGGACAACCCAAAGAGCACATGTGTTTTGCCAGTGCAATCTGAGGAAAAACCAAGTGCTGCCCCAGAATCAGTGGTAGAAAGGCCAGTAACTGTTACTGAACCAAGTGCCGTGCTGAAAAGGGAGCAGTTGGAGGCTATAGCTTCTTCCAGTGAACTTCGTGATGCTTTAAAAGATGAAAGTCTTCAGAAGCTCATTGAGAGTATAGATTGTTCTCCAGATGCAGAGAATGAACTTGATAAAGCTATGGATGTGGAGGTGTTTCGGTTATTTACTGACAAGATTCTATCTACCATCAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-HIT

Protein Analysis

147

Amino Acids

16.11

Weight (kDa)

4.91

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 4 - 32 4.1e-11 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820
fragaria_vesca FvH4_2g19780
malus_domestica MD05G1182200.v1.1 MD10G1170500.v1.1
prunus_persica Prupe.8G209000_v2.0.a1
pyrus_communis pycom05g16760
rosa_chinensis RchiOBHm_Chr6g0285481
rosa_laevigata RLG00000012636
rosa_multiflora Rmu_sc0000284.1_g000002
rosa_roxburghii Rroxscaffold_7G00183110
rosa_rugosa Rorug06G0174800
rosa_samantha Rh6AG286400 Rh6BG287600 Rh6CG288700 Rh6DG281500
rosa_wichuraiana Rw6G024600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 155
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 4 cut(s) 35, 278, 328, 380
AluI AGCT 4 cut(s) 35, 278, 328, 380
Alw21I GWGCWC 2 cut(s) 70, 155
Alw26I GTCTC 1 cut(s) 124
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 2 cut(s) 56, 87
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 70, 155
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 289, 346
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 336
Bse1I ACTGG 3 cut(s) 167, 221, 285
BseGI GGATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 3 cut(s) 167, 221, 285
BseSI GKGCMC 2 cut(s) 56, 87
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 70, 155
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 1 cut(s) 220
Bsp1286I GDGCHC 4 cut(s) 56, 70, 87, 155
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 3 cut(s) 167, 221, 285
Bst4CI ACNGT 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 24, 60
BstNSI RCATGY 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 2 cut(s) 56, 87
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 311
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 3 cut(s) 174, 213, 292
CaiI CAGNNNCTG 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 156
CviJI RGCY 6 cut(s) 35, 220, 272, 278, 328, 380
CviKI_1 RGCY 6 cut(s) 35, 220, 272, 278, 328, 380
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 177
DraI TTTAAA 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 5
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 159
FaiI YATR 5 cut(s) 157, 275, 341, 383, 439
FatI CATG 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 220
HgaI GACGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 159
HinfI GANTC 2 cut(s) 203, 418
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 3 cut(s) 136, 178, 324
Hpy188III TCNNGA 3 cut(s) 94, 296, 353
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 27, 130, 172, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 60
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 159
LmnI GCTCC 2 cut(s) 129, 259
LpnPI CCDG 7 cut(s) 100, 140, 180, 213, 234, 298, 366
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 2 cut(s) 289, 346
MaeIII GTNAC 2 cut(s) 223, 229
MboII GAAGA 2 cut(s) 273, 311
MhlI GDGCHC 4 cut(s) 56, 70, 87, 155
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 18, 67, 130, 172, 262, 385
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 24, 60
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 89
NspI RCATGY 1 cut(s) 159
PciI ACATGT 1 cut(s) 155
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 2 cut(s) 203, 418
PkrI GCNGC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 5
PscI ACATGT 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsrI GAACNNNNNNTAC 2 cut(s) 331, 363
PstNI CAGNNNCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 5
SduI GDGCHC 4 cut(s) 56, 70, 87, 155
SetI ASST 6 cut(s) 37, 73, 280, 330, 382, 396
SfaNI GCATC 2 cut(s) 289, 346
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 229
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 2 cut(s) 203, 418
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 3 cut(s) 174, 213, 292
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 327, 381
TspRI CASTG 3 cut(s) 174, 213, 292
VpaK11BI GGWCC 1 cut(s) 5
XceI RCATGY 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.