pycom05g16760

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010377
Physical Location & Seq
Forward (+)
20044900 .. 20046796
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16760.6

Sequence Viewer

Length: 432 bp
ATGGGTCCTCGAGTAGTGTGCCAAGTCTGCAACGAAGCACAATCCAAATACAAGTGCCCCTCCTGCCGCGCACCTTATTGTTCTGTGCCCTGCTTCAAGAAGCACAAGGAAAACCCATGTGCTCTTCCAGTTTCTTCCGAGGAAAAACCACCAACTGCAGCTCCAGAGCTACTGGTAGAGAGGCCATTACTTGTGGAGGAACCGAGCCAAGTGCTGCAAGGACCGCAACTCGAGGCGATAGCTTCTTCCAGTGAAATTCACAGTGCTTTGAAAGATGAGAACCTTCGGAAACTCATTTTGAGTATAGATTGTTCTCCAGATGCAGAGAAGGAACTTGAGAAAGCTATGGGCGTGGACGTGTTTCGCGTATTTACTGACAAGATCCTATCTACCATCGAGACATCTTCGTCTTCAGCAAATGCAGACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-HIT

Protein Analysis

144

Amino Acids

15.58

Weight (kDa)

5.1

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820 AT4G28820
fragaria_vesca FvH4_2g19780
malus_domestica MD05G1182200.v1.1 MD10G1170500.v1.1
prunus_persica Prupe.8G209000_v2.0.a1
pyrus_communis pycom05g16760
rosa_chinensis RchiOBHm_Chr6g0285481
rosa_laevigata RLG00000012636
rosa_multiflora Rmu_sc0000284.1_g000002
rosa_roxburghii Rroxscaffold_7G00183110
rosa_rugosa Rorug06G0174800
rosa_samantha Rh6AG286400 Rh6BG287600 Rh6CG288700 Rh6DG281500
rosa_wichuraiana Rw6G024600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 406
AccII CGCG 2 cut(s) 69, 366
AciI CCGC 2 cut(s) 67, 224
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 396
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 2 cut(s) 97, 271
AjiI CACGTC 1 cut(s) 358
AluBI AGCT 4 cut(s) 161, 169, 242, 344
AluI AGCT 4 cut(s) 161, 169, 242, 344
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 2 cut(s) 9, 230
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 158, 214
ApoI RAATTY 1 cut(s) 255
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 5, 221
AvaI CYCGRG 2 cut(s) 9, 230
AvaII GGWCC 2 cut(s) 5, 221
BaeGI GKGCMC 2 cut(s) 59, 90
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 170, 201
BccI CCATC 1 cut(s) 401
BcgI CGANNNNNNTGC 3 cut(s) 34, 193, 227
BcoDI GTCTC 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 3 cut(s) 67, 159, 215
BlsI GCNGC 3 cut(s) 68, 160, 216
Bme18I GGWCC 2 cut(s) 5, 221
BmeT110I CYCGRG 2 cut(s) 9, 230
BmgBI CACGTC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 5, 221
BmiI GGNNCC 2 cut(s) 6, 201
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 2 cut(s) 147, 300
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse1I ACTGG 3 cut(s) 128, 177, 249
BseDI CCNNGG 1 cut(s) 138
BseNI ACTGG 3 cut(s) 128, 177, 249
BseSI GKGCMC 2 cut(s) 59, 90
BseXI GCAGC 2 cut(s) 170, 201
Bsh1236I CGCG 2 cut(s) 69, 366
BshFI GGCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 124
BsiHKCI CYCGRG 2 cut(s) 9, 230
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 1 cut(s) 184
BsoBI CYCGRG 2 cut(s) 9, 230
Bsp1286I GDGCHC 3 cut(s) 59, 90, 124
Bsp143I GATC 1 cut(s) 381
BspACI CCGC 2 cut(s) 67, 224
BspANI GGCC 1 cut(s) 184
BspFNI CGCG 2 cut(s) 69, 366
BspLI GGNNCC 2 cut(s) 6, 201
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 1 cut(s) 376
BspQI GCTCTTC 1 cut(s) 129
BsrI ACTGG 3 cut(s) 128, 177, 249
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 129
BstFNI CGCG 2 cut(s) 69, 366
