Prupe.8G209000_v2.0.a1

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010377
Physical Location & Seq
Forward (+)
19422852 .. 19425574
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G209000.1

Sequence Viewer

Length: 402 bp
ATGGGTCCTCGACTGTGCCAAGTCTGCAACGAAGCACAATCCAAGTACAAGTGCCCTTCATGCCTTGCGCCTTATTGTTCTGTAGCCTGTTTCAAGAAACACAAGGAAAACCCATGTGCTTTGCCAGTGTCTTCCTTGGAAAATTCACCAACCACAGGTCCGGAATCACGGGTAGATAGGCCATTAACTGTTGAGGAACCGAGTGAAGTGCTGCAAAGGCTGCAACTAGAGGCTGTAGCTTCTTCCAGTGAAATTTGCAGTGCTTTGAAAGATGAAAACCTTCAGAAGCTCATTCTAAATATAGATTGTTCACCAGATGCAGAGAAAGAACTTGAGAAAGCTATGGGTGTGGATGTGTTTCGGATATTTACGGACAAGATCCTGTCTACCCTTGGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-HIT

Protein Analysis

134

Amino Acids

14.56

Weight (kDa)

5.06

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820
fragaria_vesca FvH4_2g19780
malus_domestica MD05G1182200.v1.1 MD10G1170500.v1.1
prunus_persica Prupe.8G209000_v2.0.a1
pyrus_communis pycom05g16760
rosa_chinensis RchiOBHm_Chr6g0285481
rosa_laevigata RLG00000012636
rosa_multiflora Rmu_sc0000284.1_g000002
rosa_roxburghii Rroxscaffold_7G00183110
rosa_rugosa Rorug06G0174800
rosa_samantha Rh6AG286400 Rh6BG287600 Rh6CG288700 Rh6DG281500
rosa_wichuraiana Rw6G024600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 160
AclWI GGATC 1 cut(s) 373
AcsI RAATTY 2 cut(s) 142, 252
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 94, 268
AluBI AGCT 3 cut(s) 239, 289, 341
AluI AGCT 3 cut(s) 239, 289, 341
AlwI GGATC 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 211, 220
ApoI RAATTY 2 cut(s) 142, 252
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 5, 158
AsuHPI GGTGA 2 cut(s) 138, 303
AvaII GGWCC 2 cut(s) 5, 158
BaeGI GKGCMC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 198, 207
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 2 cut(s) 81, 234
BisI GCNGC 2 cut(s) 212, 221
BlsI GCNGC 2 cut(s) 213, 222
Bme18I GGWCC 2 cut(s) 5, 158
BmgT120I GGNCC 2 cut(s) 5, 158
BmiI GGNNCC 2 cut(s) 6, 198
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 135, 391
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 2 cut(s) 125, 246
BseAI TCCGGA 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 135, 391
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 155
BseNI ACTGG 2 cut(s) 125, 246
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 2 cut(s) 198, 207
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 155
BsnI GGCC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 1 cut(s) 378
BspANI GGCC 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 6, 198
BspPI GGATC 1 cut(s) 373
BsrI ACTGG 2 cut(s) 125, 246
BssECI CCNNGG 2 cut(s) 135, 391
BssMI GATC 1 cut(s) 378
BssT1I CCWWGG 2 cut(s) 135, 391
Bst4CI ACNGT 2 cut(s) 15, 190
BstAPI GCANNNNNTGC 1 cut(s) 220
BstF5I GGATG 1 cut(s) 358
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 381
BstMBI GATC 1 cut(s) 378
BstMWI GCNNNNNNNGC 4 cut(s) 24, 60, 217, 220
BstSFI CTRYAG 2 cut(s) 81, 234
BstSLI GKGCMC 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 198, 207
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 3 cut(s) 132, 253, 265
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 5, 158
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 60, 114
CviJI RGCY 8 cut(s) 86, 181, 220, 233, 239, 289, 341, 396
CviKI_1 RGCY 8 cut(s) 86, 181, 220, 233, 239, 289, 341, 396
CviQI GTAC 1 cut(s) 46
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
Eco130I CCWWGG 2 cut(s) 135, 391
Eco47I GGWCC 2 cut(s) 5, 158
Eco57I CTGAAG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 5
EcoT14I CCWWGG 2 cut(s) 135, 391
ErhI CCWWGG 2 cut(s) 135, 391
FaeI CATG 2 cut(s) 63, 117
FaiI YATR 5 cut(s) 61, 115, 302, 344, 400
FatI CATG 2 cut(s) 59, 113
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 2 cut(s) 212, 221
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 2 cut(s) 212, 221
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 212, 221
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 161
HhaI GCGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 63, 117
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 138, 303
Hpy166II GTNNAC 2 cut(s) 311, 387
Hpy188I TCNGA 2 cut(s) 285, 363
Hpy188III TCNNGA 2 cut(s) 94, 161
Hpy8I GTNNAC 2 cut(s) 311, 387
HpyAV CCTTC 2 cut(s) 66, 290
HpyCH4III ACNGT 2 cut(s) 15, 190
HpyCH4V TGCA 5 cut(s) 27, 214, 223, 258, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 60, 217, 220
Hsp92II CATG 2 cut(s) 63, 117
HspAI GCGC 1 cut(s) 68
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 378
LpnPI CCDG 7 cut(s) 100, 138, 141, 174, 259, 327, 395
Lsp1109I GCAGC 2 cut(s) 198, 207
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 227
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MboII GAAGA 2 cut(s) 123, 234
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 142, 252
MnlI CCTC 3 cut(s) 18, 187, 223
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 1 cut(s) 185
MspI CCGG 1 cut(s) 161
MwoI GCNNNNNNNGC 4 cut(s) 24, 60, 217, 220
NdeII GATC 1 cut(s) 378
NlaIII CATG 2 cut(s) 63, 117
NlaIV GGNNCC 2 cut(s) 6, 198
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 213, 222
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 6, 198
PspPI GGNCC 2 cut(s) 5, 158
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 1 cut(s) 378
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 212, 221
Sau3AI GATC 1 cut(s) 378
Sau96I GGNCC 2 cut(s) 5, 158
SduI GDGCHC 1 cut(s) 56
SetI ASST 5 cut(s) 160, 241, 282, 291, 343
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 81, 234
SinI GGWCC 2 cut(s) 5, 158
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 142, 252
SspMI CTAG 1 cut(s) 227
StyI CCWWGG 2 cut(s) 135, 391
TaaI ACNGT 2 cut(s) 15, 190
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 142, 252
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 3 cut(s) 132, 253, 265
TseI GCWGC 2 cut(s) 211, 220
TspDTI ATGAA 2 cut(s) 48, 288
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 3 cut(s) 132, 253, 265
VpaK11BI GGWCC 2 cut(s) 5, 158
XapI RAATTY 2 cut(s) 142, 252
XmiI GTMKAC 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.