Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011523

Physical Location & Seq

Genomic Coordinates Forward (+)

18001102 .. 18002037

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGATTGCCAAACTGCCTAAACTCTTTAACATGATTCATTTCCTTTTTCAGTCAATGAACCGTTCTTTTATCACCAAACAAGAGCTTGTACACAAGATAATTTGGAACCGCTGTGACCAGATTGACAGAGAGGATGTTGAAGAGCAACTCAACTTGCTGCAAGAACTGGTTCCAGATTGGAAAATTCTAGTATACCATATATGGTATAGCATGCCTCACACAATGTGTGGCTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

80

Amino Acids

9.74

Weight (kDa)

6.39

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1_C	PF16679	1 - 61	6.6e-14	DNA replication factor Cdt1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21760 FvH4_5g18520 FvH4_5g18520
malus_domestica	MD10G1150800.v1.1 MD14G1246400.v1.1
prunus_persica	Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.5G244700_v2.0.a1 Prupe.8G198500_v2.0.a1
pyrus_communis	pycom05g17860
rosa_chinensis	RchiOBHm_Chr7g0176981
rosa_laevigata	RLG00000005566
rosa_multiflora	Rmu_sc0005310.1_g000033
rosa_roxburghii	Rroxscaffold_3G00276190
rosa_rugosa	Rorug06G0402800
rosa_samantha	Rh7AG002100 Rh7BG002500 Rh7CG001800 Rh7DG002400
rosa_wichuraiana	Rw7G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	107, 171
Bse1I	ACTGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	144
Bsp1407I	TGTACA	1 cut(s)	88
BspACI	CCGC	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	107, 171
BspQI	GCTCTTC	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	171
BssNAI	GTATAC	1 cut(s)	193
Bst1107I	GTATAC	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	144
BstZ17I	GTATAC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	31, 211
CviJI	RGCY	2 cut(s)	85, 231
CviKI_1	RGCY	2 cut(s)	85, 231
CviQI	GTAC	1 cut(s)	89
DraIII	CACNNNGTG	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
FaeI	CATG	2 cut(s)	34, 214
FaiI	YATR	7 cut(s)	32, 193, 198, 200, 202, 207, 212
FatI	CATG	2 cut(s)	30, 210
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	34, 214
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	91, 193
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	91, 193
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	34, 214
LguI	GCTCTTC	1 cut(s)	135
LpnPI	CCDG	3 cut(s)	131, 152, 186
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	113
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	2 cut(s)	99, 183
MnlI	CCTC	2 cut(s)	124, 225
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	111
NlaIII	CATG	2 cut(s)	34, 214
NlaIV	GGNNCC	2 cut(s)	107, 171
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	107, 171
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	158
SetI	ASST	1 cut(s)	87
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	2 cut(s)	99, 183
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	62
TasI	AATT	2 cut(s)	99, 183
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	26, 71
XapI	RAATTY	1 cut(s)	183
XceI	RCATGY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.