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 3 cut(s) 27, 63, 223
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 2 cut(s) 59, 90
BstUI CGCG 2 cut(s) 69, 366
BstV1I GCAGC 2 cut(s) 170, 201
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 1 cut(s) 184
BtrI CACGTC 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 256, 268
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 5, 221
CviAII CATG 2 cut(s) 117, 429
CviJI RGCY 6 cut(s) 161, 169, 184, 207, 242, 344
CviKI_1 RGCY 6 cut(s) 161, 169, 184, 207, 242, 344
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 406
DseDI GACNNNNNNGTC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 5, 221
Eco57I CTGAAG 1 cut(s) 396
Eco88I CYCGRG 2 cut(s) 9, 230
EcoO109I RGGNCCY 1 cut(s) 5
FaeI CATG 2 cut(s) 120, 432
FaiI YATR 4 cut(s) 118, 305, 347, 430
FatI CATG 2 cut(s) 116, 428
Fnu4HI GCNGC 3 cut(s) 67, 159, 215
Fsp4HI GCNGC 3 cut(s) 67, 159, 215
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 67, 159, 215
GsuI CTGGAG 2 cut(s) 147, 300
HaeIII GGCC 1 cut(s) 184
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 120, 432
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 139, 288
Hpy188III TCNNGA 4 cut(s) 97, 164, 317, 397
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 2 cut(s) 293, 322
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 5 cut(s) 30, 158, 217, 323, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 63, 223
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 2 cut(s) 120, 432
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 381
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 76, 103, 141, 158, 177, 262, 330
Lsp1109I GCAGC 2 cut(s) 170, 201
LweI GCATC 1 cut(s) 310
MaeII ACGT 1 cut(s) 357
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 5 cut(s) 116, 126, 237, 396, 402
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 3 cut(s) 59, 90, 124
MluCI AATT 1 cut(s) 255
MnlI CCTC 6 cut(s) 18, 70, 133, 174, 190, 226
MvnI CGCG 2 cut(s) 69, 366
MwoI GCNNNNNNNGC 3 cut(s) 27, 63, 223
NdeII GATC 1 cut(s) 381
NlaIII CATG 2 cut(s) 120, 432
NlaIV GGNNCC 2 cut(s) 6, 201
PaeR7I CTCGAG 2 cut(s) 9, 230
PciSI GCTCTTC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PkrI GCNGC 3 cut(s) 68, 160, 216
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 6, 201
PspPI GGNCC 2 cut(s) 5, 221
PspPPI RGGWCCY 1 cut(s) 5
PspXI VCTCGAGB 2 cut(s) 9, 230
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 129
SatI GCNGC 3 cut(s) 67, 159, 215
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 2 cut(s) 5, 221
SduI GDGCHC 3 cut(s) 59, 90, 124
SetI ASST 7 cut(s) 76, 163, 171, 244, 285, 346, 360
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 2 cut(s) 9, 230
SinI GGWCC 2 cut(s) 5, 221
SlaI CTCGAG 2 cut(s) 9, 230
SmlI CTYRAG 3 cut(s) 9, 230, 335
SmoI CTYRAG 3 cut(s) 9, 230, 335
Sse9I AATT 1 cut(s) 255
SsiI CCGC 2 cut(s) 67, 224
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 10, 231, 396
TasI AATT 1 cut(s) 255
TauI GCSGC 1 cut(s) 69
TscAI CASTG 2 cut(s) 256, 268
TseI GCWGC 2 cut(s) 158, 214
TspRI CASTG 2 cut(s) 256, 268
VpaK11BI GGWCC 2 cut(s) 5, 221
XapI RAATTY 1 cut(s) 255
XhoI CTCGAG 2 cut(s) 9, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.