Rh6CG288700

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010377
Physical Location & Seq
Forward (+)
46651652 .. 46658009
6358 bp
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UTR
Exon/CDS
Intron
Rh6CG288700.1

Sequence Viewer

Length: 438 bp
ATGGGTCCTCGACTGTGCCAAGTCTGCAACGAAGCTCAATCCAAGTACAAGTGTCCCTCATGCCGTGCACCTTATTGTTCTGTTCCCTGTTTCAAAAAACACAAAGAAACCCCATGCGTTTTGCCAGAGGAGAAACCAGAAAGCGCATCTGTTTTGCCAGTGCCATCTGAGGAAAAACCAACTGCTGCTCCAGAATCAGTGGTCGAAAGGCCAATAACTGTTACTGAAGCAAGTGCCGTGCTGGAAAGGCAGCAACTAGAGGCTATAGCTTCTTCCAGTGAAATTTGCGATGCTTTGAAAGATGAAAGTCTTCAAAGACTCATTGAGAGTATAGATTGTTCTCCAGATGCAGAGAATGAACTTGATAAAGCTATGGATGTGGAGATGTTTCGAATATTTACTGACAAGGTAATGCCCCATCTTCTTAAGCTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-HIT

Protein Analysis

145

Amino Acids

16.09

Weight (kDa)

4.85

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 4 - 32 3.7e-11 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820
fragaria_vesca FvH4_2g19780
malus_domestica MD05G1182200.v1.1 MD10G1170500.v1.1
prunus_persica Prupe.8G209000_v2.0.a1
pyrus_communis pycom05g16760
rosa_chinensis RchiOBHm_Chr6g0285481
rosa_laevigata RLG00000012636
rosa_multiflora Rmu_sc0000284.1_g000002
rosa_roxburghii Rroxscaffold_7G00183110
rosa_rugosa Rorug06G0174800
rosa_samantha Rh6AG286400 Rh6BG287600 Rh6CG288700 Rh6DG281500
rosa_wichuraiana Rw6G024600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 47
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 3 cut(s) 94, 298, 314
AluBI AGCT 4 cut(s) 35, 269, 371, 430
AluI AGCT 4 cut(s) 35, 269, 371, 430
Alw21I GWGCWC 1 cut(s) 70
Alw44I GTGCAC 1 cut(s) 66
AoxI GGCC 1 cut(s) 209
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 185, 250
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 5
AsuII TTCGAA 1 cut(s) 391
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 172, 262
BccI CCATC 2 cut(s) 172, 426
BceAI ACGGC 2 cut(s) 48, 221
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 425
BisI GCNGC 2 cut(s) 186, 251
BlsI GCNGC 2 cut(s) 187, 252
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 3 cut(s) 155, 280, 337
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 2 cut(s) 174, 327
Bpu14I TTCGAA 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bse1I ACTGG 2 cut(s) 158, 276
BseGI GGATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 158, 276
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 172, 262
BshFI GGCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 70
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 391
BspTI CTTAAG 1 cut(s) 425
BsrI ACTGG 2 cut(s) 158, 276
Bst4CI ACNGT 2 cut(s) 15, 220
BstAFI CTTAAG 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 24, 247
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 172, 262
BstV2I GAAGAC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 3 cut(s) 165, 204, 283
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 60, 114
CviJI RGCY 6 cut(s) 35, 211, 263, 269, 371, 430
CviKI_1 RGCY 6 cut(s) 35, 211, 263, 269, 371, 430
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 5
FaeI CATG 2 cut(s) 63, 117
FaiI YATR 5 cut(s) 61, 115, 266, 332, 374
FaqI GGGAC 1 cut(s) 39
FatI CATG 2 cut(s) 59, 113
Fnu4HI GCNGC 2 cut(s) 186, 251
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 186, 251
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 145
GluI GCNGC 2 cut(s) 186, 251
GsuI CTGGAG 2 cut(s) 174, 327
HaeIII GGCC 1 cut(s) 211
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 63, 117
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 2 cut(s) 194, 318
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 191, 344
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 15, 220
HpyCH4V TGCA 3 cut(s) 27, 68, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 247
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 2 cut(s) 63, 117
HspAI GCGC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 8 cut(s) 100, 138, 150, 171, 204, 227, 289, 357
Lsp1109I GCAGC 2 cut(s) 172, 262
LweI GCATC 3 cut(s) 155, 280, 337
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 3 cut(s) 264, 302, 413
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 282
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 5 cut(s) 18, 67, 121, 163, 253
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 1 cut(s) 426
MspCI CTTAAG 1 cut(s) 425
MwoI GCNNNNNNNGC 2 cut(s) 24, 247
NlaIII CATG 2 cut(s) 63, 117
NlaIV GGNNCC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 187, 252
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 186, 251
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 1 cut(s) 312
SduI GDGCHC 1 cut(s) 70
SetI ASST 6 cut(s) 37, 73, 271, 373, 411, 432
SfaNI GCATC 3 cut(s) 155, 280, 337
SfcI CTRYAG 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 391
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 1 cut(s) 282
SspI AATATT 1 cut(s) 396
SspMI CTAG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 15, 220
TaqI TCGA 3 cut(s) 10, 204, 391
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 3 cut(s) 165, 204, 283
TseI GCWGC 2 cut(s) 185, 250
TspDTI ATGAA 2 cut(s) 318, 372
TspRI CASTG 3 cut(s) 165, 204, 283
Vha464I CTTAAG 1 cut(s) 425
VneI GTGCAC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.