Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000284.1

Orthogroup ID

OG0010377

Physical Location & Seq

Genomic Coordinates Reverse (-)

8129 .. 10931

Gene Structure 2803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000284.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgggtcctcgactgtgccaagtctgcaacgaagctcaatccaagtacaagtgtccctcatgccgtgcaccttattgttctgttccctgtttcaaaaaacacaaagaaaccccatgcgttttgccagaggagaaaccagaaagcgcatctgttttgccagtgccatctgaggaaaaaccaactgctgctccagaatcagtggtcgaaaggccaataactgttcctgaaccaagtgccgtgctggaaaggcagcaactagaggctatagcgtcttccagtgaaatttgcgatgctttgaaagatgaaagtcttcaaagactcattgagagtatagattgttccccagatgcagagaatgaacttgataaagctatggatgtggagatgtttcgaatatttactgacaagatcctatctaccatcaacccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-HIT

Protein Analysis

143

Amino Acids

15.81

Weight (kDa)

4.68

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820
fragaria_vesca	FvH4_2g19780
malus_domestica	MD05G1182200.v1.1 MD10G1170500.v1.1
prunus_persica	Prupe.8G209000_v2.0.a1
pyrus_communis	pycom05g16760
rosa_chinensis	RchiOBHm_Chr6g0285481
rosa_laevigata	RLG00000012636
rosa_multiflora	Rmu_sc0000284.1_g000002
rosa_roxburghii	Rroxscaffold_7G00183110
rosa_rugosa	Rorug06G0174800
rosa_samantha	Rh6AG286400 Rh6BG287600 Rh6CG288700 Rh6DG281500
rosa_wichuraiana	Rw6G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	282
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	94, 298, 314
AluBI	AGCT	2 cut(s)	35, 371
AluI	AGCT	2 cut(s)	35, 371
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	209
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	185, 250
ApoI	RAATTY	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	5
AsuII	TTCGAA	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	70
BbsI	GAAGAC	2 cut(s)	264, 302
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	172, 262
BccI	CCATC	2 cut(s)	172, 428
BceAI	ACGGC	2 cut(s)	48, 221
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	2 cut(s)	186, 251
BlsI	GCNGC	2 cut(s)	187, 252
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	155, 280, 337
BpiI	GAAGAC	2 cut(s)	264, 302
BpmI	CTGGAG	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bse1I	ACTGG	2 cut(s)	158, 276
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	158, 276
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	172, 262
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	408
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	403
BspT104I	TTCGAA	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	158, 276
BssMI	GATC	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	15, 220
BstBI	TTCGAA	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 247
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	172, 262
BstV2I	GAAGAC	2 cut(s)	264, 302
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	165, 204, 283
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	5
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	60, 114
CviJI	RGCY	4 cut(s)	35, 211, 263, 371
CviKI_1	RGCY	4 cut(s)	35, 211, 263, 371
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
FaeI	CATG	2 cut(s)	63, 117
FaiI	YATR	6 cut(s)	61, 115, 266, 332, 374, 430
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	59, 113
Fnu4HI	GCNGC	2 cut(s)	186, 251
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	2 cut(s)	186, 251
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	186, 251
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	63, 117
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	194, 318
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	191, 224
Hpy8I	GTNNAC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	15, 220
HpyCH4V	TGCA	3 cut(s)	27, 68, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 247
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	63, 117
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	9 cut(s)	100, 138, 150, 171, 204, 227, 237, 289, 357
Lsp1109I	GCAGC	2 cut(s)	172, 262
LweI	GCATC	3 cut(s)	155, 280, 337
MaeI	CTAG	1 cut(s)	257
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	2 cut(s)	264, 302
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	18, 67, 121, 163, 253
MroXI	GAANNNNTTC	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	24, 247
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	2 cut(s)	63, 117
NlaIV	GGNNCC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	187, 252
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SatI	GCNGC	2 cut(s)	186, 251
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	3 cut(s)	37, 73, 373
SfaNI	GCATC	3 cut(s)	155, 280, 337
SfcI	CTRYAG	1 cut(s)	264
SfuI	TTCGAA	1 cut(s)	391
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	1 cut(s)	282
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	15, 220
TaqI	TCGA	3 cut(s)	10, 204, 391
TasI	AATT	1 cut(s)	282
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	194
TscAI	CASTG	3 cut(s)	165, 204, 283
TseI	GCWGC	2 cut(s)	185, 250
TspDTI	ATGAA	2 cut(s)	318, 372
TspRI	CASTG	3 cut(s)	165, 204, 283
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.